data_8T4O # _model_server_result.job_id VVavB_4IDwkHGQJ710d1LQ _model_server_result.datetime_utc '2024-11-27 08:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8T4O # _exptl.entry_id 8T4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T4O _cell.length_a 158.538 _cell.length_b 158.538 _cell.length_c 208.009 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.269 137.297935 -34.668167 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 F N4 O3' _chem_comp.formula_weight 344.34 _chem_comp.id Y5C _chem_comp.mon_nstd_flag . _chem_comp.name '4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C17 Y5C doub 411 n n O19 C17 Y5C sing 412 n n C17 C12 Y5C sing 413 n n F25 C13 Y5C sing 414 n n O10 C4 Y5C doub 415 n n C12 C13 Y5C doub 416 n y C12 C14 Y5C sing 417 n y N3 C4 Y5C sing 418 n n N3 C2 Y5C sing 419 n n C13 C15 Y5C sing 420 n y N11 C2 Y5C sing 421 n n C14 C16 Y5C doub 422 n y C4 C8 Y5C sing 423 n n C2 N1 Y5C doub 424 n n C15 C24 Y5C doub 425 n y C16 C24 Y5C sing 426 n y C24 C23 Y5C sing 427 n n C8 C9 Y5C doub 428 n y C8 N7 Y5C sing 429 n y N1 C9 Y5C sing 430 n n C23 C22 Y5C sing 431 n n C20 N7 Y5C sing 432 n n C20 C21 Y5C sing 433 n n C22 C21 Y5C sing 434 n n C9 C5 Y5C sing 435 n y N7 C6 Y5C sing 436 n y C5 C6 Y5C doub 437 n y C14 H1 Y5C sing 438 n n C15 H2 Y5C sing 439 n n C16 H3 Y5C sing 440 n n C20 H4 Y5C sing 441 n n C20 H5 Y5C sing 442 n n C21 H6 Y5C sing 443 n n C21 H7 Y5C sing 444 n n C22 H8 Y5C sing 445 n n C22 H9 Y5C sing 446 n n C23 H10 Y5C sing 447 n n C23 H11 Y5C sing 448 n n C5 H12 Y5C sing 449 n n C6 H13 Y5C sing 450 n n N11 H14 Y5C sing 451 n n N11 H15 Y5C sing 452 n n N3 H16 Y5C sing 453 n n O19 H17 Y5C sing 454 n n # _atom_sites.entry_id 8T4O _atom_sites.fract_transf_matrix[1][1] 0.006308 _atom_sites.fract_transf_matrix[1][2] 0.003642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y5C A 1 601 601 Y5C P34 . D 3 PLG A 1 602 602 PLG PLG . E 3 PLG B 1 601 601 PLG PLG . F 4 HOH A 1 701 20 HOH HOH . F 4 HOH A 2 702 21 HOH HOH . F 4 HOH A 3 703 16 HOH HOH . F 4 HOH A 4 704 17 HOH HOH . F 4 HOH A 5 705 15 HOH HOH . F 4 HOH A 6 706 25 HOH HOH . F 4 HOH A 7 707 11 HOH HOH . F 4 HOH A 8 708 5 HOH HOH . F 4 HOH A 9 709 13 HOH HOH . F 4 HOH A 10 710 7 HOH HOH . F 4 HOH A 11 711 18 HOH HOH . F 4 HOH A 12 712 2 HOH HOH . F 4 HOH A 13 713 23 HOH HOH . F 4 HOH A 14 714 22 HOH HOH . F 4 HOH A 15 715 10 HOH HOH . F 4 HOH A 16 716 8 HOH HOH . F 4 HOH A 17 717 4 HOH HOH . F 4 HOH A 18 718 14 HOH HOH . F 4 HOH A 19 719 19 HOH HOH . G 4 HOH B 1 701 6 HOH HOH . G 4 HOH B 2 702 9 HOH HOH . G 4 HOH B 3 703 12 HOH HOH . G 4 HOH B 4 704 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 Y5C . . . C 2 -39.118 72.433 2.692 1 67.68 ? C12 Y5C 601 A 1 HETATM 2 C C13 Y5C . . . C 2 -37.874 73.001 2.918 1 69.77 ? C13 Y5C 601 A 1 HETATM 3 C C14 Y5C . . . C 2 -39.406 71.174 3.196 1 58.73 ? C14 Y5C 601 A 1 HETATM 4 C C15 Y5C . . . C 2 -36.919 72.309 3.648 1 66.78 ? C15 Y5C 601 A 1 HETATM 5 C C16 Y5C . . . C 2 -38.449 70.482 3.927 1 59.58 ? C16 Y5C 601 A 1 HETATM 6 C C17 Y5C . . . C 2 -40.171 73.201 1.882 1 78.69 ? C17 Y5C 601 A 1 HETATM 7 C C2 Y5C . . . C 2 -39.136 63.939 3.634 1 52.27 ? C2 Y5C 601 A 1 HETATM 8 C C20 Y5C . . . C 2 -35.264 66.841 5.32 1 59.71 ? C20 Y5C 601 A 1 HETATM 9 C C21 Y5C . . . C 2 -35.511 68.127 6.112 1 66.88 ? C21 Y5C 601 A 1 HETATM 10 C C22 Y5C . . . C 2 -36.646 68.967 5.52 1 66.14 ? C22 Y5C 601 A 1 HETATM 11 C C23 Y5C . . . C 2 -36.142 70.298 4.957 1 62.09 ? C23 Y5C 601 A 1 HETATM 12 C C24 Y5C . . . C 2 -37.205 71.05 4.152 1 60.34 ? C24 Y5C 601 A 1 HETATM 13 C C4 Y5C . . . C 2 -37.102 65.027 3.46 1 55.12 ? C4 Y5C 601 A 1 HETATM 14 C C5 Y5C . . . C 2 -37.887 65.03 6.96 1 50.47 ? C5 Y5C 601 A 1 HETATM 15 C C6 Y5C . . . C 2 -36.666 65.696 6.958 1 52.8 ? C6 Y5C 601 A 1 HETATM 16 C C8 Y5C . . . C 2 -37.088 65.208 4.874 1 55 ? C8 Y5C 601 A 1 HETATM 17 C C9 Y5C . . . C 2 -38.15 64.718 5.595 1 51.29 ? C9 Y5C 601 A 1 HETATM 18 F F25 Y5C . . . C 2 -37.59 74.242 2.424 1 75.02 ? F25 Y5C 601 A 1 HETATM 19 N N1 Y5C . . . C 2 -39.162 64.087 4.95 1 54.65 ? N1 Y5C 601 A 1 HETATM 20 N N11 Y5C . . . C 2 -40.232 63.261 2.968 1 26.98 ? N11 Y5C 601 A 1 HETATM 21 N N3 Y5C . . . C 2 -38.127 64.398 2.903 1 60.83 ? N3 Y5C 601 A 1 HETATM 22 N N7 Y5C . . . C 2 -36.202 65.801 5.723 1 55.53 ? N7 Y5C 601 A 1 HETATM 23 O O10 Y5C . . . C 2 -36.057 65.499 2.656 1 55.46 ? O10 Y5C 601 A 1 HETATM 24 O O18 Y5C . . . C 2 -39.884 74.227 1.361 1 74.34 ? O18 Y5C 601 A 1 HETATM 25 O O19 Y5C . . . C 2 -41.522 72.672 1.752 1 84.53 ? O19 Y5C 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 25 #