data_8T4O # _model_server_result.job_id odHk5zdnba_-UAvlDJ1_lg _model_server_result.datetime_utc '2024-10-10 09:27:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8T4O # _exptl.entry_id 8T4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.209 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T4O _cell.length_a 158.538 _cell.length_b 158.538 _cell.length_c 208.009 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.269 137.297935 -34.668167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C10 H15 N2 O7 P' _chem_comp.formula_weight 306.209 _chem_comp.id PLG _chem_comp.mon_nstd_flag . _chem_comp.name N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLG doub 260 n y N1 C6 PLG sing 261 n y C2 C2A PLG sing 262 n n C2 C3 PLG sing 263 n y C2A H2A1 PLG sing 264 n n C2A H2A2 PLG sing 265 n n C2A H2A3 PLG sing 266 n n C3 O3 PLG sing 267 n n C3 C4 PLG doub 268 n y O3 HO3 PLG sing 269 n n C4 C4A PLG sing 270 n n C4 C5 PLG sing 271 n y C4A N PLG sing 272 n n C4A H4A1 PLG sing 273 n n C4A H4A2 PLG sing 274 n n C5 C6 PLG doub 275 n y C5 C5A PLG sing 276 n n C6 H6 PLG sing 277 n n C5A OP4 PLG sing 278 n n C5A H5A1 PLG sing 279 n n C5A H5A2 PLG sing 280 n n OP4 P PLG sing 281 n n P OP1 PLG doub 282 n n P OP2 PLG sing 283 n n P OP3 PLG sing 284 n n OP2 HOP2 PLG sing 285 n n OP3 HOP3 PLG sing 286 n n C O PLG doub 287 n n C OXT PLG sing 288 n n C CA PLG sing 289 n n OXT HXT PLG sing 290 n n CA N PLG sing 291 n n CA HA2 PLG sing 292 n n CA HA1 PLG sing 293 n n N H PLG sing 294 n n # _atom_sites.entry_id 8T4O _atom_sites.fract_transf_matrix[1][1] 0.006308 _atom_sites.fract_transf_matrix[1][2] 0.003642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y5C A 1 601 601 Y5C P34 . D 3 PLG A 1 602 602 PLG PLG . E 3 PLG B 1 601 601 PLG PLG . F 4 HOH A 1 701 20 HOH HOH . F 4 HOH A 2 702 21 HOH HOH . F 4 HOH A 3 703 16 HOH HOH . F 4 HOH A 4 704 17 HOH HOH . F 4 HOH A 5 705 15 HOH HOH . F 4 HOH A 6 706 25 HOH HOH . F 4 HOH A 7 707 11 HOH HOH . F 4 HOH A 8 708 5 HOH HOH . F 4 HOH A 9 709 13 HOH HOH . F 4 HOH A 10 710 7 HOH HOH . F 4 HOH A 11 711 18 HOH HOH . F 4 HOH A 12 712 2 HOH HOH . F 4 HOH A 13 713 23 HOH HOH . F 4 HOH A 14 714 22 HOH HOH . F 4 HOH A 15 715 10 HOH HOH . F 4 HOH A 16 716 8 HOH HOH . F 4 HOH A 17 717 4 HOH HOH . F 4 HOH A 18 718 14 HOH HOH . F 4 HOH A 19 719 19 HOH HOH . G 4 HOH B 1 701 6 HOH HOH . G 4 HOH B 2 702 9 HOH HOH . G 4 HOH B 3 703 12 HOH HOH . G 4 HOH B 4 704 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLG . B . D 3 -30.961 60.306 1.285 0.97 39.43 ? N1 PLG 602 A 1 HETATM 2 C C2 PLG . B . D 3 -32.077 60.009 1.99 0.97 31.41 ? C2 PLG 602 A 1 HETATM 3 C C2A PLG . B . D 3 -33.12 59.072 1.441 0.97 25.95 ? C2A PLG 602 A 1 HETATM 4 C C3 PLG . B . D 3 -32.294 60.612 3.321 0.97 38.54 ? C3 PLG 602 A 1 HETATM 5 O O3 PLG . B . D 3 -33.417 60.305 4.026 0.97 36.13 ? O3 PLG 602 A 1 HETATM 6 C C4 PLG . B . D 3 -31.25 61.527 3.841 0.97 43.01 ? C4 PLG 602 A 1 HETATM 7 C C4A PLG . B . D 3 -31.339 62.215 5.186 0.97 61.58 ? C4A PLG 602 A 1 HETATM 8 C C5 PLG . B . D 3 -30.078 61.765 2.97 0.97 43.47 ? C5 PLG 602 A 1 HETATM 9 C C6 PLG . B . D 3 -30.003 61.135 1.731 0.97 43.52 ? C6 PLG 602 A 1 HETATM 10 C C5A PLG . B . D 3 -28.984 62.696 3.433 0.97 39.55 ? C5A PLG 602 A 1 HETATM 11 O OP4 PLG . B . D 3 -28.17 62.081 4.425 0.97 22.96 ? OP4 PLG 602 A 1 HETATM 12 P P PLG . B . D 3 -27.475 63.015 5.532 0.97 32.07 ? P PLG 602 A 1 HETATM 13 O OP1 PLG . B . D 3 -26.744 62.044 6.426 0.97 27.43 ? OP1 PLG 602 A 1 HETATM 14 O OP2 PLG . B . D 3 -26.587 63.908 4.701 0.97 24.08 ? OP2 PLG 602 A 1 HETATM 15 O OP3 PLG . B . D 3 -28.63 63.737 6.181 0.97 28.84 ? OP3 PLG 602 A 1 HETATM 16 C C PLG . B . D 3 -34.706 62.308 6.922 0.97 71.58 ? C PLG 602 A 1 HETATM 17 O O PLG . B . D 3 -35.75 61.825 6.431 0.97 69.75 ? O PLG 602 A 1 HETATM 18 O OXT PLG . B . D 3 -34.496 62.371 8.153 0.97 72.3 ? OXT PLG 602 A 1 HETATM 19 C CA PLG . B . D 3 -33.642 62.828 5.987 0.97 64.95 ? CA PLG 602 A 1 HETATM 20 N N PLG . B . D 3 -32.562 61.869 5.879 0.97 64.75 ? N PLG 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #