data_8T4P # _model_server_result.job_id tOTG9j7OmAZ-Fu6297juSw _model_server_result.datetime_utc '2024-11-27 08:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8T4P # _exptl.entry_id 8T4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T4P _cell.length_a 159.288 _cell.length_b 159.288 _cell.length_c 208.649 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.644 137.947455 -34.774833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N2 O7 P' _chem_comp.formula_weight 306.209 _chem_comp.id PLG _chem_comp.mon_nstd_flag . _chem_comp.name N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLG doub 260 n y N1 C6 PLG sing 261 n y C2 C2A PLG sing 262 n n C2 C3 PLG sing 263 n y C2A H2A1 PLG sing 264 n n C2A H2A2 PLG sing 265 n n C2A H2A3 PLG sing 266 n n C3 O3 PLG sing 267 n n C3 C4 PLG doub 268 n y O3 HO3 PLG sing 269 n n C4 C4A PLG sing 270 n n C4 C5 PLG sing 271 n y C4A N PLG sing 272 n n C4A H4A1 PLG sing 273 n n C4A H4A2 PLG sing 274 n n C5 C6 PLG doub 275 n y C5 C5A PLG sing 276 n n C6 H6 PLG sing 277 n n C5A OP4 PLG sing 278 n n C5A H5A1 PLG sing 279 n n C5A H5A2 PLG sing 280 n n OP4 P PLG sing 281 n n P OP1 PLG doub 282 n n P OP2 PLG sing 283 n n P OP3 PLG sing 284 n n OP2 HOP2 PLG sing 285 n n OP3 HOP3 PLG sing 286 n n C O PLG doub 287 n n C OXT PLG sing 288 n n C CA PLG sing 289 n n OXT HXT PLG sing 290 n n CA N PLG sing 291 n n CA HA2 PLG sing 292 n n CA HA1 PLG sing 293 n n N H PLG sing 294 n n # _atom_sites.entry_id 8T4P _atom_sites.fract_transf_matrix[1][1] 0.006278 _atom_sites.fract_transf_matrix[1][2] 0.003625 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 601 601 PLG PLG . D 3 Y5Z A 1 602 602 Y5Z 2E7 . E 2 PLG B 1 601 601 PLG PLG . F 4 HOH A 1 701 13 HOH HOH . F 4 HOH A 2 702 4 HOH HOH . F 4 HOH A 3 703 20 HOH HOH . F 4 HOH A 4 704 5 HOH HOH . F 4 HOH A 5 705 11 HOH HOH . F 4 HOH A 6 706 2 HOH HOH . F 4 HOH A 7 707 18 HOH HOH . F 4 HOH A 8 708 7 HOH HOH . F 4 HOH A 9 709 3 HOH HOH . F 4 HOH A 10 710 19 HOH HOH . F 4 HOH A 11 711 16 HOH HOH . F 4 HOH A 12 712 10 HOH HOH . F 4 HOH A 13 713 9 HOH HOH . F 4 HOH A 14 714 22 HOH HOH . F 4 HOH A 15 715 12 HOH HOH . F 4 HOH A 16 716 1 HOH HOH . F 4 HOH A 17 717 17 HOH HOH . G 4 HOH B 1 701 6 HOH HOH . G 4 HOH B 2 702 21 HOH HOH . G 4 HOH B 3 703 14 HOH HOH . G 4 HOH B 4 704 15 HOH HOH . G 4 HOH B 5 705 8 HOH HOH . G 4 HOH B 6 706 23 HOH HOH . G 4 HOH B 7 707 24 HOH HOH . G 4 HOH B 8 708 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLG . . . C 2 -31.152 61.037 1.71 1 23.86 ? N1 PLG 601 A 1 HETATM 2 C C2 PLG . . . C 2 -32.376 60.557 2.044 1 25.48 ? C2 PLG 601 A 1 HETATM 3 C C2A PLG . . . C 2 -33.183 59.75 1.061 1 23.14 ? C2A PLG 601 A 1 HETATM 4 C C3 PLG . . . C 2 -32.942 60.822 3.39 1 34.21 ? C3 PLG 601 A 1 HETATM 5 O O3 PLG . . . C 2 -34.168 60.352 3.744 1 42.52 ? O3 PLG 601 A 1 HETATM 6 C C4 PLG . . . C 2 -32.127 61.618 4.327 1 31.18 ? C4 PLG 601 A 1 HETATM 7 C C4A PLG . . . C 2 -32.598 61.947 5.722 1 48.96 ? C4A PLG 601 A 1 HETATM 8 C C5 PLG . . . C 2 -30.811 62.083 3.847 1 49.08 ? C5 PLG 601 A 1 HETATM 9 C C6 PLG . . . C 2 -30.393 61.764 2.554 1 52.07 ? C6 PLG 601 A 1 HETATM 10 C C5A PLG . . . C 2 -29.97 62.896 4.799 1 57.33 ? C5A PLG 601 A 1 HETATM 11 O OP4 PLG . . . C 2 -28.646 63.092 4.321 1 42.97 ? OP4 PLG 601 A 1 HETATM 12 P P PLG . . . C 2 -27.561 63.607 5.39 1 30.11 ? P PLG 601 A 1 HETATM 13 O OP1 PLG . . . C 2 -27.073 62.342 6.05 1 37.24 ? OP1 PLG 601 A 1 HETATM 14 O OP2 PLG . . . C 2 -26.526 64.321 4.551 1 63.34 ? OP2 PLG 601 A 1 HETATM 15 O OP3 PLG . . . C 2 -28.371 64.505 6.3 1 28.95 ? OP3 PLG 601 A 1 HETATM 16 C C PLG . . . C 2 -35.127 62.523 7.443 1 48.66 ? C PLG 601 A 1 HETATM 17 O O PLG . . . C 2 -35.506 61.595 6.693 1 32.37 ? O PLG 601 A 1 HETATM 18 O OXT PLG . . . C 2 -35.565 62.667 8.604 1 48.29 ? OXT PLG 601 A 1 HETATM 19 C CA PLG . . . C 2 -34.109 63.523 6.938 1 57.71 ? CA PLG 601 A 1 HETATM 20 N N PLG . . . C 2 -33.473 63.101 5.705 1 55.2 ? N PLG 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #