data_8T4P
#
_model_server_result.job_id            Am9AYpi-p2W4_uPa0EsR3w 
_model_server_result.datetime_utc      '2024-10-10 09:24:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8T4P 
#
_exptl.entry_id    8T4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              602.568 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-gamma-glutamyl-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8T4P 
_cell.length_a            159.288 
_cell.length_b            159.288 
_cell.length_c            208.649 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.644 137.947455 -34.774833 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H31 F N6 O9' 
_chem_comp.formula_weight    602.568 
_chem_comp.id                Y5Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-gamma-glutamyl-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C37 C38 Y5Z sing 411 n n 
C37 C36 Y5Z sing 412 n n 
C38 O39 Y5Z doub 413 n n 
C38 O40 Y5Z sing 414 n n 
C36 C35 Y5Z sing 415 n n 
C35 N25 Y5Z sing 416 n n 
C35 C41 Y5Z sing 417 n n 
N25 C23 Y5Z sing 418 n n 
C41 O42 Y5Z doub 419 n n 
C41 O43 Y5Z sing 420 n n 
C23 C22 Y5Z sing 421 n n 
C23 O24 Y5Z doub 422 n n 
O27 C26 Y5Z doub 423 n n 
C22 C21 Y5Z sing 424 n n 
C20 C21 Y5Z sing 425 n n 
C20 C26 Y5Z sing 426 n n 
C20 N19 Y5Z sing 427 n n 
O18 C17 Y5Z doub 428 n n 
C26 O28 Y5Z sing 429 n n 
N19 C17 Y5Z sing 430 n n 
C17 C12 Y5Z sing 431 n n 
F34 C13 Y5Z sing 432 n n 
O10 C04 Y5Z doub 433 n n 
C12 C13 Y5Z doub 434 n y 
C12 C14 Y5Z sing 435 n y 
N03 C04 Y5Z sing 436 n n 
N03 C02 Y5Z sing 437 n n 
N11 C02 Y5Z sing 438 n n 
C13 C15 Y5Z sing 439 n y 
C14 C16 Y5Z doub 440 n y 
C04 C08 Y5Z sing 441 n n 
C02 N01 Y5Z doub 442 n n 
C15 C33 Y5Z doub 443 n y 
C16 C33 Y5Z sing 444 n y 
C33 C32 Y5Z sing 445 n n 
C31 C32 Y5Z sing 446 n n 
C31 C30 Y5Z sing 447 n n 
C08 C09 Y5Z doub 448 n y 
C08 N07 Y5Z sing 449 n y 
N01 C09 Y5Z sing 450 n n 
C29 C30 Y5Z sing 451 n n 
C29 N07 Y5Z sing 452 n n 
C09 C05 Y5Z sing 453 n y 
N07 C06 Y5Z sing 454 n y 
C06 C05 Y5Z doub 455 n y 
C05 H1 Y5Z sing 456 n n 
C06 H2 Y5Z sing 457 n n 
C14 H3 Y5Z sing 458 n n 
C15 H4 Y5Z sing 459 n n 
C16 H5 Y5Z sing 460 n n 
C20 H6 Y5Z sing 461 n n 
C21 H7 Y5Z sing 462 n n 
C21 H8 Y5Z sing 463 n n 
C22 H9 Y5Z sing 464 n n 
C22 H10 Y5Z sing 465 n n 
C29 H11 Y5Z sing 466 n n 
C29 H12 Y5Z sing 467 n n 
C30 H13 Y5Z sing 468 n n 
C30 H14 Y5Z sing 469 n n 
C31 H15 Y5Z sing 470 n n 
C31 H16 Y5Z sing 471 n n 
C32 H17 Y5Z sing 472 n n 
C32 H18 Y5Z sing 473 n n 
C35 H19 Y5Z sing 474 n n 
C36 H20 Y5Z sing 475 n n 
C36 H21 Y5Z sing 476 n n 
C37 H22 Y5Z sing 477 n n 
C37 H23 Y5Z sing 478 n n 
N11 H25 Y5Z sing 479 n n 
N11 H26 Y5Z sing 480 n n 
N19 H27 Y5Z sing 481 n n 
N25 H28 Y5Z sing 482 n n 
O28 H29 Y5Z sing 483 n n 
O40 H30 Y5Z sing 484 n n 
O43 H31 Y5Z sing 485 n n 
N03 H24 Y5Z sing 486 n n 
#
_atom_sites.entry_id                     8T4P 
_atom_sites.fract_transf_matrix[1][1]    0.006278 
_atom_sites.fract_transf_matrix[1][2]    0.003625 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007249 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLG A 1 601 601 PLG PLG . 
D 3 Y5Z A 1 602 602 Y5Z 2E7 . 
E 2 PLG B 1 601 601 PLG PLG . 
F 4 HOH A 1 701 13 HOH HOH . 
F 4 HOH A 2 702 4 HOH HOH . 
F 4 HOH A 3 703 20 HOH HOH . 
F 4 HOH A 4 704 5 HOH HOH . 
F 4 HOH A 5 705 11 HOH HOH . 
F 4 HOH A 6 706 2 HOH HOH . 
F 4 HOH A 7 707 18 HOH HOH . 
F 4 HOH A 8 708 7 HOH HOH . 
F 4 HOH A 9 709 3 HOH HOH . 
F 4 HOH A 10 710 19 HOH HOH . 
F 4 HOH A 11 711 16 HOH HOH . 
F 4 HOH A 12 712 10 HOH HOH . 
F 4 HOH A 13 713 9 HOH HOH . 
F 4 HOH A 14 714 22 HOH HOH . 
F 4 HOH A 15 715 12 HOH HOH . 
F 4 HOH A 16 716 1 HOH HOH . 
F 4 HOH A 17 717 17 HOH HOH . 
G 4 HOH B 1 701 6 HOH HOH . 
G 4 HOH B 2 702 21 HOH HOH . 
G 4 HOH B 3 703 14 HOH HOH . 
G 4 HOH B 4 704 15 HOH HOH . 
G 4 HOH B 5 705 8 HOH HOH . 
G 4 HOH B 6 706 23 HOH HOH . 
G 4 HOH B 7 707 24 HOH HOH . 
G 4 HOH B 8 708 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 Y5Z . . . D 3 -36.371 65.943 2.71 1 62.22 ? O10 Y5Z 602 A 1 
HETATM 2 C C02 Y5Z . . . D 3 -39.473 64.378 3.512 1 33.89 ? C02 Y5Z 602 A 1 
HETATM 3 C C04 Y5Z . . . D 3 -37.289 65.575 3.362 1 55.68 ? C04 Y5Z 602 A 1 
HETATM 4 C C05 Y5Z . . . D 3 -38.238 65.864 6.918 1 64.09 ? C05 Y5Z 602 A 1 
HETATM 5 C C06 Y5Z . . . D 3 -37.029 66.547 6.914 1 65.15 ? C06 Y5Z 602 A 1 
HETATM 6 C C08 Y5Z . . . D 3 -37.361 65.882 4.862 1 57.78 ? C08 Y5Z 602 A 1 
HETATM 7 C C09 Y5Z . . . D 3 -38.448 65.439 5.598 1 52.91 ? C09 Y5Z 602 A 1 
HETATM 8 C C12 Y5Z . . . D 3 -39.192 73.196 2.71 1 70.47 ? C12 Y5Z 602 A 1 
HETATM 9 C C13 Y5Z . . . D 3 -37.949 73.695 3.061 1 77.19 ? C13 Y5Z 602 A 1 
HETATM 10 C C14 Y5Z . . . D 3 -39.584 71.943 3.155 1 59.05 ? C14 Y5Z 602 A 1 
HETATM 11 C C15 Y5Z . . . D 3 -37.098 72.943 3.858 1 73.55 ? C15 Y5Z 602 A 1 
HETATM 12 C C16 Y5Z . . . D 3 -38.733 71.19 3.954 1 59.76 ? C16 Y5Z 602 A 1 
HETATM 13 C C17 Y5Z . . . D 3 -40.121 74.04 1.828 1 81.59 ? C17 Y5Z 602 A 1 
HETATM 14 C C20 Y5Z . . . D 3 -42.438 74.572 0.969 1 85.45 ? C20 Y5Z 602 A 1 
HETATM 15 C C21 Y5Z . . . D 3 -43.838 73.956 0.971 1 85.77 ? C21 Y5Z 602 A 1 
HETATM 16 C C22 Y5Z . . . D 3 -43.804 72.431 0.876 1 87.26 ? C22 Y5Z 602 A 1 
HETATM 17 C C23 Y5Z . . . D 3 -45.173 71.845 0.529 1 92.41 ? C23 Y5Z 602 A 1 
HETATM 18 C C26 Y5Z . . . D 3 -42.461 76.016 1.47 1 92.4 ? C26 Y5Z 602 A 1 
HETATM 19 C C29 Y5Z . . . D 3 -35.275 67.168 5.318 1 50.43 ? C29 Y5Z 602 A 1 
HETATM 20 C C30 Y5Z . . . D 3 -35.324 68.674 5.594 1 53.42 ? C30 Y5Z 602 A 1 
HETATM 21 C C31 Y5Z . . . D 3 -36.357 69.417 4.738 1 60.62 ? C31 Y5Z 602 A 1 
HETATM 22 C C32 Y5Z . . . D 3 -36.537 70.868 5.192 1 57.6 ? C32 Y5Z 602 A 1 
HETATM 23 C C33 Y5Z . . . D 3 -37.486 71.689 4.305 1 62.17 ? C33 Y5Z 602 A 1 
HETATM 24 C C35 Y5Z . . . D 3 -47.363 72.084 -0.783 1 90.16 ? C35 Y5Z 602 A 1 
HETATM 25 C C36 Y5Z . . . D 3 -47.217 70.842 -1.665 0 76.41 ? C36 Y5Z 602 A 1 
HETATM 26 C C37 Y5Z . . . D 3 -48.25 70.783 -2.788 0 64.72 ? C37 Y5Z 602 A 1 
HETATM 27 C C38 Y5Z . . . D 3 -49.67 70.555 -2.274 0 55.56 ? C38 Y5Z 602 A 1 
HETATM 28 C C41 Y5Z . . . D 3 -48.246 71.838 0.442 1 95.2 ? C41 Y5Z 602 A 1 
HETATM 29 F F34 Y5Z . . . D 3 -37.565 74.93 2.622 1 83.13 ? F34 Y5Z 602 A 1 
HETATM 30 N N01 Y5Z . . . D 3 -39.538 64.673 4.944 1 39.32 ? N01 Y5Z 602 A 1 
HETATM 31 N N03 Y5Z . . . D 3 -38.342 64.833 2.731 1 51.26 ? N03 Y5Z 602 A 1 
HETATM 32 N N07 Y5Z . . . D 3 -36.535 66.539 5.688 1 59.82 ? N07 Y5Z 602 A 1 
HETATM 33 N N11 Y5Z . . . D 3 -40.544 63.629 2.877 1 31.34 ? N11 Y5Z 602 A 1 
HETATM 34 N N19 Y5Z . . . D 3 -41.552 73.772 1.804 1 81.76 ? N19 Y5Z 602 A 1 
HETATM 35 N N25 Y5Z . . . D 3 -46.042 72.565 -0.392 1 95.84 ? N25 Y5Z 602 A 1 
HETATM 36 O O18 Y5Z . . . D 3 -39.668 74.91 1.162 1 84.95 ? O18 Y5Z 602 A 1 
HETATM 37 O O24 Y5Z . . . D 3 -45.505 70.815 1.012 1 86.46 ? O24 Y5Z 602 A 1 
HETATM 38 O O27 Y5Z . . . D 3 -42.391 76.969 0.649 1 92.96 ? O27 Y5Z 602 A 1 
HETATM 39 O O28 Y5Z . . . D 3 -42.546 76.253 2.704 1 93.18 ? O28 Y5Z 602 A 1 
HETATM 40 O O39 Y5Z . . . D 3 -50.448 71.532 -2.116 0 53.13 ? O39 Y5Z 602 A 1 
HETATM 41 O O40 Y5Z . . . D 3 -50.061 69.388 -2.009 0 52.03 ? O40 Y5Z 602 A 1 
HETATM 42 O O42 Y5Z . . . D 3 -48.903 72.788 0.943 1 98.43 ? O42 Y5Z 602 A 1 
HETATM 43 O O43 Y5Z . . . D 3 -48.325 70.686 0.944 1 95.97 ? O43 Y5Z 602 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#