data_8T55
#
_model_server_result.job_id            7Doyou5KFrvl01a9C-18zA 
_model_server_result.datetime_utc      '2024-11-26 21:02:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":801}' 
#
_entry.id    8T55 
#
_exptl.entry_id    8T55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T55 
_cell.length_a            76.696 
_cell.length_b            121.618 
_cell.length_c            132.027 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,H 1 1 
B,E,F,I 2 1 
C,G,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 114 A CYS 487 1_555 D C34 ZI3 . A ZI3 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale2 B SG CYS 114 B CYS 487 1_555 F C34 ZI3 . B ZI3 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale3 C SG CYS 114 C CYS 487 1_555 G C34 ZI3 . C ZI3 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8T55 
_atom_sites.fract_transf_matrix[1][1]    0.013038 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007574 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZI3 A 1 801 487 ZI3 lin . 
E 3 EDO B 1 801 801 EDO EDO . 
F 2 ZI3 B 1 802 487 ZI3 lin . 
G 2 ZI3 C 1 801 487 ZI3 lin . 
H 4 HOH A 1 901 102 HOH HOH . 
H 4 HOH A 2 902 130 HOH HOH . 
H 4 HOH A 3 903 105 HOH HOH . 
H 4 HOH A 4 904 155 HOH HOH . 
H 4 HOH A 5 905 226 HOH HOH . 
H 4 HOH A 6 906 84 HOH HOH . 
H 4 HOH A 7 907 96 HOH HOH . 
H 4 HOH A 8 908 224 HOH HOH . 
H 4 HOH A 9 909 27 HOH HOH . 
H 4 HOH A 10 910 94 HOH HOH . 
H 4 HOH A 11 911 164 HOH HOH . 
H 4 HOH A 12 912 137 HOH HOH . 
H 4 HOH A 13 913 216 HOH HOH . 
H 4 HOH A 14 914 34 HOH HOH . 
H 4 HOH A 15 915 197 HOH HOH . 
H 4 HOH A 16 916 57 HOH HOH . 
H 4 HOH A 17 917 170 HOH HOH . 
H 4 HOH A 18 918 181 HOH HOH . 
H 4 HOH A 19 919 118 HOH HOH . 
H 4 HOH A 20 920 46 HOH HOH . 
H 4 HOH A 21 921 126 HOH HOH . 
H 4 HOH A 22 922 191 HOH HOH . 
H 4 HOH A 23 923 74 HOH HOH . 
H 4 HOH A 24 924 205 HOH HOH . 
H 4 HOH A 25 925 37 HOH HOH . 
H 4 HOH A 26 926 203 HOH HOH . 
H 4 HOH A 27 927 103 HOH HOH . 
H 4 HOH A 28 928 45 HOH HOH . 
H 4 HOH A 29 929 129 HOH HOH . 
H 4 HOH A 30 930 23 HOH HOH . 
H 4 HOH A 31 931 100 HOH HOH . 
H 4 HOH A 32 932 33 HOH HOH . 
H 4 HOH A 33 933 25 HOH HOH . 
H 4 HOH A 34 934 109 HOH HOH . 
H 4 HOH A 35 935 110 HOH HOH . 
H 4 HOH A 36 936 231 HOH HOH . 
H 4 HOH A 37 937 72 HOH HOH . 
H 4 HOH A 38 938 101 HOH HOH . 
H 4 HOH A 39 939 1 HOH HOH . 
H 4 HOH A 40 940 80 HOH HOH . 
H 4 HOH A 41 941 232 HOH HOH . 
H 4 HOH A 42 942 40 HOH HOH . 
H 4 HOH A 43 943 61 HOH HOH . 
H 4 HOH A 44 944 115 HOH HOH . 
H 4 HOH A 45 945 128 HOH HOH . 
H 4 HOH A 46 946 11 HOH HOH . 
H 4 HOH A 47 947 3 HOH HOH . 
H 4 HOH A 48 948 93 HOH HOH . 
H 4 HOH A 49 949 217 HOH HOH . 
H 4 HOH A 50 950 6 HOH HOH . 
H 4 HOH A 51 951 149 HOH HOH . 
H 4 HOH A 52 952 10 HOH HOH . 
H 4 HOH A 53 953 123 HOH HOH . 
H 4 HOH A 54 954 17 HOH HOH . 
H 4 HOH A 55 955 66 HOH HOH . 
H 4 HOH A 56 956 225 HOH HOH . 
H 4 HOH A 57 957 132 HOH HOH . 
H 4 HOH A 58 958 159 HOH HOH . 
H 4 HOH A 59 959 142 HOH HOH . 
H 4 HOH A 60 960 119 HOH HOH . 
H 4 HOH A 61 961 20 HOH HOH . 
H 4 HOH A 62 962 4 HOH HOH . 
H 4 HOH A 63 963 31 HOH HOH . 
H 4 HOH A 64 964 135 HOH HOH . 
H 4 HOH A 65 965 160 HOH HOH . 
H 4 HOH A 66 966 67 HOH HOH . 
H 4 HOH A 67 967 30 HOH HOH . 
H 4 HOH A 68 968 49 HOH HOH . 
H 4 HOH A 69 969 167 HOH HOH . 
H 4 HOH A 70 970 79 HOH HOH . 
H 4 HOH A 71 971 147 HOH HOH . 
H 4 HOH A 72 972 227 HOH HOH . 
H 4 HOH A 73 973 199 HOH HOH . 
H 4 HOH A 74 974 82 HOH HOH . 
H 4 HOH A 75 975 47 HOH HOH . 
H 4 HOH A 76 976 26 HOH HOH . 
H 4 HOH A 77 977 75 HOH HOH . 
H 4 HOH A 78 978 202 HOH HOH . 
H 4 HOH A 79 979 122 HOH HOH . 
H 4 HOH A 80 980 15 HOH HOH . 
H 4 HOH A 81 981 162 HOH HOH . 
H 4 HOH A 82 982 201 HOH HOH . 
H 4 HOH A 83 983 138 HOH HOH . 
H 4 HOH A 84 984 150 HOH HOH . 
H 4 HOH A 85 985 215 HOH HOH . 
H 4 HOH A 86 986 97 HOH HOH . 
H 4 HOH A 87 987 86 HOH HOH . 
H 4 HOH A 88 988 50 HOH HOH . 
H 4 HOH A 89 989 218 HOH HOH . 
H 4 HOH A 90 990 185 HOH HOH . 
H 4 HOH A 91 991 48 HOH HOH . 
H 4 HOH A 92 992 172 HOH HOH . 
H 4 HOH A 93 993 152 HOH HOH . 
H 4 HOH A 94 994 133 HOH HOH . 
H 4 HOH A 95 995 89 HOH HOH . 
H 4 HOH A 96 996 214 HOH HOH . 
H 4 HOH A 97 997 64 HOH HOH . 
H 4 HOH A 98 998 87 HOH HOH . 
H 4 HOH A 99 999 62 HOH HOH . 
H 4 HOH A 100 1000 12 HOH HOH . 
H 4 HOH A 101 1001 39 HOH HOH . 
H 4 HOH A 102 1002 24 HOH HOH . 
H 4 HOH A 103 1003 198 HOH HOH . 
H 4 HOH A 104 1004 145 HOH HOH . 
H 4 HOH A 105 1005 195 HOH HOH . 
H 4 HOH A 106 1006 161 HOH HOH . 
H 4 HOH A 107 1007 186 HOH HOH . 
H 4 HOH A 108 1008 112 HOH HOH . 
H 4 HOH A 109 1009 204 HOH HOH . 
H 4 HOH A 110 1010 153 HOH HOH . 
H 4 HOH A 111 1011 77 HOH HOH . 
I 4 HOH B 1 901 140 HOH HOH . 
I 4 HOH B 2 902 134 HOH HOH . 
I 4 HOH B 3 903 65 HOH HOH . 
I 4 HOH B 4 904 16 HOH HOH . 
I 4 HOH B 5 905 36 HOH HOH . 
I 4 HOH B 6 906 125 HOH HOH . 
I 4 HOH B 7 907 144 HOH HOH . 
I 4 HOH B 8 908 154 HOH HOH . 
I 4 HOH B 9 909 71 HOH HOH . 
I 4 HOH B 10 910 207 HOH HOH . 
I 4 HOH B 11 911 208 HOH HOH . 
I 4 HOH B 12 912 139 HOH HOH . 
I 4 HOH B 13 913 176 HOH HOH . 
I 4 HOH B 14 914 78 HOH HOH . 
I 4 HOH B 15 915 18 HOH HOH . 
I 4 HOH B 16 916 193 HOH HOH . 
I 4 HOH B 17 917 211 HOH HOH . 
I 4 HOH B 18 918 98 HOH HOH . 
I 4 HOH B 19 919 41 HOH HOH . 
I 4 HOH B 20 920 108 HOH HOH . 
I 4 HOH B 21 921 221 HOH HOH . 
I 4 HOH B 22 922 56 HOH HOH . 
I 4 HOH B 23 923 81 HOH HOH . 
I 4 HOH B 24 924 85 HOH HOH . 
I 4 HOH B 25 925 91 HOH HOH . 
I 4 HOH B 26 926 117 HOH HOH . 
I 4 HOH B 27 927 124 HOH HOH . 
I 4 HOH B 28 928 146 HOH HOH . 
I 4 HOH B 29 929 53 HOH HOH . 
I 4 HOH B 30 930 114 HOH HOH . 
I 4 HOH B 31 931 104 HOH HOH . 
I 4 HOH B 32 932 2 HOH HOH . 
I 4 HOH B 33 933 116 HOH HOH . 
I 4 HOH B 34 934 35 HOH HOH . 
I 4 HOH B 35 935 174 HOH HOH . 
I 4 HOH B 36 936 8 HOH HOH . 
I 4 HOH B 37 937 19 HOH HOH . 
I 4 HOH B 38 938 90 HOH HOH . 
I 4 HOH B 39 939 219 HOH HOH . 
I 4 HOH B 40 940 200 HOH HOH . 
I 4 HOH B 41 941 76 HOH HOH . 
I 4 HOH B 42 942 113 HOH HOH . 
I 4 HOH B 43 943 169 HOH HOH . 
I 4 HOH B 44 944 7 HOH HOH . 
I 4 HOH B 45 945 44 HOH HOH . 
I 4 HOH B 46 946 143 HOH HOH . 
I 4 HOH B 47 947 163 HOH HOH . 
I 4 HOH B 48 948 55 HOH HOH . 
I 4 HOH B 49 949 175 HOH HOH . 
I 4 HOH B 50 950 157 HOH HOH . 
I 4 HOH B 51 951 141 HOH HOH . 
I 4 HOH B 52 952 51 HOH HOH . 
I 4 HOH B 53 953 5 HOH HOH . 
I 4 HOH B 54 954 106 HOH HOH . 
I 4 HOH B 55 955 148 HOH HOH . 
I 4 HOH B 56 956 209 HOH HOH . 
I 4 HOH B 57 957 206 HOH HOH . 
I 4 HOH B 58 958 120 HOH HOH . 
I 4 HOH B 59 959 136 HOH HOH . 
I 4 HOH B 60 960 95 HOH HOH . 
I 4 HOH B 61 961 42 HOH HOH . 
I 4 HOH B 62 962 28 HOH HOH . 
I 4 HOH B 63 963 178 HOH HOH . 
I 4 HOH B 64 964 43 HOH HOH . 
I 4 HOH B 65 965 54 HOH HOH . 
I 4 HOH B 66 966 29 HOH HOH . 
I 4 HOH B 67 967 188 HOH HOH . 
I 4 HOH B 68 968 58 HOH HOH . 
I 4 HOH B 69 969 68 HOH HOH . 
I 4 HOH B 70 970 220 HOH HOH . 
I 4 HOH B 71 971 222 HOH HOH . 
I 4 HOH B 72 972 233 HOH HOH . 
I 4 HOH B 73 973 158 HOH HOH . 
I 4 HOH B 74 974 21 HOH HOH . 
I 4 HOH B 75 975 73 HOH HOH . 
I 4 HOH B 76 976 111 HOH HOH . 
I 4 HOH B 77 977 88 HOH HOH . 
I 4 HOH B 78 978 165 HOH HOH . 
I 4 HOH B 79 979 60 HOH HOH . 
I 4 HOH B 80 980 38 HOH HOH . 
I 4 HOH B 81 981 190 HOH HOH . 
I 4 HOH B 82 982 228 HOH HOH . 
I 4 HOH B 83 983 171 HOH HOH . 
I 4 HOH B 84 984 177 HOH HOH . 
I 4 HOH B 85 985 210 HOH HOH . 
I 4 HOH B 86 986 70 HOH HOH . 
I 4 HOH B 87 987 184 HOH HOH . 
I 4 HOH B 88 988 187 HOH HOH . 
I 4 HOH B 89 989 14 HOH HOH . 
I 4 HOH B 90 990 168 HOH HOH . 
I 4 HOH B 91 991 107 HOH HOH . 
I 4 HOH B 92 992 52 HOH HOH . 
I 4 HOH B 93 993 166 HOH HOH . 
I 4 HOH B 94 994 32 HOH HOH . 
I 4 HOH B 95 995 156 HOH HOH . 
I 4 HOH B 96 996 69 HOH HOH . 
I 4 HOH B 97 997 99 HOH HOH . 
I 4 HOH B 98 998 92 HOH HOH . 
I 4 HOH B 99 999 235 HOH HOH . 
I 4 HOH B 100 1000 196 HOH HOH . 
I 4 HOH B 101 1001 213 HOH HOH . 
I 4 HOH B 102 1002 183 HOH HOH . 
I 4 HOH B 103 1003 151 HOH HOH . 
I 4 HOH B 104 1004 234 HOH HOH . 
I 4 HOH B 105 1005 194 HOH HOH . 
I 4 HOH B 106 1006 173 HOH HOH . 
I 4 HOH B 107 1007 182 HOH HOH . 
I 4 HOH B 108 1008 9 HOH HOH . 
I 4 HOH B 109 1009 179 HOH HOH . 
I 4 HOH B 110 1010 13 HOH HOH . 
I 4 HOH B 111 1011 63 HOH HOH . 
I 4 HOH B 112 1012 22 HOH HOH . 
I 4 HOH B 113 1013 131 HOH HOH . 
I 4 HOH B 114 1014 212 HOH HOH . 
I 4 HOH B 115 1015 59 HOH HOH . 
I 4 HOH B 116 1016 121 HOH HOH . 
I 4 HOH B 117 1017 223 HOH HOH . 
I 4 HOH B 118 1018 189 HOH HOH . 
J 4 HOH C 1 901 83 HOH HOH . 
J 4 HOH C 2 902 192 HOH HOH . 
J 4 HOH C 3 903 229 HOH HOH . 
J 4 HOH C 4 904 127 HOH HOH . 
J 4 HOH C 5 905 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 81.455 26.849 46.296 1 61.31 ? C1 EDO 801 B 1 
HETATM 2 O O1 EDO . . . E 3 82.454 27.368 45.486 1 67.37 ? O1 EDO 801 B 1 
HETATM 3 C C2 EDO . . . E 3 80.205 27.66 46.31 1 61.26 ? C2 EDO 801 B 1 
HETATM 4 O O2 EDO . . . E 3 79.44 27.472 47.501 1 56.26 ? O2 EDO 801 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#