data_8T56
#
_model_server_result.job_id            5Zlp_l3oel-L35FCOeCvcQ 
_model_server_result.datetime_utc      '2024-11-04 22:45:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":812}' 
#
_entry.id    8T56 
#
_exptl.entry_id    8T56 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 V N N 
? 5 HA N N 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 248 n n 
O3 P1 LBN sing 249 n n 
O2 C9 LBN sing 250 n n 
O2 P1 LBN sing 251 n n 
C9 C6 LBN sing 252 n n 
O4 P1 LBN doub 253 n n 
P1 O1 LBN sing 254 n n 
C6 N1 LBN sing 255 n n 
N1 C15 LBN sing 256 n n 
N1 C18 LBN sing 257 n n 
O1 C1 LBN sing 258 n n 
C2 C1 LBN sing 259 n n 
C2 C3 LBN sing 260 n n 
C2 O7 LBN sing 261 n n 
C3 O5 LBN sing 262 n n 
O6 C25 LBN doub 263 n n 
O5 C25 LBN sing 264 n n 
O7 C34 LBN sing 265 n n 
C25 C26 LBN sing 266 n n 
C34 C35 LBN sing 267 n n 
C34 O8 LBN doub 268 n n 
C26 C27 LBN sing 269 n n 
C35 C36 LBN sing 270 n n 
C27 C28 LBN sing 271 n n 
C36 C37 LBN sing 272 n n 
C28 C29 LBN sing 273 n n 
C37 C38 LBN sing 274 n n 
C29 C30 LBN sing 275 n n 
C39 C38 LBN sing 276 n n 
C39 C40 LBN sing 277 n n 
C41 C40 LBN sing 278 n n 
C41 C42 LBN sing 279 n n 
C30 C31 LBN sing 280 n n 
C42 C5 LBN doub 281 z n 
C31 C32 LBN sing 282 n n 
C5 C8 LBN sing 283 n n 
C8 C11 LBN sing 284 n n 
C32 C33 LBN sing 285 n n 
C11 C14 LBN sing 286 n n 
C33 C4 LBN sing 287 n n 
C14 C17 LBN sing 288 n n 
C4 C7 LBN sing 289 n n 
C17 C20 LBN sing 290 n n 
C7 C10 LBN sing 291 n n 
C20 C22 LBN sing 292 n n 
C10 C13 LBN sing 293 n n 
C22 C23 LBN sing 294 n n 
C13 C16 LBN sing 295 n n 
C23 C24 LBN sing 296 n n 
C16 C19 LBN sing 297 n n 
C19 C21 LBN sing 298 n n 
C1 H1 LBN sing 299 n n 
C1 H2 LBN sing 300 n n 
C2 H3 LBN sing 301 n n 
C3 H4 LBN sing 302 n n 
C3 H5 LBN sing 303 n n 
C4 H6 LBN sing 304 n n 
C4 H7 LBN sing 305 n n 
C5 H8 LBN sing 306 n n 
C6 H9 LBN sing 307 n n 
C6 H10 LBN sing 308 n n 
C7 H11 LBN sing 309 n n 
C7 H12 LBN sing 310 n n 
C8 H13 LBN sing 311 n n 
C8 H14 LBN sing 312 n n 
C9 H15 LBN sing 313 n n 
C9 H16 LBN sing 314 n n 
C10 H17 LBN sing 315 n n 
C10 H18 LBN sing 316 n n 
C11 H19 LBN sing 317 n n 
C12 H20 LBN sing 318 n n 
C12 H21 LBN sing 319 n n 
C12 H22 LBN sing 320 n n 
C13 H23 LBN sing 321 n n 
C13 H24 LBN sing 322 n n 
C14 H25 LBN sing 323 n n 
C15 H26 LBN sing 324 n n 
C15 H27 LBN sing 325 n n 
C15 H28 LBN sing 326 n n 
C16 H30 LBN sing 327 n n 
C16 H31 LBN sing 328 n n 
C17 H32 LBN sing 329 n n 
C17 H33 LBN sing 330 n n 
C18 H34 LBN sing 331 n n 
C18 H35 LBN sing 332 n n 
C18 H36 LBN sing 333 n n 
C19 H37 LBN sing 334 n n 
C19 H38 LBN sing 335 n n 
C20 H39 LBN sing 336 n n 
C20 H40 LBN sing 337 n n 
C21 H41 LBN sing 338 n n 
C21 H42 LBN sing 339 n n 
C21 H43 LBN sing 340 n n 
C22 H44 LBN sing 341 n n 
C22 H45 LBN sing 342 n n 
C23 H46 LBN sing 343 n n 
C23 H47 LBN sing 344 n n 
C24 H48 LBN sing 345 n n 
C24 H49 LBN sing 346 n n 
C24 H50 LBN sing 347 n n 
C26 H51 LBN sing 348 n n 
C26 H52 LBN sing 349 n n 
C27 H53 LBN sing 350 n n 
C27 H54 LBN sing 351 n n 
C28 H55 LBN sing 352 n n 
C28 H56 LBN sing 353 n n 
C29 H57 LBN sing 354 n n 
C29 H58 LBN sing 355 n n 
C30 H59 LBN sing 356 n n 
C30 H60 LBN sing 357 n n 
C31 H61 LBN sing 358 n n 
C31 H62 LBN sing 359 n n 
C32 H63 LBN sing 360 n n 
C32 H64 LBN sing 361 n n 
C33 H65 LBN sing 362 n n 
C33 H66 LBN sing 363 n n 
C35 H67 LBN sing 364 n n 
C35 H68 LBN sing 365 n n 
C36 H69 LBN sing 366 n n 
C36 H70 LBN sing 367 n n 
C37 H71 LBN sing 368 n n 
C37 H72 LBN sing 369 n n 
C38 H73 LBN sing 370 n n 
C38 H74 LBN sing 371 n n 
C39 H75 LBN sing 372 n n 
C40 H76 LBN sing 373 n n 
C41 H77 LBN sing 374 n n 
C41 H78 LBN sing 375 n n 
C42 H79 LBN sing 376 n n 
C11 H80 LBN sing 377 n n 
C14 H81 LBN sing 378 n n 
C39 H82 LBN sing 379 n n 
C40 H83 LBN sing 380 n n 
#
_atom_sites.entry_id                     8T56 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 3 Y01 A 1 801 805 Y01 Y01 . 
L 4 PLM A 1 802 806 PLM PLM . 
M 4 PLM A 1 803 807 PLM PLM . 
N 4 PLM A 1 804 808 PLM PLM . 
O 4 PLM A 1 805 809 PLM PLM . 
P 4 PLM A 1 806 810 PLM PLM . 
Q 4 PLM A 1 807 811 PLM PLM . 
R 4 PLM A 1 808 812 PLM PLM . 
S 4 PLM A 1 809 813 PLM PLM . 
T 4 PLM A 1 810 814 PLM PLM . 
U 4 PLM A 1 811 818 PLM PLM . 
V 5 LBN A 1 812 819 LBN LBN . 
W 3 Y01 B 1 801 805 Y01 Y01 . 
X 4 PLM B 1 802 806 PLM PLM . 
Y 4 PLM B 1 803 807 PLM PLM . 
Z 4 PLM B 1 804 808 PLM PLM . 
AA 4 PLM B 1 805 809 PLM PLM . 
BA 4 PLM B 1 806 810 PLM PLM . 
CA 4 PLM B 1 807 811 PLM PLM . 
DA 4 PLM B 1 808 812 PLM PLM . 
EA 4 PLM B 1 809 813 PLM PLM . 
FA 4 PLM B 1 810 814 PLM PLM . 
GA 4 PLM B 1 811 818 PLM PLM . 
HA 5 LBN B 1 812 819 LBN LBN . 
IA 6 CLR C 1 801 801 CLR CLR . 
JA 6 CLR D 1 101 802 CLR CLR . 
KA 4 PLM D 1 102 816 PLM PLM . 
LA 4 PLM D 1 103 817 PLM PLM . 
MA 6 CLR E 1 101 804 CLR CLR . 
NA 4 PLM E 1 102 815 PLM PLM . 
OA 6 CLR G 1 801 801 CLR CLR . 
PA 6 CLR H 1 101 802 CLR CLR . 
QA 4 PLM H 1 102 816 PLM PLM . 
RA 4 PLM H 1 103 817 PLM PLM . 
SA 6 CLR I 1 101 804 CLR CLR . 
TA 4 PLM I 1 102 815 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . V 5 90.865 92.85 118.235 1 26.99 ? C1 LBN 812 A 1 
HETATM 2 N N1 LBN . . . V 5 90.455 97.851 123.881 1 16.61 ? N1 LBN 812 A 1 
HETATM 3 P P1 LBN . . . V 5 89.802 93.31 120.851 1 30.52 ? P1 LBN 812 A 1 
HETATM 4 C C2 LBN . . . V 5 92.146 93.148 117.264 1 27.37 ? C2 LBN 812 A 1 
HETATM 5 C C3 LBN . . . V 5 93.532 93.032 118.027 1 29.72 ? C3 LBN 812 A 1 
HETATM 6 C C4 LBN . . . V 5 89.788 91.219 126.339 1 34.76 ? C4 LBN 812 A 1 
HETATM 7 C C5 LBN . . . V 5 99.141 96.166 116.315 1 19.08 ? C5 LBN 812 A 1 
HETATM 8 C C6 LBN . . . V 5 89.888 96.988 122.63 1 15.05 ? C6 LBN 812 A 1 
HETATM 9 O O1 LBN . . . V 5 90.797 93.58 119.449 1 26.34 ? O1 LBN 812 A 1 
HETATM 10 C C7 LBN . . . V 5 89.093 90.504 127.548 1 38.43 ? C7 LBN 812 A 1 
HETATM 11 C C8 LBN . . . V 5 99.914 97.414 115.958 1 16.39 ? C8 LBN 812 A 1 
HETATM 12 C C9 LBN . . . V 5 89.516 95.431 122.786 1 20.52 ? C9 LBN 812 A 1 
HETATM 13 O O2 LBN . . . V 5 89.201 94.902 121.561 1 21.13 ? O2 LBN 812 A 1 
HETATM 14 C C10 LBN . . . V 5 88.956 88.933 127.46 1 36.5 ? C10 LBN 812 A 1 
HETATM 15 C C11 LBN . . . V 5 100.09 98.52 117.037 1 12.93 ? C11 LBN 812 A 1 
HETATM 16 C C12 LBN . . . V 5 90.562 99.381 123.658 1 14.9 ? C12 LBN 812 A 1 
HETATM 17 O O3 LBN . . . V 5 90.678 92.815 121.92 1 30.69 ? O3 LBN 812 A 1 
HETATM 18 C C13 LBN . . . V 5 88.871 88.158 128.812 1 43.34 ? C13 LBN 812 A 1 
HETATM 19 C C14 LBN . . . V 5 101.273 98.388 118.023 1 13.55 ? C14 LBN 812 A 1 
HETATM 20 C C15 LBN . . . V 5 91.823 97.342 124.378 1 18.82 ? C15 LBN 812 A 1 
HETATM 21 O O4 LBN . . . V 5 88.513 92.772 120.427 1 27.56 ? O4 LBN 812 A 1 
HETATM 22 C C16 LBN . . . V 5 87.508 87.478 129.165 1 44.6 ? C16 LBN 812 A 1 
HETATM 23 C C17 LBN . . . V 5 101.742 99.729 118.639 1 13.16 ? C17 LBN 812 A 1 
HETATM 24 C C18 LBN . . . V 5 89.507 97.756 125.079 1 20.5 ? C18 LBN 812 A 1 
HETATM 25 C C19 LBN . . . V 5 87.439 85.951 128.859 1 45.2 ? C19 LBN 812 A 1 
HETATM 26 C C20 LBN . . . V 5 102.944 99.652 119.603 1 14.53 ? C20 LBN 812 A 1 
HETATM 27 C C21 LBN . . . V 5 86.22 85.219 129.434 1 44.21 ? C21 LBN 812 A 1 
HETATM 28 C C22 LBN . . . V 5 102.774 100.422 120.935 1 13.03 ? C22 LBN 812 A 1 
HETATM 29 C C23 LBN . . . V 5 102.908 99.561 122.216 1 19.26 ? C23 LBN 812 A 1 
HETATM 30 C C24 LBN . . . V 5 102.708 100.268 123.565 1 24.04 ? C24 LBN 812 A 1 
HETATM 31 C C25 LBN . . . V 5 95.33 94.586 118.823 1 24.53 ? C25 LBN 812 A 1 
HETATM 32 O O5 LBN . . . V 5 94.437 94.154 117.86 1 23 ? O5 LBN 812 A 1 
HETATM 33 C C26 LBN . . . V 5 94.782 95.115 120.16 1 21.96 ? C26 LBN 812 A 1 
HETATM 34 O O6 LBN . . . V 5 96.51 94.555 118.56 1 27.28 ? O6 LBN 812 A 1 
HETATM 35 C C27 LBN . . . V 5 94.966 94.242 121.445 1 26.46 ? C27 LBN 812 A 1 
HETATM 36 C C28 LBN . . . V 5 94.997 94.952 122.854 1 22.02 ? C28 LBN 812 A 1 
HETATM 37 C C29 LBN . . . V 5 93.889 94.598 123.911 1 18.51 ? C29 LBN 812 A 1 
HETATM 38 C C30 LBN . . . V 5 94.257 93.698 125.131 1 24.85 ? C30 LBN 812 A 1 
HETATM 39 C C31 LBN . . . V 5 93.205 93.518 126.291 1 27.62 ? C31 LBN 812 A 1 
HETATM 40 C C32 LBN . . . V 5 92.29 92.25 126.284 1 34.72 ? C32 LBN 812 A 1 
HETATM 41 C C33 LBN . . . V 5 90.762 92.422 126.63 1 34.1 ? C33 LBN 812 A 1 
HETATM 42 C C34 LBN . . . V 5 92.69 92.2 114.921 1 31.54 ? C34 LBN 812 A 1 
HETATM 43 O O7 LBN . . . V 5 92.135 92.141 116.201 1 31.09 ? O7 LBN 812 A 1 
HETATM 44 C C35 LBN . . . V 5 94.219 92.442 114.767 1 29.11 ? C35 LBN 812 A 1 
HETATM 45 O O8 LBN . . . V 5 91.911 92.053 113.98 1 34.62 ? O8 LBN 812 A 1 
HETATM 46 C C36 LBN . . . V 5 95.135 91.391 114.01 1 31.63 ? C36 LBN 812 A 1 
HETATM 47 C C37 LBN . . . V 5 95.926 91.807 112.713 1 32.52 ? C37 LBN 812 A 1 
HETATM 48 C C38 LBN . . . V 5 97.473 91.543 112.623 1 32.63 ? C38 LBN 812 A 1 
HETATM 49 C C39 LBN . . . V 5 98.411 92.808 112.7 1 27.69 ? C39 LBN 812 A 1 
HETATM 50 C C40 LBN . . . V 5 99.328 92.924 113.965 1 29.65 ? C40 LBN 812 A 1 
HETATM 51 C C41 LBN . . . V 5 99.699 94.362 114.505 1 24.32 ? C41 LBN 812 A 1 
HETATM 52 C C42 LBN . . . V 5 99.048 94.942 115.742 1 24.9 ? C42 LBN 812 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           52 
#