data_8T5K # _model_server_result.job_id CJ0jOW5pSRyfQ252NbaYoA _model_server_result.datetime_utc '2024-10-19 03:36:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8T5K # _exptl.entry_id 8T5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(4S)-8,9-dimethylthieno[3,2-e][1,2,4]triazolo[4,3-c]pyrimidin-3-yl]sulfanyl}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.96 _cell.angle_gamma 90 _cell.entry_id 8T5K _cell.length_a 90.34 _cell.length_b 77.11 _cell.length_c 36.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 85.332501 0 35.811598 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H10 N4 O2 S2' _chem_comp.formula_weight 294.353 _chem_comp.id YGI _chem_comp.mon_nstd_flag . _chem_comp.name '{[(4S)-8,9-dimethylthieno[3,2-e][1,2,4]triazolo[4,3-c]pyrimidin-3-yl]sulfanyl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 YGI doub 376 n n C1 O1 YGI sing 377 n n C1 C2 YGI sing 378 n n C2 S1 YGI sing 379 n n S1 C3 YGI sing 380 n n C5 N1 YGI sing 381 n y C5 N4 YGI doub 382 n y C3 N1 YGI sing 383 n y C3 N3 YGI doub 384 n y N1 C4 YGI sing 385 n y N4 C6 YGI sing 386 n y N3 N2 YGI sing 387 n y C4 N2 YGI doub 388 n y C4 C7 YGI sing 389 n y C6 C7 YGI doub 390 n y C6 S2 YGI sing 391 n y C7 C9 YGI sing 392 n y S2 C8 YGI sing 393 n y C9 C8 YGI doub 394 n y C9 C11 YGI sing 395 n n C8 C10 YGI sing 396 n n O1 H1 YGI sing 397 n n C2 H2 YGI sing 398 n n C2 H3 YGI sing 399 n n C5 H4 YGI sing 400 n n C10 H5 YGI sing 401 n n C10 H6 YGI sing 402 n n C10 H7 YGI sing 403 n n C11 H8 YGI sing 404 n n C11 H9 YGI sing 405 n n C11 H10 YGI sing 406 n n # _atom_sites.entry_id 8T5K _atom_sites.fract_transf_matrix[1][1] 0.011069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001548 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YGI B 1 401 1 YGI BDW . C 3 HOH B 1 501 55 HOH HOH . C 3 HOH B 2 502 33 HOH HOH . C 3 HOH B 3 503 78 HOH HOH . C 3 HOH B 4 504 3 HOH HOH . C 3 HOH B 5 505 74 HOH HOH . C 3 HOH B 6 506 86 HOH HOH . C 3 HOH B 7 507 31 HOH HOH . C 3 HOH B 8 508 35 HOH HOH . C 3 HOH B 9 509 71 HOH HOH . C 3 HOH B 10 510 17 HOH HOH . C 3 HOH B 11 511 20 HOH HOH . C 3 HOH B 12 512 24 HOH HOH . C 3 HOH B 13 513 75 HOH HOH . C 3 HOH B 14 514 12 HOH HOH . C 3 HOH B 15 515 32 HOH HOH . C 3 HOH B 16 516 13 HOH HOH . C 3 HOH B 17 517 64 HOH HOH . C 3 HOH B 18 518 5 HOH HOH . C 3 HOH B 19 519 69 HOH HOH . C 3 HOH B 20 520 70 HOH HOH . C 3 HOH B 21 521 2 HOH HOH . C 3 HOH B 22 522 4 HOH HOH . C 3 HOH B 23 523 27 HOH HOH . C 3 HOH B 24 524 15 HOH HOH . C 3 HOH B 25 525 14 HOH HOH . C 3 HOH B 26 526 11 HOH HOH . C 3 HOH B 27 527 1 HOH HOH . C 3 HOH B 28 528 34 HOH HOH . C 3 HOH B 29 529 52 HOH HOH . C 3 HOH B 30 530 46 HOH HOH . C 3 HOH B 31 531 28 HOH HOH . C 3 HOH B 32 532 16 HOH HOH . C 3 HOH B 33 533 7 HOH HOH . C 3 HOH B 34 534 72 HOH HOH . C 3 HOH B 35 535 25 HOH HOH . C 3 HOH B 36 536 21 HOH HOH . C 3 HOH B 37 537 22 HOH HOH . C 3 HOH B 38 538 18 HOH HOH . C 3 HOH B 39 539 23 HOH HOH . C 3 HOH B 40 540 37 HOH HOH . C 3 HOH B 41 541 43 HOH HOH . C 3 HOH B 42 542 8 HOH HOH . C 3 HOH B 43 543 44 HOH HOH . C 3 HOH B 44 544 26 HOH HOH . C 3 HOH B 45 545 45 HOH HOH . C 3 HOH B 46 546 62 HOH HOH . C 3 HOH B 47 547 87 HOH HOH . C 3 HOH B 48 548 58 HOH HOH . C 3 HOH B 49 549 67 HOH HOH . C 3 HOH B 50 550 6 HOH HOH . C 3 HOH B 51 551 9 HOH HOH . C 3 HOH B 52 552 83 HOH HOH . C 3 HOH B 53 553 50 HOH HOH . C 3 HOH B 54 554 10 HOH HOH . C 3 HOH B 55 555 51 HOH HOH . C 3 HOH B 56 556 88 HOH HOH . C 3 HOH B 57 557 40 HOH HOH . C 3 HOH B 58 558 30 HOH HOH . C 3 HOH B 59 559 29 HOH HOH . C 3 HOH B 60 560 42 HOH HOH . C 3 HOH B 61 561 41 HOH HOH . C 3 HOH B 62 562 38 HOH HOH . C 3 HOH B 63 563 36 HOH HOH . C 3 HOH B 64 564 85 HOH HOH . C 3 HOH B 65 565 59 HOH HOH . C 3 HOH B 66 566 39 HOH HOH . C 3 HOH B 67 567 19 HOH HOH . C 3 HOH B 68 568 53 HOH HOH . C 3 HOH B 69 569 73 HOH HOH . C 3 HOH B 70 570 56 HOH HOH . C 3 HOH B 71 571 82 HOH HOH . C 3 HOH B 72 572 47 HOH HOH . C 3 HOH B 73 573 54 HOH HOH . C 3 HOH B 74 574 84 HOH HOH . C 3 HOH B 75 575 65 HOH HOH . C 3 HOH B 76 576 77 HOH HOH . C 3 HOH B 77 577 49 HOH HOH . C 3 HOH B 78 578 80 HOH HOH . C 3 HOH B 79 579 48 HOH HOH . C 3 HOH B 80 580 66 HOH HOH . C 3 HOH B 81 581 63 HOH HOH . C 3 HOH B 82 582 61 HOH HOH . C 3 HOH B 83 583 57 HOH HOH . C 3 HOH B 84 584 76 HOH HOH . C 3 HOH B 85 585 68 HOH HOH . C 3 HOH B 86 586 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YGI . . . B 2 39.149 -4.558 14.308 1 45.91 ? C1 YGI 401 B 1 HETATM 2 N N1 YGI . . . B 2 38.907 -6.009 17.478 1 43.53 ? N1 YGI 401 B 1 HETATM 3 O O1 YGI . . . B 2 39.323 -5.807 14.406 1 41.18 ? O1 YGI 401 B 1 HETATM 4 C C2 YGI . . . B 2 37.761 -4.007 14.678 1 42.77 ? C2 YGI 401 B 1 HETATM 5 N N2 YGI . . . B 2 40.526 -4.852 18.366 1 41.74 ? N2 YGI 401 B 1 HETATM 6 O O2 YGI . . . B 2 40.103 -3.828 13.93 1 45.57 ? O2 YGI 401 B 1 HETATM 7 C C3 YGI . . . B 2 38.722 -4.702 17.219 1 41.04 ? C3 YGI 401 B 1 HETATM 8 N N3 YGI . . . B 2 39.707 -4.003 17.734 1 43.47 ? N3 YGI 401 B 1 HETATM 9 C C4 YGI . . . B 2 40.026 -6.084 18.193 1 38.19 ? C4 YGI 401 B 1 HETATM 10 N N4 YGI . . . B 2 38.615 -8.286 17.543 1 35.21 ? N4 YGI 401 B 1 HETATM 11 C C5 YGI . . . B 2 38.205 -7.095 17.151 1 39.23 ? C5 YGI 401 B 1 HETATM 12 C C6 YGI . . . B 2 39.709 -8.445 18.263 1 31.38 ? C6 YGI 401 B 1 HETATM 13 C C7 YGI . . . B 2 40.477 -7.34 18.621 1 36.82 ? C7 YGI 401 B 1 HETATM 14 C C8 YGI . . . B 2 41.797 -9.038 19.644 1 37.24 ? C8 YGI 401 B 1 HETATM 15 C C9 YGI . . . B 2 41.646 -7.658 19.392 1 36.5 ? C9 YGI 401 B 1 HETATM 16 C C10 YGI . . . B 2 42.9 -9.746 20.431 1 37.49 ? C10 YGI 401 B 1 HETATM 17 C C11 YGI . . . B 2 42.61 -6.579 19.888 1 40.62 ? C11 YGI 401 B 1 HETATM 18 S S1 YGI . . . B 2 37.374 -4.08 16.226 1 48.7 ? S1 YGI 401 B 1 HETATM 19 S S2 YGI . . . B 2 40.493 -9.791 18.89 1 41.31 ? S2 YGI 401 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #