data_8T5V # _model_server_result.job_id '_WlxFsBbeKnVbHfOCbwzhg' _model_server_result.datetime_utc '2024-11-25 00:45:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8T5V # _exptl.entry_id 8T5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Baloxavir acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T5V _cell.length_a 74.724 _cell.length_b 74.724 _cell.length_c 121.619 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O2 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O1 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O2 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O3 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? # _chem_comp.formula 'C24 H19 F2 N3 O4 S' _chem_comp.formula_weight 483.487 _chem_comp.id E4Z _chem_comp.mon_nstd_flag . _chem_comp.name 'Baloxavir acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O4 E4Z sing 83 n n C9 C10 E4Z sing 84 n n O4 C8 E4Z sing 85 n n C10 N3 E4Z sing 86 n n C8 C7 E4Z sing 87 n n O3 C6 E4Z doub 88 n n N3 C6 E4Z sing 89 n n N3 C7 E4Z sing 90 n n C6 C4 E4Z sing 91 n n C7 N2 E4Z sing 92 n n O2 C5 E4Z sing 93 n n C4 C5 E4Z doub 94 n n C4 N1 E4Z sing 95 n n C5 C1 E4Z sing 96 n n N2 N1 E4Z sing 97 n n N2 C11 E4Z sing 98 n n N1 C3 E4Z sing 99 n n C1 O1 E4Z doub 100 n n C1 C2 E4Z sing 101 n n C3 C2 E4Z doub 102 n n C11 C12 E4Z sing 103 n n C11 C16 E4Z sing 104 n n C21 C22 E4Z doub 105 n y C21 C12 E4Z sing 106 n y C22 C23 E4Z sing 107 n y C12 C13 E4Z doub 108 n y C23 F2 E4Z sing 109 n n C23 C24 E4Z doub 110 n y C13 C24 E4Z sing 111 n y C13 C14 E4Z sing 112 n n C24 F1 E4Z sing 113 n n C14 S3 E4Z sing 114 n n C16 C20 E4Z doub 115 n y C16 C15 E4Z sing 116 n y C20 C19 E4Z sing 117 n y S3 C15 E4Z sing 118 n n C15 C17 E4Z doub 119 n y C19 C18 E4Z doub 120 n y C17 C18 E4Z sing 121 n y C2 H1 E4Z sing 122 n n C7 H3 E4Z sing 123 n n C14 H4 E4Z sing 124 n n C14 H5 E4Z sing 125 n n C17 H6 E4Z sing 126 n n C18 H7 E4Z sing 127 n n C19 H8 E4Z sing 128 n n C20 H9 E4Z sing 129 n n C21 H10 E4Z sing 130 n n C22 H11 E4Z sing 131 n n C11 H12 E4Z sing 132 n n C8 H13 E4Z sing 133 n n C8 H14 E4Z sing 134 n n C9 H15 E4Z sing 135 n n C9 H16 E4Z sing 136 n n C10 H17 E4Z sing 137 n n C10 H18 E4Z sing 138 n n C3 H19 E4Z sing 139 n n O2 H20 E4Z sing 140 n n # _atom_sites.entry_id 8T5V _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0.007726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 E4Z A 1 303 303 E4Z LIG . E 4 HOH A 1 401 58 HOH HOH . E 4 HOH A 2 402 61 HOH HOH . E 4 HOH A 3 403 12 HOH HOH . E 4 HOH A 4 404 45 HOH HOH . E 4 HOH A 5 405 3 HOH HOH . E 4 HOH A 6 406 4 HOH HOH . E 4 HOH A 7 407 10 HOH HOH . E 4 HOH A 8 408 6 HOH HOH . E 4 HOH A 9 409 40 HOH HOH . E 4 HOH A 10 410 42 HOH HOH . E 4 HOH A 11 411 15 HOH HOH . E 4 HOH A 12 412 50 HOH HOH . E 4 HOH A 13 413 31 HOH HOH . E 4 HOH A 14 414 52 HOH HOH . E 4 HOH A 15 415 64 HOH HOH . E 4 HOH A 16 416 21 HOH HOH . E 4 HOH A 17 417 8 HOH HOH . E 4 HOH A 18 418 5 HOH HOH . E 4 HOH A 19 419 7 HOH HOH . E 4 HOH A 20 420 48 HOH HOH . E 4 HOH A 21 421 20 HOH HOH . E 4 HOH A 22 422 2 HOH HOH . E 4 HOH A 23 423 28 HOH HOH . E 4 HOH A 24 424 54 HOH HOH . E 4 HOH A 25 425 68 HOH HOH . E 4 HOH A 26 426 55 HOH HOH . E 4 HOH A 27 427 11 HOH HOH . E 4 HOH A 28 428 66 HOH HOH . E 4 HOH A 29 429 53 HOH HOH . E 4 HOH A 30 430 17 HOH HOH . E 4 HOH A 31 431 65 HOH HOH . E 4 HOH A 32 432 49 HOH HOH . E 4 HOH A 33 433 47 HOH HOH . E 4 HOH A 34 434 41 HOH HOH . E 4 HOH A 35 435 60 HOH HOH . E 4 HOH A 36 436 57 HOH HOH . E 4 HOH A 37 437 46 HOH HOH . E 4 HOH A 38 438 59 HOH HOH . E 4 HOH A 39 439 22 HOH HOH . E 4 HOH A 40 440 1 HOH HOH . E 4 HOH A 41 441 67 HOH HOH . E 4 HOH A 42 442 9 HOH HOH . E 4 HOH A 43 443 25 HOH HOH . E 4 HOH A 44 444 44 HOH HOH . E 4 HOH A 45 445 62 HOH HOH . E 4 HOH A 46 446 24 HOH HOH . E 4 HOH A 47 447 13 HOH HOH . E 4 HOH A 48 448 56 HOH HOH . E 4 HOH A 49 449 63 HOH HOH . E 4 HOH A 50 450 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4Z . . . D 3 20.651 17.877 -12.998 1 44.01 ? C1 E4Z 303 A 1 HETATM 2 N N1 E4Z . . . D 3 20.54 17.833 -15.75 1 46.06 ? N1 E4Z 303 A 1 HETATM 3 O O1 E4Z . . . D 3 20.724 17.923 -11.828 1 47.31 ? O1 E4Z 303 A 1 HETATM 4 C C2 E4Z . . . D 3 21.59 18.602 -13.739 1 48.45 ? C2 E4Z 303 A 1 HETATM 5 O O2 E4Z . . . D 3 18.723 16.409 -12.851 1 45.29 ? O2 E4Z 303 A 1 HETATM 6 O O3 E4Z . . . D 3 17.795 15.614 -15.248 1 40.3 ? O3 E4Z 303 A 1 HETATM 7 C C4 E4Z . . . D 3 19.663 17.12 -15.046 1 46.23 ? C4 E4Z 303 A 1 HETATM 8 O O4 E4Z . . . D 3 17.092 18.682 -18.109 1 58.04 ? O4 E4Z 303 A 1 HETATM 9 C C5 E4Z . . . D 3 19.661 17.128 -13.626 1 44.74 ? C5 E4Z 303 A 1 HETATM 10 C C6 E4Z . . . D 3 18.543 16.374 -15.761 1 46.44 ? C6 E4Z 303 A 1 HETATM 11 C C7 E4Z . . . D 3 19.233 17.721 -17.841 1 50.35 ? C7 E4Z 303 A 1 HETATM 12 C C13 E4Z . . . D 3 22.181 16.729 -19.867 1 47.52 ? C13 E4Z 303 A 1 HETATM 13 C C14 E4Z . . . D 3 22.537 18.174 -19.463 1 51.48 ? C14 E4Z 303 A 1 HETATM 14 C C15 E4Z . . . D 3 23.553 16.794 -16.837 1 46.71 ? C15 E4Z 303 A 1 HETATM 15 C C16 E4Z . . . D 3 22.363 16.154 -16.577 1 45.47 ? C16 E4Z 303 A 1 HETATM 16 C C17 E4Z . . . D 3 24.686 16.64 -16.024 1 42.78 ? C17 E4Z 303 A 1 HETATM 17 C C18 E4Z . . . D 3 24.639 15.812 -14.926 1 37.62 ? C18 E4Z 303 A 1 HETATM 18 C C19 E4Z . . . D 3 23.468 15.145 -14.626 1 37.65 ? C19 E4Z 303 A 1 HETATM 19 C C20 E4Z . . . D 3 22.349 15.302 -15.421 1 44.92 ? C20 E4Z 303 A 1 HETATM 20 C C21 E4Z . . . D 3 21.251 14.587 -19.323 1 49 ? C21 E4Z 303 A 1 HETATM 21 C C22 E4Z . . . D 3 21.605 14.093 -20.589 1 51.51 ? C22 E4Z 303 A 1 HETATM 22 C C23 E4Z . . . D 3 22.273 14.938 -21.499 1 50.43 ? C23 E4Z 303 A 1 HETATM 23 C C24 E4Z . . . D 3 22.573 16.253 -21.142 1 50.54 ? C24 E4Z 303 A 1 HETATM 24 F F2 E4Z . . . D 3 22.632 14.482 -22.734 1 54.59 ? F2 E4Z 303 A 1 HETATM 25 C C12 E4Z . . . D 3 21.541 15.93 -18.963 1 49.02 ? C12 E4Z 303 A 1 HETATM 26 F F1 E4Z . . . D 3 23.219 17.069 -22.015 1 55.34 ? F1 E4Z 303 A 1 HETATM 27 S S3 E4Z . . . D 3 23.846 17.955 -18.218 1 51.84 ? S3 E4Z 303 A 1 HETATM 28 C C11 E4Z . . . D 3 21.124 16.414 -17.502 1 50.09 ? C11 E4Z 303 A 1 HETATM 29 N N2 E4Z . . . D 3 20.533 17.744 -17.196 1 48.29 ? N2 E4Z 303 A 1 HETATM 30 C C8 E4Z . . . D 3 18.441 19.022 -17.928 1 55.81 ? C8 E4Z 303 A 1 HETATM 31 C C9 E4Z . . . D 3 16.719 17.433 -18.682 1 54.57 ? C9 E4Z 303 A 1 HETATM 32 C C10 E4Z . . . D 3 17.317 16.183 -18.004 1 50.43 ? C10 E4Z 303 A 1 HETATM 33 N N3 E4Z . . . D 3 18.362 16.74 -17.15 1 50.53 ? N3 E4Z 303 A 1 HETATM 34 C C3 E4Z . . . D 3 21.512 18.57 -15.132 1 44.9 ? C3 E4Z 303 A 1 HETATM 35 H H1 E4Z . . . D 3 22.362 19.175 -13.242 1 58.7 ? H1 E4Z 303 A 1 HETATM 36 H H3 E4Z . . . D 3 19.513 17.522 -18.868 1 60.99 ? H3 E4Z 303 A 1 HETATM 37 H H4 E4Z . . . D 3 22.918 18.725 -20.32 1 62.33 ? H4 E4Z 303 A 1 HETATM 38 H H5 E4Z . . . D 3 21.674 18.668 -19.022 1 62.33 ? H5 E4Z 303 A 1 HETATM 39 H H6 E4Z . . . D 3 25.598 17.173 -16.261 1 51.9 ? H6 E4Z 303 A 1 HETATM 40 H H7 E4Z . . . D 3 25.515 15.684 -14.301 1 45.71 ? H7 E4Z 303 A 1 HETATM 41 H H8 E4Z . . . D 3 23.425 14.494 -13.76 1 45.74 ? H8 E4Z 303 A 1 HETATM 42 H H9 E4Z . . . D 3 21.442 14.771 -15.167 1 54.47 ? H9 E4Z 303 A 1 HETATM 43 H H10 E4Z . . . D 3 20.753 13.938 -18.614 1 59.36 ? H10 E4Z 303 A 1 HETATM 44 H H11 E4Z . . . D 3 21.366 13.071 -20.864 1 62.38 ? H11 E4Z 303 A 1 HETATM 45 H H12 E4Z . . . D 3 20.195 15.885 -17.321 1 60.68 ? H12 E4Z 303 A 1 HETATM 46 H H13 E4Z . . . D 3 18.792 19.615 -18.765 1 67.54 ? H13 E4Z 303 A 1 HETATM 47 H H14 E4Z . . . D 3 18.562 19.592 -17.014 1 67.54 ? H14 E4Z 303 A 1 HETATM 48 H H15 E4Z . . . D 3 15.636 17.353 -18.638 1 66.04 ? H15 E4Z 303 A 1 HETATM 49 H H16 E4Z . . . D 3 17.035 17.434 -19.723 1 66.04 ? H16 E4Z 303 A 1 HETATM 50 H H17 E4Z . . . D 3 16.568 15.661 -17.417 1 61.08 ? H17 E4Z 303 A 1 HETATM 51 H H18 E4Z . . . D 3 17.734 15.501 -18.738 1 61.08 ? H18 E4Z 303 A 1 HETATM 52 H H19 E4Z . . . D 3 22.222 19.131 -15.725 1 54.44 ? H19 E4Z 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #