data_8T5W # _model_server_result.job_id 5rVG5NGyjK4X0vQzqoWxtQ _model_server_result.datetime_utc '2024-11-06 12:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8T5W # _exptl.entry_id 8T5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Baloxavir acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T5W _cell.length_a 75.111 _cell.length_b 75.111 _cell.length_c 121.444 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A OE1 GLU 74 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O2 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O1 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O2 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O3 E4Z . A E4Z 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc11 C MN MN . A MN 302 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 C MN MN . A MN 302 1_555 F O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C24 H19 F2 N3 O4 S' _chem_comp.formula_weight 483.487 _chem_comp.id E4Z _chem_comp.mon_nstd_flag . _chem_comp.name 'Baloxavir acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O4 E4Z sing 83 n n C9 C10 E4Z sing 84 n n O4 C8 E4Z sing 85 n n C10 N3 E4Z sing 86 n n C8 C7 E4Z sing 87 n n O3 C6 E4Z doub 88 n n N3 C6 E4Z sing 89 n n N3 C7 E4Z sing 90 n n C6 C4 E4Z sing 91 n n C7 N2 E4Z sing 92 n n O2 C5 E4Z sing 93 n n C4 C5 E4Z doub 94 n n C4 N1 E4Z sing 95 n n C5 C1 E4Z sing 96 n n N2 N1 E4Z sing 97 n n N2 C11 E4Z sing 98 n n N1 C3 E4Z sing 99 n n C1 O1 E4Z doub 100 n n C1 C2 E4Z sing 101 n n C3 C2 E4Z doub 102 n n C11 C12 E4Z sing 103 n n C11 C16 E4Z sing 104 n n C21 C22 E4Z doub 105 n y C21 C12 E4Z sing 106 n y C22 C23 E4Z sing 107 n y C12 C13 E4Z doub 108 n y C23 F2 E4Z sing 109 n n C23 C24 E4Z doub 110 n y C13 C24 E4Z sing 111 n y C13 C14 E4Z sing 112 n n C24 F1 E4Z sing 113 n n C14 S3 E4Z sing 114 n n C16 C20 E4Z doub 115 n y C16 C15 E4Z sing 116 n y C20 C19 E4Z sing 117 n y S3 C15 E4Z sing 118 n n C15 C17 E4Z doub 119 n y C19 C18 E4Z doub 120 n y C17 C18 E4Z sing 121 n y C2 H1 E4Z sing 122 n n C7 H3 E4Z sing 123 n n C14 H4 E4Z sing 124 n n C14 H5 E4Z sing 125 n n C17 H6 E4Z sing 126 n n C18 H7 E4Z sing 127 n n C19 H8 E4Z sing 128 n n C20 H9 E4Z sing 129 n n C21 H10 E4Z sing 130 n n C22 H11 E4Z sing 131 n n C11 H12 E4Z sing 132 n n C8 H13 E4Z sing 133 n n C8 H14 E4Z sing 134 n n C9 H15 E4Z sing 135 n n C9 H16 E4Z sing 136 n n C10 H17 E4Z sing 137 n n C10 H18 E4Z sing 138 n n C3 H19 E4Z sing 139 n n O2 H20 E4Z sing 140 n n # _atom_sites.entry_id 8T5W _atom_sites.fract_transf_matrix[1][1] 0.013314 _atom_sites.fract_transf_matrix[1][2] 0.007687 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 E4Z A 1 303 303 E4Z LIG . E 3 E4Z A 1 304 304 E4Z LIG . F 4 HOH A 1 401 75 HOH HOH . F 4 HOH A 2 402 54 HOH HOH . F 4 HOH A 3 403 58 HOH HOH . F 4 HOH A 4 404 64 HOH HOH . F 4 HOH A 5 405 62 HOH HOH . F 4 HOH A 6 406 72 HOH HOH . F 4 HOH A 7 407 2 HOH HOH . F 4 HOH A 8 408 42 HOH HOH . F 4 HOH A 9 409 66 HOH HOH . F 4 HOH A 10 410 63 HOH HOH . F 4 HOH A 11 411 45 HOH HOH . F 4 HOH A 12 412 31 HOH HOH . F 4 HOH A 13 413 53 HOH HOH . F 4 HOH A 14 414 93 HOH HOH . F 4 HOH A 15 415 60 HOH HOH . F 4 HOH A 16 416 11 HOH HOH . F 4 HOH A 17 417 104 HOH HOH . F 4 HOH A 18 418 67 HOH HOH . F 4 HOH A 19 419 59 HOH HOH . F 4 HOH A 20 420 19 HOH HOH . F 4 HOH A 21 421 6 HOH HOH . F 4 HOH A 22 422 3 HOH HOH . F 4 HOH A 23 423 96 HOH HOH . F 4 HOH A 24 424 38 HOH HOH . F 4 HOH A 25 425 12 HOH HOH . F 4 HOH A 26 426 48 HOH HOH . F 4 HOH A 27 427 8 HOH HOH . F 4 HOH A 28 428 15 HOH HOH . F 4 HOH A 29 429 46 HOH HOH . F 4 HOH A 30 430 24 HOH HOH . F 4 HOH A 31 431 40 HOH HOH . F 4 HOH A 32 432 39 HOH HOH . F 4 HOH A 33 433 5 HOH HOH . F 4 HOH A 34 434 17 HOH HOH . F 4 HOH A 35 435 1 HOH HOH . F 4 HOH A 36 436 92 HOH HOH . F 4 HOH A 37 437 25 HOH HOH . F 4 HOH A 38 438 34 HOH HOH . F 4 HOH A 39 439 26 HOH HOH . F 4 HOH A 40 440 47 HOH HOH . F 4 HOH A 41 441 35 HOH HOH . F 4 HOH A 42 442 86 HOH HOH . F 4 HOH A 43 443 36 HOH HOH . F 4 HOH A 44 444 44 HOH HOH . F 4 HOH A 45 445 27 HOH HOH . F 4 HOH A 46 446 89 HOH HOH . F 4 HOH A 47 447 13 HOH HOH . F 4 HOH A 48 448 41 HOH HOH . F 4 HOH A 49 449 55 HOH HOH . F 4 HOH A 50 450 57 HOH HOH . F 4 HOH A 51 451 105 HOH HOH . F 4 HOH A 52 452 100 HOH HOH . F 4 HOH A 53 453 95 HOH HOH . F 4 HOH A 54 454 30 HOH HOH . F 4 HOH A 55 455 102 HOH HOH . F 4 HOH A 56 456 18 HOH HOH . F 4 HOH A 57 457 9 HOH HOH . F 4 HOH A 58 458 61 HOH HOH . F 4 HOH A 59 459 91 HOH HOH . F 4 HOH A 60 460 106 HOH HOH . F 4 HOH A 61 461 50 HOH HOH . F 4 HOH A 62 462 103 HOH HOH . F 4 HOH A 63 463 7 HOH HOH . F 4 HOH A 64 464 51 HOH HOH . F 4 HOH A 65 465 77 HOH HOH . F 4 HOH A 66 466 52 HOH HOH . F 4 HOH A 67 467 22 HOH HOH . F 4 HOH A 68 468 69 HOH HOH . F 4 HOH A 69 469 97 HOH HOH . F 4 HOH A 70 470 70 HOH HOH . F 4 HOH A 71 471 90 HOH HOH . F 4 HOH A 72 472 49 HOH HOH . F 4 HOH A 73 473 88 HOH HOH . F 4 HOH A 74 474 76 HOH HOH . F 4 HOH A 75 475 21 HOH HOH . F 4 HOH A 76 476 16 HOH HOH . F 4 HOH A 77 477 56 HOH HOH . F 4 HOH A 78 478 68 HOH HOH . F 4 HOH A 79 479 14 HOH HOH . F 4 HOH A 80 480 10 HOH HOH . F 4 HOH A 81 481 101 HOH HOH . F 4 HOH A 82 482 94 HOH HOH . F 4 HOH A 83 483 83 HOH HOH . F 4 HOH A 84 484 43 HOH HOH . F 4 HOH A 85 485 73 HOH HOH . F 4 HOH A 86 486 28 HOH HOH . F 4 HOH A 87 487 32 HOH HOH . F 4 HOH A 88 488 71 HOH HOH . F 4 HOH A 89 489 74 HOH HOH . F 4 HOH A 90 490 87 HOH HOH . F 4 HOH A 91 491 84 HOH HOH . F 4 HOH A 92 492 99 HOH HOH . F 4 HOH A 93 493 65 HOH HOH . F 4 HOH A 94 494 33 HOH HOH . F 4 HOH A 95 495 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4Z . . . D 3 20.713 18.131 -12.868 1 31.3 ? C1 E4Z 303 A 1 HETATM 2 N N1 E4Z . . . D 3 20.213 17.852 -15.497 1 30.44 ? N1 E4Z 303 A 1 HETATM 3 O O1 E4Z . . . D 3 20.926 18.236 -11.705 1 26.84 ? O1 E4Z 303 A 1 HETATM 4 C C2 E4Z . . . D 3 21.471 18.893 -13.773 1 33.21 ? C2 E4Z 303 A 1 HETATM 5 O O2 E4Z . . . D 3 19.033 16.512 -12.349 1 28.32 ? O2 E4Z 303 A 1 HETATM 6 O O3 E4Z . . . D 3 17.609 15.58 -14.669 1 29.75 ? O3 E4Z 303 A 1 HETATM 7 C C4 E4Z . . . D 3 19.505 17.084 -14.687 1 29.92 ? C4 E4Z 303 A 1 HETATM 8 O O4 E4Z . . . D 3 16.692 18.193 -18.16 1 39.48 ? O4 E4Z 303 A 1 HETATM 9 C C5 E4Z . . . D 3 19.723 17.259 -13.3 1 30.36 ? C5 E4Z 303 A 1 HETATM 10 C C6 E4Z . . . D 3 18.387 16.221 -15.288 1 32.29 ? C6 E4Z 303 A 1 HETATM 11 C C7 E4Z . . . D 3 18.878 17.274 -17.542 1 32.46 ? C7 E4Z 303 A 1 HETATM 12 C C13 E4Z . . . D 3 22.067 16.891 -19.681 1 35.54 ? C13 E4Z 303 A 1 HETATM 13 C C14 E4Z . . . D 3 22.586 18.326 -19.504 1 40.27 ? C14 E4Z 303 A 1 HETATM 14 C C15 E4Z . . . D 3 23.644 17.2 -16.709 1 32.65 ? C15 E4Z 303 A 1 HETATM 15 C C16 E4Z . . . D 3 22.466 16.608 -16.449 1 33.61 ? C16 E4Z 303 A 1 HETATM 16 C C17 E4Z . . . D 3 24.793 17.021 -15.939 1 31.9 ? C17 E4Z 303 A 1 HETATM 17 C C18 E4Z . . . D 3 24.729 16.171 -14.829 1 31.92 ? C18 E4Z 303 A 1 HETATM 18 C C19 E4Z . . . D 3 23.524 15.544 -14.536 1 30.86 ? C19 E4Z 303 A 1 HETATM 19 C C20 E4Z . . . D 3 22.392 15.724 -15.328 1 28.43 ? C20 E4Z 303 A 1 HETATM 20 C C21 E4Z . . . D 3 21.057 14.864 -18.908 1 34.1 ? C21 E4Z 303 A 1 HETATM 21 C C22 E4Z . . . D 3 21.268 14.293 -20.185 1 39.84 ? C22 E4Z 303 A 1 HETATM 22 C C23 E4Z . . . D 3 21.904 15.058 -21.192 1 41.5 ? C23 E4Z 303 A 1 HETATM 23 C C24 E4Z . . . D 3 22.3 16.346 -20.927 1 38.14 ? C24 E4Z 303 A 1 HETATM 24 F F2 E4Z . . . D 3 22.153 14.577 -22.451 1 38.44 ? F2 E4Z 303 A 1 HETATM 25 C C12 E4Z . . . D 3 21.445 16.194 -18.701 1 36.69 ? C12 E4Z 303 A 1 HETATM 26 F F1 E4Z . . . D 3 22.899 17.117 -21.852 1 42.67 ? F1 E4Z 303 A 1 HETATM 27 S S3 E4Z . . . D 3 23.788 18.325 -18.129 1 35.18 ? S3 E4Z 303 A 1 HETATM 28 C C11 E4Z . . . D 3 21.321 17.059 -17.414 1 39.72 ? C11 E4Z 303 A 1 HETATM 29 N N2 E4Z . . . D 3 20.081 17.591 -16.871 1 32.08 ? N2 E4Z 303 A 1 HETATM 30 C C8 E4Z . . . D 3 18.005 18.524 -17.787 1 36.32 ? C8 E4Z 303 A 1 HETATM 31 C C9 E4Z . . . D 3 16.085 16.949 -17.796 1 39.37 ? C9 E4Z 303 A 1 HETATM 32 C C10 E4Z . . . D 3 16.987 15.746 -17.399 1 37.54 ? C10 E4Z 303 A 1 HETATM 33 N N3 E4Z . . . D 3 18.109 16.364 -16.705 1 30.54 ? N3 E4Z 303 A 1 HETATM 34 C C3 E4Z . . . D 3 21.19 18.72 -15.106 1 29.56 ? C3 E4Z 303 A 1 HETATM 35 H H1 E4Z . . . D 3 22.236 19.58 -13.438 1 39.8 ? H1 E4Z 303 A 1 HETATM 36 H H3 E4Z . . . D 3 19.16 16.881 -18.511 1 38.91 ? H3 E4Z 303 A 1 HETATM 37 H H4 E4Z . . . D 3 21.755 18.981 -19.255 1 48.28 ? H4 E4Z 303 A 1 HETATM 38 H H5 E4Z . . . D 3 23.085 18.643 -20.417 1 48.28 ? H5 E4Z 303 A 1 HETATM 39 H H6 E4Z . . . D 3 25.713 17.529 -16.194 1 38.23 ? H6 E4Z 303 A 1 HETATM 40 H H7 E4Z . . . D 3 25.602 16.005 -14.21 1 38.25 ? H7 E4Z 303 A 1 HETATM 41 H H8 E4Z . . . D 3 23.464 14.897 -13.668 1 36.98 ? H8 E4Z 303 A 1 HETATM 42 H H9 E4Z . . . D 3 21.472 15.203 -15.099 1 34.06 ? H9 E4Z 303 A 1 HETATM 43 H H10 E4Z . . . D 3 20.607 14.288 -18.11 1 40.86 ? H10 E4Z 303 A 1 HETATM 44 H H11 E4Z . . . D 3 20.946 13.278 -20.391 1 47.75 ? H11 E4Z 303 A 1 HETATM 45 H H12 E4Z . . . D 3 21.322 18.1 -17.719 1 47.61 ? H12 E4Z 303 A 1 HETATM 46 H H13 E4Z . . . D 3 17.973 19.112 -16.877 1 43.53 ? H13 E4Z 303 A 1 HETATM 47 H H14 E4Z . . . D 3 18.454 19.115 -18.577 1 43.53 ? H14 E4Z 303 A 1 HETATM 48 H H15 E4Z . . . D 3 15.482 16.63 -18.642 1 47.19 ? H15 E4Z 303 A 1 HETATM 49 H H16 E4Z . . . D 3 15.433 17.15 -16.949 1 47.19 ? H16 E4Z 303 A 1 HETATM 50 H H17 E4Z . . . D 3 17.324 15.208 -18.28 1 44.99 ? H17 E4Z 303 A 1 HETATM 51 H H18 E4Z . . . D 3 16.455 15.061 -16.745 1 44.99 ? H18 E4Z 303 A 1 HETATM 52 H H19 E4Z . . . D 3 21.747 19.275 -15.85 1 35.43 ? H19 E4Z 303 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 52 #