data_8T68 # _model_server_result.job_id kPDNdnZ7CfaPEA4_GVuf8g _model_server_result.datetime_utc '2024-12-23 06:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8T68 # _exptl.entry_id 8T68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T68 _cell.length_a 36.149 _cell.length_b 75.528 _cell.length_c 96.807 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 214 A CYS 275 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A SG CYS 258 A CYS 319 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A SG CYS 260 A CYS 321 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 A SG CYS 263 A CYS 324 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 8T68 _atom_sites.fract_transf_matrix[1][1] 0.027663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 SAM A 1 402 402 SAM SAM . D 4 ZKI A 1 403 501 ZKI 111 . E 5 HOH A 1 501 62 HOH HOH . E 5 HOH A 2 502 39 HOH HOH . E 5 HOH A 3 503 17 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 36 HOH HOH . E 5 HOH A 6 506 37 HOH HOH . E 5 HOH A 7 507 64 HOH HOH . E 5 HOH A 8 508 57 HOH HOH . E 5 HOH A 9 509 16 HOH HOH . E 5 HOH A 10 510 8 HOH HOH . E 5 HOH A 11 511 13 HOH HOH . E 5 HOH A 12 512 63 HOH HOH . E 5 HOH A 13 513 22 HOH HOH . E 5 HOH A 14 514 54 HOH HOH . E 5 HOH A 15 515 3 HOH HOH . E 5 HOH A 16 516 69 HOH HOH . E 5 HOH A 17 517 33 HOH HOH . E 5 HOH A 18 518 19 HOH HOH . E 5 HOH A 19 519 32 HOH HOH . E 5 HOH A 20 520 45 HOH HOH . E 5 HOH A 21 521 60 HOH HOH . E 5 HOH A 22 522 23 HOH HOH . E 5 HOH A 23 523 1 HOH HOH . E 5 HOH A 24 524 43 HOH HOH . E 5 HOH A 25 525 30 HOH HOH . E 5 HOH A 26 526 67 HOH HOH . E 5 HOH A 27 527 21 HOH HOH . E 5 HOH A 28 528 2 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 68 HOH HOH . E 5 HOH A 31 531 20 HOH HOH . E 5 HOH A 32 532 4 HOH HOH . E 5 HOH A 33 533 26 HOH HOH . E 5 HOH A 34 534 40 HOH HOH . E 5 HOH A 35 535 27 HOH HOH . E 5 HOH A 36 536 49 HOH HOH . E 5 HOH A 37 537 66 HOH HOH . E 5 HOH A 38 538 31 HOH HOH . E 5 HOH A 39 539 41 HOH HOH . E 5 HOH A 40 540 46 HOH HOH . E 5 HOH A 41 541 61 HOH HOH . E 5 HOH A 42 542 6 HOH HOH . E 5 HOH A 43 543 10 HOH HOH . E 5 HOH A 44 544 65 HOH HOH . E 5 HOH A 45 545 25 HOH HOH . E 5 HOH A 46 546 51 HOH HOH . E 5 HOH A 47 547 28 HOH HOH . E 5 HOH A 48 548 14 HOH HOH . E 5 HOH A 49 549 53 HOH HOH . E 5 HOH A 50 550 58 HOH HOH . E 5 HOH A 51 551 42 HOH HOH . E 5 HOH A 52 552 34 HOH HOH . E 5 HOH A 53 553 18 HOH HOH . E 5 HOH A 54 554 48 HOH HOH . E 5 HOH A 55 555 56 HOH HOH . E 5 HOH A 56 556 44 HOH HOH . E 5 HOH A 57 557 38 HOH HOH . E 5 HOH A 58 558 9 HOH HOH . E 5 HOH A 59 559 55 HOH HOH . E 5 HOH A 60 560 47 HOH HOH . E 5 HOH A 61 561 35 HOH HOH . E 5 HOH A 62 562 7 HOH HOH . E 5 HOH A 63 563 11 HOH HOH . E 5 HOH A 64 564 59 HOH HOH . E 5 HOH A 65 565 50 HOH HOH . E 5 HOH A 66 566 24 HOH HOH . E 5 HOH A 67 567 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 5.035 19.377 8.902 1 24.49 ? N SAM 402 A 1 HETATM 2 C CA SAM . . . C 3 6.052 18.467 9.53 1 24.22 ? CA SAM 402 A 1 HETATM 3 C C SAM . . . C 3 6.295 18.868 10.987 1 25.44 ? C SAM 402 A 1 HETATM 4 O O SAM . . . C 3 6.903 18.03 11.736 1 27.94 ? O SAM 402 A 1 HETATM 5 O OXT SAM . . . C 3 5.879 19.97 11.335 1 22.64 ? OXT SAM 402 A 1 HETATM 6 C CB SAM . . . C 3 7.394 18.554 8.78 1 26.99 ? CB SAM 402 A 1 HETATM 7 C CG SAM . . . C 3 7.624 17.467 7.768 1 25.2 ? CG SAM 402 A 1 HETATM 8 S SD SAM . . . C 3 7.986 15.864 8.558 1 25.15 ? SD SAM 402 A 1 HETATM 9 C CE SAM . . . C 3 9.428 15.39 7.588 1 28.12 ? CE SAM 402 A 1 HETATM 10 C C5' SAM . . . C 3 6.739 14.87 7.686 1 28.46 ? C5' SAM 402 A 1 HETATM 11 C C4' SAM . . . C 3 5.341 14.932 8.279 1 28.09 ? C4' SAM 402 A 1 HETATM 12 O O4' SAM . . . C 3 4.644 16.099 7.769 1 26.08 ? O4' SAM 402 A 1 HETATM 13 C C3' SAM . . . C 3 4.47 13.739 7.911 1 28.97 ? C3' SAM 402 A 1 HETATM 14 O O3' SAM . . . C 3 4.624 12.715 8.885 1 32.74 ? O3' SAM 402 A 1 HETATM 15 C C2' SAM . . . C 3 3.078 14.363 7.912 1 29.73 ? C2' SAM 402 A 1 HETATM 16 O O2' SAM . . . C 3 2.56 14.541 9.215 1 26.7 ? O2' SAM 402 A 1 HETATM 17 C C1' SAM . . . C 3 3.365 15.724 7.297 1 26.86 ? C1' SAM 402 A 1 HETATM 18 N N9 SAM . . . C 3 3.354 15.779 5.843 1 24.42 ? N9 SAM 402 A 1 HETATM 19 C C8 SAM . . . C 3 4.256 16.478 5.074 1 24.79 ? C8 SAM 402 A 1 HETATM 20 N N7 SAM . . . C 3 3.98 16.467 3.795 1 20.88 ? N7 SAM 402 A 1 HETATM 21 C C5 SAM . . . C 3 2.844 15.686 3.702 1 21.32 ? C5 SAM 402 A 1 HETATM 22 C C6 SAM . . . C 3 2.076 15.29 2.589 1 20.88 ? C6 SAM 402 A 1 HETATM 23 N N6 SAM . . . C 3 2.356 15.649 1.331 1 20.02 ? N6 SAM 402 A 1 HETATM 24 N N1 SAM . . . C 3 1.005 14.493 2.826 1 19.24 ? N1 SAM 402 A 1 HETATM 25 C C2 SAM . . . C 3 0.714 14.166 4.101 1 22.04 ? C2 SAM 402 A 1 HETATM 26 N N3 SAM . . . C 3 1.376 14.469 5.228 1 23.44 ? N3 SAM 402 A 1 HETATM 27 C C4 SAM . . . C 3 2.429 15.269 4.961 1 21.54 ? C4 SAM 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #