data_8T6L # _model_server_result.job_id 1LUL1TXroAZXii9BiQwnKA _model_server_result.datetime_utc '2024-11-30 07:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3002}' # _entry.id 8T6L # _exptl.entry_id 8T6L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 4 5 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 3003 NAG 2 n B NAG 2 B 2 NAG A 3004 NAG 2 n B BMA 3 B 3 BMA A 3005 BMA 2 n B MAN 4 B 4 MAN A 3006 MAN 3 n C NAG 1 C 1 NAG A 3007 NAG 3 n C NAG 2 C 2 NAG A 3008 NAG 3 n D NAG 1 D 1 NAG A 3010 NAG 3 n D NAG 2 D 2 NAG A 3011 NAG 4 n E NAG 1 E 1 NAG A 3012 NAG 4 n E NAG 2 E 2 NAG A 3013 NAG 4 n E BMA 3 E 3 BMA A 3014 BMA 4 n E MAN 4 E 4 MAN A 3015 MAN 4 n E MAN 5 E 5 MAN A 3016 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 711 A CYS 909 1_555 A SG CYS 720 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1047 A CYS 1365 1_555 A SG CYS 1068 A CYS 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 1412 A CYS 1730 1_555 A SG CYS 1426 A CYS 1744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 284 A ASN 284 1_555 F C1 NAG . A NAG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 G C1 NAG . A NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 329 A ASN 329 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1049 A ASN 1367 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 1058 A ASN 1376 1_555 H C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 1064 A ASN 1382 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 1072 A ASN 1390 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 E O6 MAN . E MAN 4 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 518 n n C1 O1 NAG sing 519 n n C1 O5 NAG sing 520 n n C1 H1 NAG sing 521 n n C2 C3 NAG sing 522 n n C2 N2 NAG sing 523 n n C2 H2 NAG sing 524 n n C3 C4 NAG sing 525 n n C3 O3 NAG sing 526 n n C3 H3 NAG sing 527 n n C4 C5 NAG sing 528 n n C4 O4 NAG sing 529 n n C4 H4 NAG sing 530 n n C5 C6 NAG sing 531 n n C5 O5 NAG sing 532 n n C5 H5 NAG sing 533 n n C6 O6 NAG sing 534 n n C6 H61 NAG sing 535 n n C6 H62 NAG sing 536 n n C7 C8 NAG sing 537 n n C7 N2 NAG sing 538 n n C7 O7 NAG doub 539 n n C8 H81 NAG sing 540 n n C8 H82 NAG sing 541 n n C8 H83 NAG sing 542 n n N2 HN2 NAG sing 543 n n O1 HO1 NAG sing 544 n n O3 HO3 NAG sing 545 n n O4 HO4 NAG sing 546 n n O6 HO6 NAG sing 547 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8T6L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 3001 3001 NAG NAG . G 5 NAG A 1 3002 3002 NAG NAG . H 5 NAG A 1 3003 3009 NAG NAG . I 6 LBN A 1 3004 3017 LBN LBN . J 6 LBN A 1 3005 3018 LBN LBN . K 6 LBN A 1 3006 3019 LBN LBN . L 6 LBN A 1 3007 3020 LBN LBN . M 6 LBN A 1 3008 3021 LBN LBN . N 6 LBN A 1 3009 3022 LBN LBN . O 6 LBN A 1 3010 3023 LBN LBN . P 6 LBN A 1 3011 3024 LBN LBN . Q 6 LBN A 1 3012 3025 LBN LBN . R 6 LBN A 1 3013 3026 LBN LBN . S 7 Y01 A 1 3014 3027 Y01 Y01 . T 7 Y01 A 1 3015 3028 Y01 Y01 . U 7 Y01 A 1 3016 3029 Y01 Y01 . V 7 Y01 A 1 3017 3030 Y01 Y01 . W 7 Y01 A 1 3018 3031 Y01 Y01 . X 7 Y01 A 1 3019 3032 Y01 Y01 . Y 7 Y01 A 1 3020 3033 Y01 Y01 . Z 7 Y01 A 1 3021 3034 Y01 Y01 . AA 7 Y01 A 1 3022 3035 Y01 Y01 . BA 7 Y01 A 1 3023 3036 Y01 Y01 . CA 7 Y01 A 1 3024 3037 Y01 Y01 . DA 8 9Z9 A 1 3025 3038 9Z9 9Z9 . EA 8 9Z9 A 1 3026 3039 9Z9 9Z9 . FA 9 YIJ A 1 3027 3041 YIJ LIG . GA 9 YIJ A 1 3028 3042 YIJ LIG . HA 10 HOH A 1 3101 3040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 130.773 121.194 164.007 1 61.73 ? C1 NAG 3002 A 1 HETATM 2 C C2 NAG . . . G 5 129.685 120.231 163.53 1 61.64 ? C2 NAG 3002 A 1 HETATM 3 C C3 NAG . . . G 5 129.045 119.484 164.692 1 63.16 ? C3 NAG 3002 A 1 HETATM 4 C C4 NAG . . . G 5 130.121 118.837 165.548 1 62.04 ? C4 NAG 3002 A 1 HETATM 5 C C5 NAG . . . G 5 131.116 119.895 166 1 60.75 ? C5 NAG 3002 A 1 HETATM 6 C C6 NAG . . . G 5 132.21 119.281 166.866 1 63.05 ? C6 NAG 3002 A 1 HETATM 7 C C7 NAG . . . G 5 128.749 121.152 161.484 1 58.86 ? C7 NAG 3002 A 1 HETATM 8 C C8 NAG . . . G 5 127.952 122.303 160.947 1 55.76 ? C8 NAG 3002 A 1 HETATM 9 N N2 NAG . . . G 5 128.662 120.951 162.796 1 60.74 ? N2 NAG 3002 A 1 HETATM 10 O O3 NAG . . . G 5 128.165 118.475 164.188 1 61.42 ? O3 NAG 3002 A 1 HETATM 11 O O4 NAG . . . G 5 129.519 118.221 166.692 1 62.84 ? O4 NAG 3002 A 1 HETATM 12 O O5 NAG . . . G 5 131.708 120.528 164.863 1 57.29 ? O5 NAG 3002 A 1 HETATM 13 O O6 NAG . . . G 5 133.035 120.321 167.403 1 61.34 ? O6 NAG 3002 A 1 HETATM 14 O O7 NAG . . . G 5 129.434 120.444 160.765 1 59.73 ? O7 NAG 3002 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #