data_8T6L # _model_server_result.job_id '_UfRIOVRaD7pvJvWdtU8gA' _model_server_result.datetime_utc '2024-11-30 07:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":3018}' # _entry.id 8T6L # _exptl.entry_id 8T6L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 W N N ? 7 X N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N ? 7 CA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 4 5 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 3003 NAG 2 n B NAG 2 B 2 NAG A 3004 NAG 2 n B BMA 3 B 3 BMA A 3005 BMA 2 n B MAN 4 B 4 MAN A 3006 MAN 3 n C NAG 1 C 1 NAG A 3007 NAG 3 n C NAG 2 C 2 NAG A 3008 NAG 3 n D NAG 1 D 1 NAG A 3010 NAG 3 n D NAG 2 D 2 NAG A 3011 NAG 4 n E NAG 1 E 1 NAG A 3012 NAG 4 n E NAG 2 E 2 NAG A 3013 NAG 4 n E BMA 3 E 3 BMA A 3014 BMA 4 n E MAN 4 E 4 MAN A 3015 MAN 4 n E MAN 5 E 5 MAN A 3016 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 711 A CYS 909 1_555 A SG CYS 720 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1047 A CYS 1365 1_555 A SG CYS 1068 A CYS 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 1412 A CYS 1730 1_555 A SG CYS 1426 A CYS 1744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 284 A ASN 284 1_555 F C1 NAG . A NAG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 G C1 NAG . A NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 329 A ASN 329 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1049 A ASN 1367 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 1058 A ASN 1376 1_555 H C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 1064 A ASN 1382 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 1072 A ASN 1390 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 E O6 MAN . E MAN 4 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 687 n n CBA CAB Y01 sing 688 n n CBA CAN Y01 sing 689 n n CAN CAJ Y01 sing 690 n n CAJ CAO Y01 sing 691 n n CAO CBB Y01 sing 692 n n CBB CAC Y01 sing 693 n n CBB CBE Y01 sing 694 n n CBE CAP Y01 sing 695 n n CBE CBI Y01 sing 696 n n CAP CAQ Y01 sing 697 n n CAQ CBG Y01 sing 698 n n CBG CBI Y01 sing 699 n n CBG CBD Y01 sing 700 n n CBI CAE Y01 sing 701 n n CBI CAU Y01 sing 702 n n CAU CAS Y01 sing 703 n n CAS CBF Y01 sing 704 n n CBF CBD Y01 sing 705 n n CBF CBH Y01 sing 706 n n CBD CAK Y01 sing 707 n n CAK CAI Y01 sing 708 n n CAI CAZ Y01 doub 709 n n CAZ CAV Y01 sing 710 n n CAZ CBH Y01 sing 711 n n CAV CBC Y01 sing 712 n n CBH CAD Y01 sing 713 n n CBH CAT Y01 sing 714 n n CAT CAR Y01 sing 715 n n CAR CBC Y01 sing 716 n n CBC OAW Y01 sing 717 n n OAW CAY Y01 sing 718 n n CAY OAG Y01 doub 719 n n CAY CAM Y01 sing 720 n n CAM CAL Y01 sing 721 n n CAL CAX Y01 sing 722 n n CAX OAH Y01 sing 723 n n CAX OAF Y01 doub 724 n n CAA HAA1 Y01 sing 725 n n CAA HAA2 Y01 sing 726 n n CAA HAA3 Y01 sing 727 n n CBA HBA Y01 sing 728 n n CAB HAB1 Y01 sing 729 n n CAB HAB2 Y01 sing 730 n n CAB HAB3 Y01 sing 731 n n CAN HAN1 Y01 sing 732 n n CAN HAN2 Y01 sing 733 n n CAJ HAJ1 Y01 sing 734 n n CAJ HAJ2 Y01 sing 735 n n CAO HAO1 Y01 sing 736 n n CAO HAO2 Y01 sing 737 n n CBB HBB Y01 sing 738 n n CAC HAC1 Y01 sing 739 n n CAC HAC2 Y01 sing 740 n n CAC HAC3 Y01 sing 741 n n CBE HBE Y01 sing 742 n n CAP HAP1 Y01 sing 743 n n CAP HAP2 Y01 sing 744 n n CAQ HAQ1 Y01 sing 745 n n CAQ HAQ2 Y01 sing 746 n n CBG HBG Y01 sing 747 n n CBD HBD Y01 sing 748 n n CAE HAE1 Y01 sing 749 n n CAE HAE2 Y01 sing 750 n n CAE HAE3 Y01 sing 751 n n CAU HAU1 Y01 sing 752 n n CAU HAU2 Y01 sing 753 n n CAS HAS1 Y01 sing 754 n n CAS HAS2 Y01 sing 755 n n CBF HBF Y01 sing 756 n n CAK HAK1 Y01 sing 757 n n CAK HAK2 Y01 sing 758 n n CAI HAI Y01 sing 759 n n CAV HAV1 Y01 sing 760 n n CAV HAV2 Y01 sing 761 n n CBC HBC Y01 sing 762 n n CAD HAD1 Y01 sing 763 n n CAD HAD2 Y01 sing 764 n n CAD HAD3 Y01 sing 765 n n CAT HAT1 Y01 sing 766 n n CAT HAT2 Y01 sing 767 n n CAR HAR1 Y01 sing 768 n n CAR HAR2 Y01 sing 769 n n CAM HAM1 Y01 sing 770 n n CAM HAM2 Y01 sing 771 n n CAL HAL1 Y01 sing 772 n n CAL HAL2 Y01 sing 773 n n OAH HAH Y01 sing 774 n n # _atom_sites.entry_id 8T6L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 3001 3001 NAG NAG . G 5 NAG A 1 3002 3002 NAG NAG . H 5 NAG A 1 3003 3009 NAG NAG . I 6 LBN A 1 3004 3017 LBN LBN . J 6 LBN A 1 3005 3018 LBN LBN . K 6 LBN A 1 3006 3019 LBN LBN . L 6 LBN A 1 3007 3020 LBN LBN . M 6 LBN A 1 3008 3021 LBN LBN . N 6 LBN A 1 3009 3022 LBN LBN . O 6 LBN A 1 3010 3023 LBN LBN . P 6 LBN A 1 3011 3024 LBN LBN . Q 6 LBN A 1 3012 3025 LBN LBN . R 6 LBN A 1 3013 3026 LBN LBN . S 7 Y01 A 1 3014 3027 Y01 Y01 . T 7 Y01 A 1 3015 3028 Y01 Y01 . U 7 Y01 A 1 3016 3029 Y01 Y01 . V 7 Y01 A 1 3017 3030 Y01 Y01 . W 7 Y01 A 1 3018 3031 Y01 Y01 . X 7 Y01 A 1 3019 3032 Y01 Y01 . Y 7 Y01 A 1 3020 3033 Y01 Y01 . Z 7 Y01 A 1 3021 3034 Y01 Y01 . AA 7 Y01 A 1 3022 3035 Y01 Y01 . BA 7 Y01 A 1 3023 3036 Y01 Y01 . CA 7 Y01 A 1 3024 3037 Y01 Y01 . DA 8 9Z9 A 1 3025 3038 9Z9 9Z9 . EA 8 9Z9 A 1 3026 3039 9Z9 9Z9 . FA 9 YIJ A 1 3027 3041 YIJ LIG . GA 9 YIJ A 1 3028 3042 YIJ LIG . HA 10 HOH A 1 3101 3040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ Y01 . . . W 7 155.41 138.088 128.435 1 69.26 ? CAJ Y01 3018 A 1 HETATM 2 C CAO Y01 . . . W 7 156.392 139.051 129.054 1 69.58 ? CAO Y01 3018 A 1 HETATM 3 C CBB Y01 . . . W 7 156.571 138.92 130.574 1 64.72 ? CBB Y01 3018 A 1 HETATM 4 C CAC Y01 . . . W 7 157.137 137.546 130.921 1 61.28 ? CAC Y01 3018 A 1 HETATM 5 C CBE Y01 . . . W 7 157.426 140.084 131.108 1 66.75 ? CBE Y01 3018 A 1 HETATM 6 C CAP Y01 . . . W 7 156.996 141.449 130.503 1 66.97 ? CAP Y01 3018 A 1 HETATM 7 C CAQ Y01 . . . W 7 157.263 142.52 131.579 1 66.63 ? CAQ Y01 3018 A 1 HETATM 8 C CBG Y01 . . . W 7 158.119 141.784 132.604 1 68.76 ? CBG Y01 3018 A 1 HETATM 9 C CBI Y01 . . . W 7 157.498 140.373 132.639 1 66.77 ? CBI Y01 3018 A 1 HETATM 10 C CAE Y01 . . . W 7 156.083 140.38 133.239 1 64.67 ? CAE Y01 3018 A 1 HETATM 11 C CAU Y01 . . . W 7 158.442 139.498 133.469 1 64.08 ? CAU Y01 3018 A 1 HETATM 12 C CAS Y01 . . . W 7 158.647 140.073 134.875 1 62.88 ? CAS Y01 3018 A 1 HETATM 13 C CBF Y01 . . . W 7 159.193 141.509 134.858 1 63.44 ? CBF Y01 3018 A 1 HETATM 14 C CBD Y01 . . . W 7 158.338 142.429 133.967 1 69.33 ? CBD Y01 3018 A 1 HETATM 15 C CAK Y01 . . . W 7 159.023 143.782 133.808 1 70.4 ? CAK Y01 3018 A 1 HETATM 16 C CAI Y01 . . . W 7 159.616 144.283 135.086 1 69.23 ? CAI Y01 3018 A 1 HETATM 17 C CAZ Y01 . . . W 7 159.731 143.576 136.2 1 68.91 ? CAZ Y01 3018 A 1 HETATM 18 C CAV Y01 . . . W 7 160.255 144.216 137.468 1 67.25 ? CAV Y01 3018 A 1 HETATM 19 C CBH Y01 . . . W 7 159.391 142.091 136.287 1 62.71 ? CBH Y01 3018 A 1 HETATM 20 C CAD Y01 . . . W 7 158.121 141.946 137.145 1 65.33 ? CAD Y01 3018 A 1 HETATM 21 C CAT Y01 . . . W 7 160.57 141.362 136.975 1 58.55 ? CAT Y01 3018 A 1 HETATM 22 C CAR Y01 . . . W 7 161.048 142.036 138.264 1 61.96 ? CAR Y01 3018 A 1 HETATM 23 C CBC Y01 . . . W 7 161.449 143.463 138 1 68.99 ? CBC Y01 3018 A 1 HETATM 24 O OAW Y01 . . . W 7 161.874 144.142 139.221 1 68.56 ? OAW Y01 3018 A 1 HETATM 25 C CAY Y01 . . . W 7 163.062 143.852 139.749 1 66.33 ? CAY Y01 3018 A 1 HETATM 26 O OAG Y01 . . . W 7 163.584 142.777 139.685 1 67.14 ? OAG Y01 3018 A 1 HETATM 27 C CAM Y01 . . . W 7 163.712 145.069 140.352 1 64.45 ? CAM Y01 3018 A 1 HETATM 28 C CAL Y01 . . . W 7 162.911 145.892 141.343 1 64.95 ? CAL Y01 3018 A 1 HETATM 29 C CAX Y01 . . . W 7 162.61 145.204 142.663 1 69.77 ? CAX Y01 3018 A 1 HETATM 30 O OAH Y01 . . . W 7 163.043 145.726 143.71 1 70.61 ? OAH Y01 3018 A 1 HETATM 31 O OAF Y01 . . . W 7 161.943 144.151 142.643 1 69.89 ? OAF Y01 3018 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #