data_8T6U
#
_model_server_result.job_id            olLGjPLTQKiNaCa-VOWYLA 
_model_server_result.datetime_utc      '2024-11-08 20:38:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t6u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2203}' 
#
_entry.id    8T6U 
#
_exptl.entry_id    8T6U 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              504.626 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T6U 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T6U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 N N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 D 1 NAG A 2401 NAG 
2 n C NAG 2 D 2 NAG A 2402 NAG 
2 n D NAG 1 L 1 NAG B 2401 NAG 
2 n D NAG 2 L 2 NAG B 2402 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 274 A ASN 642 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 274 B ASN 642 1_555 D C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? 
covale ? covale4 D O4 NAG . L NAG 1 1_555 D C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? 
#
_chem_comp.formula           'C24 H40 N8 O4' 
_chem_comp.formula_weight    504.626 
_chem_comp.id                H9F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 H9F sing 206 n n 
C17 C16 H9F sing 207 n n 
C18 C19 H9F sing 208 n n 
C16 C15 H9F sing 209 n n 
C22 C23 H9F sing 210 n n 
C22 C21 H9F sing 211 n n 
C19 N7 H9F sing 212 n n 
O2 C10 H9F sing 213 n n 
C23 C24 H9F sing 214 n n 
C21 C20 H9F sing 215 n n 
C9 C10 H9F sing 216 n n 
C9 N5 H9F sing 217 n n 
C15 N7 H9F sing 218 n n 
N7 C2 H9F sing 219 n n 
C2 N1 H9F doub 220 n y 
C2 C1 H9F sing 221 n y 
N1 C3 H9F sing 222 n y 
C1 N4 H9F sing 223 n y 
C1 C4 H9F doub 224 n y 
N4 C6 H9F doub 225 n y 
C13 N6 H9F sing 226 n n 
C13 C14 H9F sing 227 n n 
C6 N6 H9F sing 228 n n 
C6 N3 H9F sing 229 n y 
C3 N2 H9F doub 230 n y 
C3 N5 H9F sing 231 n n 
C4 N2 H9F sing 232 n y 
C4 C5 H9F sing 233 n y 
C24 N8 H9F sing 234 n n 
N5 C7 H9F sing 235 n n 
N6 C11 H9F sing 236 n n 
C5 N3 H9F doub 237 n y 
C5 N8 H9F sing 238 n n 
N8 C20 H9F sing 239 n n 
C11 C12 H9F sing 240 n n 
C7 C8 H9F sing 241 n n 
C14 O4 H9F sing 242 n n 
C12 O3 H9F sing 243 n n 
C8 O1 H9F sing 244 n n 
C7 H1 H9F sing 245 n n 
C7 H2 H9F sing 246 n n 
C8 H3 H9F sing 247 n n 
C8 H4 H9F sing 248 n n 
C10 H5 H9F sing 249 n n 
C10 H6 H9F sing 250 n n 
C13 H7 H9F sing 251 n n 
C13 H8 H9F sing 252 n n 
C15 H9 H9F sing 253 n n 
C15 H10 H9F sing 254 n n 
C17 H11 H9F sing 255 n n 
C17 H12 H9F sing 256 n n 
C20 H13 H9F sing 257 n n 
C20 H14 H9F sing 258 n n 
C21 H15 H9F sing 259 n n 
C21 H16 H9F sing 260 n n 
C22 H17 H9F sing 261 n n 
C22 H18 H9F sing 262 n n 
C24 H19 H9F sing 263 n n 
C24 H20 H9F sing 264 n n 
O1 H21 H9F sing 265 n n 
C9 H22 H9F sing 266 n n 
C9 H23 H9F sing 267 n n 
O2 H24 H9F sing 268 n n 
C11 H25 H9F sing 269 n n 
C11 H26 H9F sing 270 n n 
C12 H27 H9F sing 271 n n 
C12 H28 H9F sing 272 n n 
O3 H29 H9F sing 273 n n 
C14 H30 H9F sing 274 n n 
C14 H31 H9F sing 275 n n 
O4 H32 H9F sing 276 n n 
C16 H33 H9F sing 277 n n 
C16 H34 H9F sing 278 n n 
C18 H35 H9F sing 279 n n 
C18 H36 H9F sing 280 n n 
C19 H37 H9F sing 281 n n 
C19 H38 H9F sing 282 n n 
C23 H39 H9F sing 283 n n 
C23 H40 H9F sing 284 n n 
#
_atom_sites.entry_id                     8T6U 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CLR A 1 2201 2201 CLR CLR . 
F 3 CLR A 1 2202 2202 CLR CLR . 
G 4 PC1 A 1 2203 2301 PC1 PC1 . 
H 5 H9F A 1 2204 2101 H9F DP1 . 
I 3 CLR A 1 2205 2203 CLR CLR . 
J 3 CLR A 1 2206 2204 CLR CLR . 
K 4 PC1 A 1 2207 2301 PC1 PC1 . 
L 3 CLR B 1 2201 2201 CLR CLR . 
M 3 CLR B 1 2202 2202 CLR CLR . 
N 5 H9F B 1 2203 2101 H9F DP1 . 
O 3 CLR B 1 2204 2203 CLR CLR . 
P 3 CLR B 1 2205 2204 CLR CLR . 
Q 6 HOH A 1 2301 18 HOH HOH . 
Q 6 HOH A 2 2302 6 HOH HOH . 
Q 6 HOH A 3 2303 13 HOH HOH . 
Q 6 HOH A 4 2304 24 HOH HOH . 
Q 6 HOH A 5 2305 20 HOH HOH . 
Q 6 HOH A 6 2306 17 HOH HOH . 
Q 6 HOH A 7 2307 23 HOH HOH . 
Q 6 HOH A 8 2308 26 HOH HOH . 
Q 6 HOH A 9 2309 8 HOH HOH . 
Q 6 HOH A 10 2310 9 HOH HOH . 
Q 6 HOH A 11 2311 3 HOH HOH . 
Q 6 HOH A 12 2312 30 HOH HOH . 
Q 6 HOH A 13 2313 34 HOH HOH . 
Q 6 HOH A 14 2314 1 HOH HOH . 
Q 6 HOH A 15 2315 10 HOH HOH . 
Q 6 HOH A 16 2316 15 HOH HOH . 
Q 6 HOH A 17 2317 28 HOH HOH . 
Q 6 HOH A 18 2318 36 HOH HOH . 
Q 6 HOH A 19 2319 32 HOH HOH . 
R 6 HOH B 1 2301 19 HOH HOH . 
R 6 HOH B 2 2302 5 HOH HOH . 
R 6 HOH B 3 2303 22 HOH HOH . 
R 6 HOH B 4 2304 12 HOH HOH . 
R 6 HOH B 5 2305 21 HOH HOH . 
R 6 HOH B 6 2306 16 HOH HOH . 
R 6 HOH B 7 2307 25 HOH HOH . 
R 6 HOH B 8 2308 7 HOH HOH . 
R 6 HOH B 9 2309 4 HOH HOH . 
R 6 HOH B 10 2310 2 HOH HOH . 
R 6 HOH B 11 2311 35 HOH HOH . 
R 6 HOH B 12 2312 31 HOH HOH . 
R 6 HOH B 13 2313 11 HOH HOH . 
R 6 HOH B 14 2314 14 HOH HOH . 
R 6 HOH B 15 2315 29 HOH HOH . 
R 6 HOH B 16 2316 37 HOH HOH . 
R 6 HOH B 17 2317 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H9F . . . N 5 186.334 203.791 205.864 1 179.26 ? N1 H9F 2203 B 1 
HETATM 2 N N3 H9F . . . N 5 188.637 206.418 202.186 1 152.37 ? N3 H9F 2203 B 1 
HETATM 3 C C4 H9F . . . N 5 187.046 205.063 203.451 1 134.94 ? C4 H9F 2203 B 1 
HETATM 4 C C5 H9F . . . N 5 187.462 205.783 202.196 1 150.17 ? C5 H9F 2203 B 1 
HETATM 5 C C6 H9F . . . N 5 189.46 206.432 203.35 1 159.41 ? C6 H9F 2203 B 1 
HETATM 6 C C7 H9F . . . N 5 183.523 202.935 206.076 1 191.92 ? C7 H9F 2203 B 1 
HETATM 7 C C8 H9F . . . N 5 183.235 204.3 206.729 1 167.41 ? C8 H9F 2203 B 1 
HETATM 8 C C10 H9F . . . N 5 183.885 200.916 203.612 1 198.41 ? C10 H9F 2203 B 1 
HETATM 9 C C13 H9F . . . N 5 191.846 206.8 204.205 1 199.25 ? C13 H9F 2203 B 1 
HETATM 10 C C15 H9F . . . N 5 188.772 205.774 207.628 1 219.38 ? C15 H9F 2203 B 1 
HETATM 11 C C17 H9F . . . N 5 189.615 204.749 209.783 1 261.57 ? C17 H9F 2203 B 1 
HETATM 12 C C20 H9F . . . N 5 185.035 205.758 201.019 1 196.32 ? C20 H9F 2203 B 1 
HETATM 13 C C21 H9F . . . N 5 184.462 206.965 200.215 1 213.96 ? C21 H9F 2203 B 1 
HETATM 14 C C22 H9F . . . N 5 185.008 207.078 198.801 1 233.05 ? C22 H9F 2203 B 1 
HETATM 15 C C24 H9F . . . N 5 187.183 205.899 199.607 1 193.19 ? C24 H9F 2203 B 1 
HETATM 16 C C1 H9F . . . N 5 187.947 205.115 204.576 1 127.23 ? C1 H9F 2203 B 1 
HETATM 17 C C2 H9F . . . N 5 187.52 204.425 205.83 1 164.85 ? C2 H9F 2203 B 1 
HETATM 18 C C3 H9F . . . N 5 185.524 203.761 204.675 1 172.95 ? C3 H9F 2203 B 1 
HETATM 19 N N2 H9F . . . N 5 185.833 204.359 203.507 1 154.12 ? N2 H9F 2203 B 1 
HETATM 20 N N4 H9F . . . N 5 189.142 205.824 204.494 1 134.31 ? N4 H9F 2203 B 1 
HETATM 21 N N5 H9F . . . N 5 184.264 203.064 204.783 1 185.97 ? N5 H9F 2203 B 1 
HETATM 22 O O1 H9F . . . N 5 182.024 204.753 206.195 1 171.08 ? O1 H9F 2203 B 1 
HETATM 23 C C9 H9F . . . N 5 183.663 202.462 203.583 1 187.28 ? C9 H9F 2203 B 1 
HETATM 24 O O2 H9F . . . N 5 182.753 200.319 203.053 1 189.56 ? O2 H9F 2203 B 1 
HETATM 25 N N6 H9F . . . N 5 190.749 207.14 203.319 1 169.74 ? N6 H9F 2203 B 1 
HETATM 26 C C11 H9F . . . N 5 191.039 208.257 202.386 1 159.32 ? C11 H9F 2203 B 1 
HETATM 27 C C12 H9F . . . N 5 191.769 207.816 201.118 1 175.24 ? C12 H9F 2203 B 1 
HETATM 28 O O3 H9F . . . N 5 191.297 208.522 200.004 1 159.24 ? O3 H9F 2203 B 1 
HETATM 29 C C14 H9F . . . N 5 192.049 207.701 205.428 1 225.41 ? C14 H9F 2203 B 1 
HETATM 30 O O4 H9F . . . N 5 193.228 208.399 205.176 1 243.82 ? O4 H9F 2203 B 1 
HETATM 31 N N7 H9F . . . N 5 188.348 204.416 207.069 1 202.86 ? N7 H9F 2203 B 1 
HETATM 32 N N8 H9F . . . N 5 186.579 205.795 200.974 1 175.87 ? N8 H9F 2203 B 1 
HETATM 33 C C16 H9F . . . N 5 189.989 205.619 208.575 1 238.8 ? C16 H9F 2203 B 1 
HETATM 34 C C18 H9F . . . N 5 188.945 203.423 209.317 1 260.39 ? C18 H9F 2203 B 1 
HETATM 35 C C19 H9F . . . N 5 187.818 203.624 208.245 1 231.59 ? C19 H9F 2203 B 1 
HETATM 36 C C23 H9F . . . N 5 186.543 207.093 198.817 1 212.18 ? C23 H9F 2203 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#