data_8T6U # _model_server_result.job_id APD-aSPaeZLWOt4AEdlffw _model_server_result.datetime_utc '2024-11-22 21:03:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2204}' # _entry.id 8T6U # _exptl.entry_id 8T6U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 504.626 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 D 1 NAG A 2401 NAG 2 n C NAG 2 D 2 NAG A 2402 NAG 2 n D NAG 1 L 1 NAG B 2401 NAG 2 n D NAG 2 L 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 274 A ASN 642 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 274 B ASN 642 1_555 D C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale4 D O4 NAG . L NAG 1 1_555 D C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? # _chem_comp.formula 'C24 H40 N8 O4' _chem_comp.formula_weight 504.626 _chem_comp.id H9F _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 H9F sing 206 n n C17 C16 H9F sing 207 n n C18 C19 H9F sing 208 n n C16 C15 H9F sing 209 n n C22 C23 H9F sing 210 n n C22 C21 H9F sing 211 n n C19 N7 H9F sing 212 n n O2 C10 H9F sing 213 n n C23 C24 H9F sing 214 n n C21 C20 H9F sing 215 n n C9 C10 H9F sing 216 n n C9 N5 H9F sing 217 n n C15 N7 H9F sing 218 n n N7 C2 H9F sing 219 n n C2 N1 H9F doub 220 n y C2 C1 H9F sing 221 n y N1 C3 H9F sing 222 n y C1 N4 H9F sing 223 n y C1 C4 H9F doub 224 n y N4 C6 H9F doub 225 n y C13 N6 H9F sing 226 n n C13 C14 H9F sing 227 n n C6 N6 H9F sing 228 n n C6 N3 H9F sing 229 n y C3 N2 H9F doub 230 n y C3 N5 H9F sing 231 n n C4 N2 H9F sing 232 n y C4 C5 H9F sing 233 n y C24 N8 H9F sing 234 n n N5 C7 H9F sing 235 n n N6 C11 H9F sing 236 n n C5 N3 H9F doub 237 n y C5 N8 H9F sing 238 n n N8 C20 H9F sing 239 n n C11 C12 H9F sing 240 n n C7 C8 H9F sing 241 n n C14 O4 H9F sing 242 n n C12 O3 H9F sing 243 n n C8 O1 H9F sing 244 n n C7 H1 H9F sing 245 n n C7 H2 H9F sing 246 n n C8 H3 H9F sing 247 n n C8 H4 H9F sing 248 n n C10 H5 H9F sing 249 n n C10 H6 H9F sing 250 n n C13 H7 H9F sing 251 n n C13 H8 H9F sing 252 n n C15 H9 H9F sing 253 n n C15 H10 H9F sing 254 n n C17 H11 H9F sing 255 n n C17 H12 H9F sing 256 n n C20 H13 H9F sing 257 n n C20 H14 H9F sing 258 n n C21 H15 H9F sing 259 n n C21 H16 H9F sing 260 n n C22 H17 H9F sing 261 n n C22 H18 H9F sing 262 n n C24 H19 H9F sing 263 n n C24 H20 H9F sing 264 n n O1 H21 H9F sing 265 n n C9 H22 H9F sing 266 n n C9 H23 H9F sing 267 n n O2 H24 H9F sing 268 n n C11 H25 H9F sing 269 n n C11 H26 H9F sing 270 n n C12 H27 H9F sing 271 n n C12 H28 H9F sing 272 n n O3 H29 H9F sing 273 n n C14 H30 H9F sing 274 n n C14 H31 H9F sing 275 n n O4 H32 H9F sing 276 n n C16 H33 H9F sing 277 n n C16 H34 H9F sing 278 n n C18 H35 H9F sing 279 n n C18 H36 H9F sing 280 n n C19 H37 H9F sing 281 n n C19 H38 H9F sing 282 n n C23 H39 H9F sing 283 n n C23 H40 H9F sing 284 n n # _atom_sites.entry_id 8T6U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR A 1 2201 2201 CLR CLR . F 3 CLR A 1 2202 2202 CLR CLR . G 4 PC1 A 1 2203 2301 PC1 PC1 . H 5 H9F A 1 2204 2101 H9F DP1 . I 3 CLR A 1 2205 2203 CLR CLR . J 3 CLR A 1 2206 2204 CLR CLR . K 4 PC1 A 1 2207 2301 PC1 PC1 . L 3 CLR B 1 2201 2201 CLR CLR . M 3 CLR B 1 2202 2202 CLR CLR . N 5 H9F B 1 2203 2101 H9F DP1 . O 3 CLR B 1 2204 2203 CLR CLR . P 3 CLR B 1 2205 2204 CLR CLR . Q 6 HOH A 1 2301 18 HOH HOH . Q 6 HOH A 2 2302 6 HOH HOH . Q 6 HOH A 3 2303 13 HOH HOH . Q 6 HOH A 4 2304 24 HOH HOH . Q 6 HOH A 5 2305 20 HOH HOH . Q 6 HOH A 6 2306 17 HOH HOH . Q 6 HOH A 7 2307 23 HOH HOH . Q 6 HOH A 8 2308 26 HOH HOH . Q 6 HOH A 9 2309 8 HOH HOH . Q 6 HOH A 10 2310 9 HOH HOH . Q 6 HOH A 11 2311 3 HOH HOH . Q 6 HOH A 12 2312 30 HOH HOH . Q 6 HOH A 13 2313 34 HOH HOH . Q 6 HOH A 14 2314 1 HOH HOH . Q 6 HOH A 15 2315 10 HOH HOH . Q 6 HOH A 16 2316 15 HOH HOH . Q 6 HOH A 17 2317 28 HOH HOH . Q 6 HOH A 18 2318 36 HOH HOH . Q 6 HOH A 19 2319 32 HOH HOH . R 6 HOH B 1 2301 19 HOH HOH . R 6 HOH B 2 2302 5 HOH HOH . R 6 HOH B 3 2303 22 HOH HOH . R 6 HOH B 4 2304 12 HOH HOH . R 6 HOH B 5 2305 21 HOH HOH . R 6 HOH B 6 2306 16 HOH HOH . R 6 HOH B 7 2307 25 HOH HOH . R 6 HOH B 8 2308 7 HOH HOH . R 6 HOH B 9 2309 4 HOH HOH . R 6 HOH B 10 2310 2 HOH HOH . R 6 HOH B 11 2311 35 HOH HOH . R 6 HOH B 12 2312 31 HOH HOH . R 6 HOH B 13 2313 11 HOH HOH . R 6 HOH B 14 2314 14 HOH HOH . R 6 HOH B 15 2315 29 HOH HOH . R 6 HOH B 16 2316 37 HOH HOH . R 6 HOH B 17 2317 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H9F . . . H 5 173.1 155.051 202.017 1 141.01 ? N1 H9F 2204 A 1 HETATM 2 N N3 H9F . . . H 5 175.354 157.633 205.789 1 173.44 ? N3 H9F 2204 A 1 HETATM 3 C C4 H9F . . . H 5 173.767 156.265 204.481 1 122.95 ? C4 H9F 2204 A 1 HETATM 4 C C5 H9F . . . H 5 174.187 156.928 205.759 1 157.61 ? C5 H9F 2204 A 1 HETATM 5 C C6 H9F . . . H 5 176.133 157.741 204.58 1 173.43 ? C6 H9F 2204 A 1 HETATM 6 C C7 H9F . . . H 5 170.715 153.172 204.099 1 162.86 ? C7 H9F 2204 A 1 HETATM 7 C C8 H9F . . . H 5 169.37 153.49 204.809 1 173.07 ? C8 H9F 2204 A 1 HETATM 8 C C10 H9F . . . H 5 170.24 153.249 200.913 1 155.31 ? C10 H9F 2204 A 1 HETATM 9 C C13 H9F . . . H 5 177.481 159.915 204.719 1 215.07 ? C13 H9F 2204 A 1 HETATM 10 C C15 H9F . . . H 5 176.542 155.413 200.943 1 186.44 ? C15 H9F 2204 A 1 HETATM 11 C C17 H9F . . . H 5 176.33 153.883 198.79 1 217.42 ? C17 H9F 2204 A 1 HETATM 12 C C20 H9F . . . H 5 171.838 157.04 206.995 1 210.85 ? C20 H9F 2204 A 1 HETATM 13 C C21 H9F . . . H 5 171.021 155.82 207.51 1 222.61 ? C21 H9F 2204 A 1 HETATM 14 C C22 H9F . . . H 5 171.888 154.819 208.238 1 238.32 ? C22 H9F 2204 A 1 HETATM 15 C C24 H9F . . . H 5 173.916 156.44 208.308 1 204.26 ? C24 H9F 2204 A 1 HETATM 16 C C1 H9F . . . H 5 174.642 156.426 203.344 1 137.2 ? C1 H9F 2204 A 1 HETATM 17 C C2 H9F . . . H 5 174.242 155.762 202.064 1 146.03 ? C2 H9F 2204 A 1 HETATM 18 C C3 H9F . . . H 5 172.308 154.952 203.203 1 146.55 ? C3 H9F 2204 A 1 HETATM 19 N N2 H9F . . . H 5 172.614 155.508 204.414 1 119.47 ? N2 H9F 2204 A 1 HETATM 20 N N4 H9F . . . H 5 175.817 157.192 203.398 1 155.07 ? N4 H9F 2204 A 1 HETATM 21 N N5 H9F . . . H 5 171.103 154.18 203.103 1 155.9 ? N5 H9F 2204 A 1 HETATM 22 O O1 H9F . . . H 5 168.447 152.68 204.141 1 157.57 ? O1 H9F 2204 A 1 HETATM 23 C C9 H9F . . . H 5 170.241 154.371 201.986 1 156.16 ? C9 H9F 2204 A 1 HETATM 24 O O2 H9F . . . H 5 171.412 153.421 200.224 1 137.6 ? O2 H9F 2204 A 1 HETATM 25 N N6 H9F . . . H 5 177.366 158.468 204.62 1 189.09 ? N6 H9F 2204 A 1 HETATM 26 C C11 H9F . . . H 5 178.672 157.727 204.556 1 181.96 ? C11 H9F 2204 A 1 HETATM 27 C C12 H9F . . . H 5 179.238 157.307 205.98 1 169.66 ? C12 H9F 2204 A 1 HETATM 28 O O3 H9F . . . H 5 178.138 156.936 206.773 1 133.46 ? O3 H9F 2204 A 1 HETATM 29 C C14 H9F . . . H 5 177.336 160.614 203.38 1 216.69 ? C14 H9F 2204 A 1 HETATM 30 O O4 H9F . . . H 5 177.401 161.973 203.658 1 220.46 ? O4 H9F 2204 A 1 HETATM 31 N N7 H9F . . . H 5 175.057 155.865 200.831 1 169.38 ? N7 H9F 2204 A 1 HETATM 32 N N8 H9F . . . H 5 173.351 156.786 206.981 1 190.1 ? N8 H9F 2204 A 1 HETATM 33 C C16 H9F . . . H 5 177.174 154.927 199.593 1 216.63 ? C16 H9F 2204 A 1 HETATM 34 C C18 H9F . . . H 5 174.883 153.934 199.227 1 184.59 ? C18 H9F 2204 A 1 HETATM 35 C C19 H9F . . . H 5 174.406 155.355 199.558 1 175.03 ? C19 H9F 2204 A 1 HETATM 36 C C23 H9F . . . H 5 172.912 155.56 209.123 1 233.92 ? C23 H9F 2204 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #