data_8T6V # _model_server_result.job_id ZYgqYYx9JklZIycXMFKzSg _model_server_result.datetime_utc '2025-03-01 03:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2101}' # _entry.id 8T6V # _exptl.entry_id 8T6V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.52 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-Diisothiocyano-2,2'-stilbenedisulfonic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 171 A LYS 539 1_555 E CBA 4DS . A 4DS 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 A ND2 ASN 274 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B NZ LYS 171 B LYS 539 1_555 K CBA 4DS . B 4DS 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale4 B ND2 ASN 274 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C16 H10 N2 O6 S4' _chem_comp.formula_weight 454.52 _chem_comp.id 4DS _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-Diisothiocyano-2,2'-stilbenedisulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA HOA 4DS sing 1 n n OAA SAB 4DS sing 2 n n CAE SAB 4DS sing 3 n n SAB OAD 4DS doub 4 n n SAB OAC 4DS doub 5 n n CAJ CAE 4DS doub 6 n y CAE CAF 4DS sing 7 n y CAG CAF 4DS doub 8 n y CAF HAF 4DS sing 9 n n CAH CAG 4DS sing 10 n y CAG NAZ 4DS sing 11 n n HAH CAH 4DS sing 12 n n CAI CAH 4DS doub 13 n y HAI CAI 4DS sing 14 n n CAI CAJ 4DS sing 15 n y CAK CAJ 4DS sing 16 n n CAL CAK 4DS doub 17 e n CAK HAK 4DS sing 18 n n HAL CAL 4DS sing 19 n n CAM CAL 4DS sing 20 n n CAN CAM 4DS doub 21 n y CAM CAR 4DS sing 22 n y SAV CAN 4DS sing 23 n n CAO CAN 4DS sing 24 n y HAO CAO 4DS sing 25 n n CAO CAP 4DS doub 26 n y NAS CAP 4DS sing 27 n n CAP CAQ 4DS sing 28 n y CAQ CAR 4DS doub 29 n y CAQ HAQ 4DS sing 30 n n CAR HAR 4DS sing 31 n n CAT NAS 4DS doub 32 n n SAU CAT 4DS doub 33 n n OAX SAV 4DS doub 34 n n OAW SAV 4DS sing 35 n n SAV OAY 4DS doub 36 n n HOW OAW 4DS sing 37 n n CBA NAZ 4DS doub 38 n n SBB CBA 4DS doub 39 n n # _atom_sites.entry_id 8T6V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 4DS A 1 2101 2101 4DS DID . F 4 CLR A 1 2102 2201 CLR CLR . G 5 Y01 A 1 2103 2202 Y01 Y01 . H 4 CLR A 1 2104 2203 CLR CLR . I 4 CLR A 1 2105 2204 CLR CLR . J 6 PC1 B 1 2301 2301 PC1 PC1 . K 3 4DS B 1 2302 2101 4DS DID . L 4 CLR B 1 2303 2201 CLR CLR . M 5 Y01 B 1 2304 2202 Y01 Y01 . N 4 CLR B 1 2305 2203 CLR CLR . O 4 CLR B 1 2306 2204 CLR CLR . P 6 PC1 B 1 2307 2301 PC1 PC1 . Q 7 HOH A 1 2201 21 HOH HOH . Q 7 HOH A 2 2202 46 HOH HOH . Q 7 HOH A 3 2203 1 HOH HOH . Q 7 HOH A 4 2204 3 HOH HOH . Q 7 HOH A 5 2205 49 HOH HOH . Q 7 HOH A 6 2206 58 HOH HOH . Q 7 HOH A 7 2207 33 HOH HOH . Q 7 HOH A 8 2208 18 HOH HOH . Q 7 HOH A 9 2209 19 HOH HOH . Q 7 HOH A 10 2210 17 HOH HOH . Q 7 HOH A 11 2211 2 HOH HOH . Q 7 HOH A 12 2212 40 HOH HOH . Q 7 HOH A 13 2213 9 HOH HOH . Q 7 HOH A 14 2214 13 HOH HOH . Q 7 HOH A 15 2215 28 HOH HOH . Q 7 HOH A 16 2216 10 HOH HOH . Q 7 HOH A 17 2217 41 HOH HOH . Q 7 HOH A 18 2218 35 HOH HOH . Q 7 HOH A 19 2219 15 HOH HOH . Q 7 HOH A 20 2220 32 HOH HOH . Q 7 HOH A 21 2221 7 HOH HOH . Q 7 HOH A 22 2222 25 HOH HOH . Q 7 HOH A 23 2223 27 HOH HOH . Q 7 HOH A 24 2224 29 HOH HOH . Q 7 HOH A 25 2225 4 HOH HOH . Q 7 HOH A 26 2226 55 HOH HOH . Q 7 HOH A 27 2227 60 HOH HOH . Q 7 HOH A 28 2228 37 HOH HOH . Q 7 HOH A 29 2229 44 HOH HOH . Q 7 HOH A 30 2230 57 HOH HOH . Q 7 HOH A 31 2231 56 HOH HOH . R 7 HOH B 1 2401 22 HOH HOH . R 7 HOH B 2 2402 45 HOH HOH . R 7 HOH B 3 2403 47 HOH HOH . R 7 HOH B 4 2404 48 HOH HOH . R 7 HOH B 5 2405 63 HOH HOH . R 7 HOH B 6 2406 50 HOH HOH . R 7 HOH B 7 2407 64 HOH HOH . R 7 HOH B 8 2408 59 HOH HOH . R 7 HOH B 9 2409 34 HOH HOH . R 7 HOH B 10 2410 20 HOH HOH . R 7 HOH B 11 2411 51 HOH HOH . R 7 HOH B 12 2412 16 HOH HOH . R 7 HOH B 13 2413 62 HOH HOH . R 7 HOH B 14 2414 39 HOH HOH . R 7 HOH B 15 2415 12 HOH HOH . R 7 HOH B 16 2416 54 HOH HOH . R 7 HOH B 17 2417 23 HOH HOH . R 7 HOH B 18 2418 8 HOH HOH . R 7 HOH B 19 2419 11 HOH HOH . R 7 HOH B 20 2420 42 HOH HOH . R 7 HOH B 21 2421 24 HOH HOH . R 7 HOH B 22 2422 14 HOH HOH . R 7 HOH B 23 2423 31 HOH HOH . R 7 HOH B 24 2424 6 HOH HOH . R 7 HOH B 25 2425 30 HOH HOH . R 7 HOH B 26 2426 5 HOH HOH . R 7 HOH B 27 2427 26 HOH HOH . R 7 HOH B 28 2428 61 HOH HOH . R 7 HOH B 29 2429 36 HOH HOH . R 7 HOH B 30 2430 38 HOH HOH . R 7 HOH B 31 2431 43 HOH HOH . R 7 HOH B 32 2432 53 HOH HOH . R 7 HOH B 33 2433 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 4DS . . . E 3 146.082 116.855 149.308 1 151.51 ? OAA 4DS 2101 A 1 HETATM 2 S SAB 4DS . . . E 3 145.403 115.595 149.382 1 117.05 ? SAB 4DS 2101 A 1 HETATM 3 O OAC 4DS . . . E 3 146.463 114.487 149.156 1 127.98 ? OAC 4DS 2101 A 1 HETATM 4 O OAD 4DS . . . E 3 144.21 115.459 148.399 1 126.54 ? OAD 4DS 2101 A 1 HETATM 5 C CAE 4DS . . . E 3 144.699 115.368 150.973 1 95.59 ? CAE 4DS 2101 A 1 HETATM 6 C CAF 4DS . . . E 3 144.812 116.378 151.893 1 103.34 ? CAF 4DS 2101 A 1 HETATM 7 C CAG 4DS . . . E 3 144.299 116.202 153.181 1 124.02 ? CAG 4DS 2101 A 1 HETATM 8 C CAH 4DS . . . E 3 143.662 115.025 153.513 1 122.31 ? CAH 4DS 2101 A 1 HETATM 9 C CAI 4DS . . . E 3 143.555 114.011 152.594 1 114.01 ? CAI 4DS 2101 A 1 HETATM 10 C CAJ 4DS . . . E 3 144.077 114.163 151.308 1 99.43 ? CAJ 4DS 2101 A 1 HETATM 11 C CAK 4DS . . . E 3 143.963 113.055 150.337 1 103.35 ? CAK 4DS 2101 A 1 HETATM 12 C CAL 4DS . . . E 3 142.854 112.48 149.947 1 112.2 ? CAL 4DS 2101 A 1 HETATM 13 C CAM 4DS . . . E 3 142.756 111.49 148.872 1 119.92 ? CAM 4DS 2101 A 1 HETATM 14 C CAN 4DS . . . E 3 142.055 110.27 149.01 1 112.17 ? CAN 4DS 2101 A 1 HETATM 15 C CAO 4DS . . . E 3 142.011 109.354 147.962 1 110.9 ? CAO 4DS 2101 A 1 HETATM 16 C CAP 4DS . . . E 3 142.649 109.657 146.76 1 131.71 ? CAP 4DS 2101 A 1 HETATM 17 C CAQ 4DS . . . E 3 143.345 110.86 146.63 1 122.54 ? CAQ 4DS 2101 A 1 HETATM 18 C CAR 4DS . . . E 3 143.399 111.773 147.665 1 120.5 ? CAR 4DS 2101 A 1 HETATM 19 N NAS 4DS . . . E 3 142.706 108.735 145.69 1 129.76 ? NAS 4DS 2101 A 1 HETATM 20 C CAT 4DS . . . E 3 141.856 108.16 144.902 1 144.12 ? CAT 4DS 2101 A 1 HETATM 21 S SAU 4DS . . . E 3 140.85 107.537 143.825 1 199.24 ? SAU 4DS 2101 A 1 HETATM 22 S SAV 4DS . . . E 3 141.26 109.871 150.519 1 126.31 ? SAV 4DS 2101 A 1 HETATM 23 O OAW 4DS . . . E 3 142.207 109.879 151.613 1 129.81 ? OAW 4DS 2101 A 1 HETATM 24 O OAX 4DS . . . E 3 140.209 110.954 150.764 1 158.46 ? OAX 4DS 2101 A 1 HETATM 25 O OAY 4DS . . . E 3 140.686 108.431 150.277 1 153.81 ? OAY 4DS 2101 A 1 HETATM 26 N NAZ 4DS . . . E 3 144.431 117.205 154.18 1 137.55 ? NAZ 4DS 2101 A 1 HETATM 27 C CBA 4DS . . . E 3 145.595 117.637 154.561 1 140.8 ? CBA 4DS 2101 A 1 HETATM 28 S SBB 4DS . . . E 3 146.704 118.365 153.579 1 185.93 ? SBB 4DS 2101 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 93 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 1400 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #