data_8T6V # _model_server_result.job_id YwWBRqyPWvzqzErUxGiEww _model_server_result.datetime_utc '2025-03-01 03:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2103}' # _entry.id 8T6V # _exptl.entry_id 8T6V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 171 A LYS 539 1_555 E CBA 4DS . A 4DS 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 A ND2 ASN 274 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B NZ LYS 171 B LYS 539 1_555 K CBA 4DS . B 4DS 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale4 B ND2 ASN 274 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 663 n n CBA CAB Y01 sing 664 n n CBA CAN Y01 sing 665 n n CAN CAJ Y01 sing 666 n n CAJ CAO Y01 sing 667 n n CAO CBB Y01 sing 668 n n CBB CAC Y01 sing 669 n n CBB CBE Y01 sing 670 n n CBE CAP Y01 sing 671 n n CBE CBI Y01 sing 672 n n CAP CAQ Y01 sing 673 n n CAQ CBG Y01 sing 674 n n CBG CBI Y01 sing 675 n n CBG CBD Y01 sing 676 n n CBI CAE Y01 sing 677 n n CBI CAU Y01 sing 678 n n CAU CAS Y01 sing 679 n n CAS CBF Y01 sing 680 n n CBF CBD Y01 sing 681 n n CBF CBH Y01 sing 682 n n CBD CAK Y01 sing 683 n n CAK CAI Y01 sing 684 n n CAI CAZ Y01 doub 685 n n CAZ CAV Y01 sing 686 n n CAZ CBH Y01 sing 687 n n CAV CBC Y01 sing 688 n n CBH CAD Y01 sing 689 n n CBH CAT Y01 sing 690 n n CAT CAR Y01 sing 691 n n CAR CBC Y01 sing 692 n n CBC OAW Y01 sing 693 n n OAW CAY Y01 sing 694 n n CAY OAG Y01 doub 695 n n CAY CAM Y01 sing 696 n n CAM CAL Y01 sing 697 n n CAL CAX Y01 sing 698 n n CAX OAH Y01 sing 699 n n CAX OAF Y01 doub 700 n n CAA HAA1 Y01 sing 701 n n CAA HAA2 Y01 sing 702 n n CAA HAA3 Y01 sing 703 n n CBA HBA Y01 sing 704 n n CAB HAB1 Y01 sing 705 n n CAB HAB2 Y01 sing 706 n n CAB HAB3 Y01 sing 707 n n CAN HAN1 Y01 sing 708 n n CAN HAN2 Y01 sing 709 n n CAJ HAJ1 Y01 sing 710 n n CAJ HAJ2 Y01 sing 711 n n CAO HAO1 Y01 sing 712 n n CAO HAO2 Y01 sing 713 n n CBB HBB Y01 sing 714 n n CAC HAC1 Y01 sing 715 n n CAC HAC2 Y01 sing 716 n n CAC HAC3 Y01 sing 717 n n CBE HBE Y01 sing 718 n n CAP HAP1 Y01 sing 719 n n CAP HAP2 Y01 sing 720 n n CAQ HAQ1 Y01 sing 721 n n CAQ HAQ2 Y01 sing 722 n n CBG HBG Y01 sing 723 n n CBD HBD Y01 sing 724 n n CAE HAE1 Y01 sing 725 n n CAE HAE2 Y01 sing 726 n n CAE HAE3 Y01 sing 727 n n CAU HAU1 Y01 sing 728 n n CAU HAU2 Y01 sing 729 n n CAS HAS1 Y01 sing 730 n n CAS HAS2 Y01 sing 731 n n CBF HBF Y01 sing 732 n n CAK HAK1 Y01 sing 733 n n CAK HAK2 Y01 sing 734 n n CAI HAI Y01 sing 735 n n CAV HAV1 Y01 sing 736 n n CAV HAV2 Y01 sing 737 n n CBC HBC Y01 sing 738 n n CAD HAD1 Y01 sing 739 n n CAD HAD2 Y01 sing 740 n n CAD HAD3 Y01 sing 741 n n CAT HAT1 Y01 sing 742 n n CAT HAT2 Y01 sing 743 n n CAR HAR1 Y01 sing 744 n n CAR HAR2 Y01 sing 745 n n CAM HAM1 Y01 sing 746 n n CAM HAM2 Y01 sing 747 n n CAL HAL1 Y01 sing 748 n n CAL HAL2 Y01 sing 749 n n OAH HAH Y01 sing 750 n n # _atom_sites.entry_id 8T6V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 4DS A 1 2101 2101 4DS DID . F 4 CLR A 1 2102 2201 CLR CLR . G 5 Y01 A 1 2103 2202 Y01 Y01 . H 4 CLR A 1 2104 2203 CLR CLR . I 4 CLR A 1 2105 2204 CLR CLR . J 6 PC1 B 1 2301 2301 PC1 PC1 . K 3 4DS B 1 2302 2101 4DS DID . L 4 CLR B 1 2303 2201 CLR CLR . M 5 Y01 B 1 2304 2202 Y01 Y01 . N 4 CLR B 1 2305 2203 CLR CLR . O 4 CLR B 1 2306 2204 CLR CLR . P 6 PC1 B 1 2307 2301 PC1 PC1 . Q 7 HOH A 1 2201 21 HOH HOH . Q 7 HOH A 2 2202 46 HOH HOH . Q 7 HOH A 3 2203 1 HOH HOH . Q 7 HOH A 4 2204 3 HOH HOH . Q 7 HOH A 5 2205 49 HOH HOH . Q 7 HOH A 6 2206 58 HOH HOH . Q 7 HOH A 7 2207 33 HOH HOH . Q 7 HOH A 8 2208 18 HOH HOH . Q 7 HOH A 9 2209 19 HOH HOH . Q 7 HOH A 10 2210 17 HOH HOH . Q 7 HOH A 11 2211 2 HOH HOH . Q 7 HOH A 12 2212 40 HOH HOH . Q 7 HOH A 13 2213 9 HOH HOH . Q 7 HOH A 14 2214 13 HOH HOH . Q 7 HOH A 15 2215 28 HOH HOH . Q 7 HOH A 16 2216 10 HOH HOH . Q 7 HOH A 17 2217 41 HOH HOH . Q 7 HOH A 18 2218 35 HOH HOH . Q 7 HOH A 19 2219 15 HOH HOH . Q 7 HOH A 20 2220 32 HOH HOH . Q 7 HOH A 21 2221 7 HOH HOH . Q 7 HOH A 22 2222 25 HOH HOH . Q 7 HOH A 23 2223 27 HOH HOH . Q 7 HOH A 24 2224 29 HOH HOH . Q 7 HOH A 25 2225 4 HOH HOH . Q 7 HOH A 26 2226 55 HOH HOH . Q 7 HOH A 27 2227 60 HOH HOH . Q 7 HOH A 28 2228 37 HOH HOH . Q 7 HOH A 29 2229 44 HOH HOH . Q 7 HOH A 30 2230 57 HOH HOH . Q 7 HOH A 31 2231 56 HOH HOH . R 7 HOH B 1 2401 22 HOH HOH . R 7 HOH B 2 2402 45 HOH HOH . R 7 HOH B 3 2403 47 HOH HOH . R 7 HOH B 4 2404 48 HOH HOH . R 7 HOH B 5 2405 63 HOH HOH . R 7 HOH B 6 2406 50 HOH HOH . R 7 HOH B 7 2407 64 HOH HOH . R 7 HOH B 8 2408 59 HOH HOH . R 7 HOH B 9 2409 34 HOH HOH . R 7 HOH B 10 2410 20 HOH HOH . R 7 HOH B 11 2411 51 HOH HOH . R 7 HOH B 12 2412 16 HOH HOH . R 7 HOH B 13 2413 62 HOH HOH . R 7 HOH B 14 2414 39 HOH HOH . R 7 HOH B 15 2415 12 HOH HOH . R 7 HOH B 16 2416 54 HOH HOH . R 7 HOH B 17 2417 23 HOH HOH . R 7 HOH B 18 2418 8 HOH HOH . R 7 HOH B 19 2419 11 HOH HOH . R 7 HOH B 20 2420 42 HOH HOH . R 7 HOH B 21 2421 24 HOH HOH . R 7 HOH B 22 2422 14 HOH HOH . R 7 HOH B 23 2423 31 HOH HOH . R 7 HOH B 24 2424 6 HOH HOH . R 7 HOH B 25 2425 30 HOH HOH . R 7 HOH B 26 2426 5 HOH HOH . R 7 HOH B 27 2427 26 HOH HOH . R 7 HOH B 28 2428 61 HOH HOH . R 7 HOH B 29 2429 36 HOH HOH . R 7 HOH B 30 2430 38 HOH HOH . R 7 HOH B 31 2431 43 HOH HOH . R 7 HOH B 32 2432 53 HOH HOH . R 7 HOH B 33 2433 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 5 124.754 113.866 141.078 1 196.61 ? CAA Y01 2103 A 1 HETATM 2 C CBA Y01 . . . G 5 123.722 113.135 140.225 1 208.56 ? CBA Y01 2103 A 1 HETATM 3 C CAB Y01 . . . G 5 124.356 111.979 139.459 1 227.78 ? CAB Y01 2103 A 1 HETATM 4 C CAN Y01 . . . G 5 123.018 114.103 139.274 1 226.07 ? CAN Y01 2103 A 1 HETATM 5 C CAJ Y01 . . . G 5 123.898 114.749 138.22 1 213.79 ? CAJ Y01 2103 A 1 HETATM 6 C CAO Y01 . . . G 5 123.726 114.139 136.838 1 188.05 ? CAO Y01 2103 A 1 HETATM 7 C CBB Y01 . . . G 5 123.178 115.09 135.756 1 173.24 ? CBB Y01 2103 A 1 HETATM 8 C CAC Y01 . . . G 5 124.084 116.314 135.629 1 199.13 ? CAC Y01 2103 A 1 HETATM 9 C CBE Y01 . . . G 5 122.978 114.351 134.416 1 167.42 ? CBE Y01 2103 A 1 HETATM 10 C CAP Y01 . . . G 5 122.596 112.852 134.592 1 188.37 ? CAP Y01 2103 A 1 HETATM 11 C CAQ Y01 . . . G 5 121.842 112.407 133.318 1 178.63 ? CAQ Y01 2103 A 1 HETATM 12 C CBG Y01 . . . G 5 121.81 113.663 132.436 1 162.51 ? CBG Y01 2103 A 1 HETATM 13 C CBI Y01 . . . G 5 121.939 114.871 133.379 1 147.69 ? CBI Y01 2103 A 1 HETATM 14 C CAE Y01 . . . G 5 120.581 115.152 134.064 1 178.98 ? CAE Y01 2103 A 1 HETATM 15 C CAU Y01 . . . G 5 122.409 116.012 132.468 1 127.35 ? CAU Y01 2103 A 1 HETATM 16 C CAS Y01 . . . G 5 121.441 116.273 131.286 1 149.07 ? CAS Y01 2103 A 1 HETATM 17 C CBF Y01 . . . G 5 120.886 115.043 130.531 1 123.48 ? CBF Y01 2103 A 1 HETATM 18 C CBD Y01 . . . G 5 120.673 113.826 131.443 1 153.67 ? CBD Y01 2103 A 1 HETATM 19 C CAK Y01 . . . G 5 120.517 112.589 130.561 1 237.76 ? CAK Y01 2103 A 1 HETATM 20 C CAI Y01 . . . G 5 119.485 112.822 129.504 1 233.24 ? CAI Y01 2103 A 1 HETATM 21 C CAZ Y01 . . . G 5 119.003 114.01 129.176 1 215.89 ? CAZ Y01 2103 A 1 HETATM 22 C CAV Y01 . . . G 5 117.869 114.098 128.169 1 229.72 ? CAV Y01 2103 A 1 HETATM 23 C CBH Y01 . . . G 5 119.574 115.325 129.73 1 180.8 ? CBH Y01 2103 A 1 HETATM 24 C CAD Y01 . . . G 5 118.496 115.99 130.61 1 233.78 ? CAD Y01 2103 A 1 HETATM 25 C CAT Y01 . . . G 5 119.836 116.257 128.525 1 188.13 ? CAT Y01 2103 A 1 HETATM 26 C CAR Y01 . . . G 5 118.62 116.392 127.598 1 226.27 ? CAR Y01 2103 A 1 HETATM 27 C CBC Y01 . . . G 5 118.194 115.053 127.04 1 272.56 ? CBC Y01 2103 A 1 HETATM 28 O OAW Y01 . . . G 5 116.98 115.2 126.232 1 292.44 ? OAW Y01 2103 A 1 HETATM 29 C CAY Y01 . . . G 5 116.562 114.17 125.482 1 308.91 ? CAY Y01 2103 A 1 HETATM 30 O OAG Y01 . . . G 5 117.216 113.184 125.263 1 298.9 ? OAG Y01 2103 A 1 HETATM 31 C CAM Y01 . . . G 5 115.149 114.361 124.991 1 317.2 ? CAM Y01 2103 A 1 HETATM 32 C CAL Y01 . . . G 5 114.906 113.796 123.605 1 307.36 ? CAL Y01 2103 A 1 HETATM 33 C CAX Y01 . . . G 5 115.718 114.468 122.511 1 285.35 ? CAX Y01 2103 A 1 HETATM 34 O OAH Y01 . . . G 5 115.982 115.688 122.633 1 257.96 ? OAH Y01 2103 A 1 HETATM 35 O OAF Y01 . . . G 5 116.066 113.774 121.533 1 231.43 ? OAF Y01 2103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #