data_8T6V # _model_server_result.job_id peFeCwJLE1YYgy98M4J8HQ _model_server_result.datetime_utc '2025-03-01 03:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2104}' # _entry.id 8T6V # _exptl.entry_id 8T6V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T6V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 N N N ? 4 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 171 A LYS 539 1_555 E CBA 4DS . A 4DS 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 A ND2 ASN 274 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B NZ LYS 171 B LYS 539 1_555 K CBA 4DS . B 4DS 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale4 B ND2 ASN 274 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 109 n n C1 C10 CLR sing 110 n n C1 H11 CLR sing 111 n n C1 H12 CLR sing 112 n n C2 C3 CLR sing 113 n n C2 H21 CLR sing 114 n n C2 H22 CLR sing 115 n n C3 C4 CLR sing 116 n n C3 O1 CLR sing 117 n n C3 H3 CLR sing 118 n n C4 C5 CLR sing 119 n n C4 H41 CLR sing 120 n n C4 H42 CLR sing 121 n n C5 C6 CLR doub 122 n n C5 C10 CLR sing 123 n n C6 C7 CLR sing 124 n n C6 H6 CLR sing 125 n n C7 C8 CLR sing 126 n n C7 H71 CLR sing 127 n n C7 H72 CLR sing 128 n n C8 C9 CLR sing 129 n n C8 C14 CLR sing 130 n n C8 H8 CLR sing 131 n n C9 C10 CLR sing 132 n n C9 C11 CLR sing 133 n n C9 H9 CLR sing 134 n n C10 C19 CLR sing 135 n n C11 C12 CLR sing 136 n n C11 H111 CLR sing 137 n n C11 H112 CLR sing 138 n n C12 C13 CLR sing 139 n n C12 H121 CLR sing 140 n n C12 H122 CLR sing 141 n n C13 C14 CLR sing 142 n n C13 C17 CLR sing 143 n n C13 C18 CLR sing 144 n n C14 C15 CLR sing 145 n n C14 H14 CLR sing 146 n n C15 C16 CLR sing 147 n n C15 H151 CLR sing 148 n n C15 H152 CLR sing 149 n n C16 C17 CLR sing 150 n n C16 H161 CLR sing 151 n n C16 H162 CLR sing 152 n n C17 C20 CLR sing 153 n n C17 H17 CLR sing 154 n n C18 H181 CLR sing 155 n n C18 H182 CLR sing 156 n n C18 H183 CLR sing 157 n n C19 H191 CLR sing 158 n n C19 H192 CLR sing 159 n n C19 H193 CLR sing 160 n n C20 C21 CLR sing 161 n n C20 C22 CLR sing 162 n n C20 H20 CLR sing 163 n n C21 H211 CLR sing 164 n n C21 H212 CLR sing 165 n n C21 H213 CLR sing 166 n n C22 C23 CLR sing 167 n n C22 H221 CLR sing 168 n n C22 H222 CLR sing 169 n n C23 C24 CLR sing 170 n n C23 H231 CLR sing 171 n n C23 H232 CLR sing 172 n n C24 C25 CLR sing 173 n n C24 H241 CLR sing 174 n n C24 H242 CLR sing 175 n n C25 C26 CLR sing 176 n n C25 C27 CLR sing 177 n n C25 H25 CLR sing 178 n n C26 H261 CLR sing 179 n n C26 H262 CLR sing 180 n n C26 H263 CLR sing 181 n n C27 H271 CLR sing 182 n n C27 H272 CLR sing 183 n n C27 H273 CLR sing 184 n n O1 H1 CLR sing 185 n n # _atom_sites.entry_id 8T6V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 4DS A 1 2101 2101 4DS DID . F 4 CLR A 1 2102 2201 CLR CLR . G 5 Y01 A 1 2103 2202 Y01 Y01 . H 4 CLR A 1 2104 2203 CLR CLR . I 4 CLR A 1 2105 2204 CLR CLR . J 6 PC1 B 1 2301 2301 PC1 PC1 . K 3 4DS B 1 2302 2101 4DS DID . L 4 CLR B 1 2303 2201 CLR CLR . M 5 Y01 B 1 2304 2202 Y01 Y01 . N 4 CLR B 1 2305 2203 CLR CLR . O 4 CLR B 1 2306 2204 CLR CLR . P 6 PC1 B 1 2307 2301 PC1 PC1 . Q 7 HOH A 1 2201 21 HOH HOH . Q 7 HOH A 2 2202 46 HOH HOH . Q 7 HOH A 3 2203 1 HOH HOH . Q 7 HOH A 4 2204 3 HOH HOH . Q 7 HOH A 5 2205 49 HOH HOH . Q 7 HOH A 6 2206 58 HOH HOH . Q 7 HOH A 7 2207 33 HOH HOH . Q 7 HOH A 8 2208 18 HOH HOH . Q 7 HOH A 9 2209 19 HOH HOH . Q 7 HOH A 10 2210 17 HOH HOH . Q 7 HOH A 11 2211 2 HOH HOH . Q 7 HOH A 12 2212 40 HOH HOH . Q 7 HOH A 13 2213 9 HOH HOH . Q 7 HOH A 14 2214 13 HOH HOH . Q 7 HOH A 15 2215 28 HOH HOH . Q 7 HOH A 16 2216 10 HOH HOH . Q 7 HOH A 17 2217 41 HOH HOH . Q 7 HOH A 18 2218 35 HOH HOH . Q 7 HOH A 19 2219 15 HOH HOH . Q 7 HOH A 20 2220 32 HOH HOH . Q 7 HOH A 21 2221 7 HOH HOH . Q 7 HOH A 22 2222 25 HOH HOH . Q 7 HOH A 23 2223 27 HOH HOH . Q 7 HOH A 24 2224 29 HOH HOH . Q 7 HOH A 25 2225 4 HOH HOH . Q 7 HOH A 26 2226 55 HOH HOH . Q 7 HOH A 27 2227 60 HOH HOH . Q 7 HOH A 28 2228 37 HOH HOH . Q 7 HOH A 29 2229 44 HOH HOH . Q 7 HOH A 30 2230 57 HOH HOH . Q 7 HOH A 31 2231 56 HOH HOH . R 7 HOH B 1 2401 22 HOH HOH . R 7 HOH B 2 2402 45 HOH HOH . R 7 HOH B 3 2403 47 HOH HOH . R 7 HOH B 4 2404 48 HOH HOH . R 7 HOH B 5 2405 63 HOH HOH . R 7 HOH B 6 2406 50 HOH HOH . R 7 HOH B 7 2407 64 HOH HOH . R 7 HOH B 8 2408 59 HOH HOH . R 7 HOH B 9 2409 34 HOH HOH . R 7 HOH B 10 2410 20 HOH HOH . R 7 HOH B 11 2411 51 HOH HOH . R 7 HOH B 12 2412 16 HOH HOH . R 7 HOH B 13 2413 62 HOH HOH . R 7 HOH B 14 2414 39 HOH HOH . R 7 HOH B 15 2415 12 HOH HOH . R 7 HOH B 16 2416 54 HOH HOH . R 7 HOH B 17 2417 23 HOH HOH . R 7 HOH B 18 2418 8 HOH HOH . R 7 HOH B 19 2419 11 HOH HOH . R 7 HOH B 20 2420 42 HOH HOH . R 7 HOH B 21 2421 24 HOH HOH . R 7 HOH B 22 2422 14 HOH HOH . R 7 HOH B 23 2423 31 HOH HOH . R 7 HOH B 24 2424 6 HOH HOH . R 7 HOH B 25 2425 30 HOH HOH . R 7 HOH B 26 2426 5 HOH HOH . R 7 HOH B 27 2427 26 HOH HOH . R 7 HOH B 28 2428 61 HOH HOH . R 7 HOH B 29 2429 36 HOH HOH . R 7 HOH B 30 2430 38 HOH HOH . R 7 HOH B 31 2431 43 HOH HOH . R 7 HOH B 32 2432 53 HOH HOH . R 7 HOH B 33 2433 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 4 168.706 92.07 132.066 1 235.57 ? C1 CLR 2104 A 1 HETATM 2 C C2 CLR . . . H 4 169.388 91.811 130.72 1 255.71 ? C2 CLR 2104 A 1 HETATM 3 C C3 CLR . . . H 4 169.459 93.062 129.877 1 263.36 ? C3 CLR 2104 A 1 HETATM 4 C C4 CLR . . . H 4 170.147 94.174 130.648 1 251.11 ? C4 CLR 2104 A 1 HETATM 5 C C5 CLR . . . H 4 169.526 94.421 132.01 1 217.33 ? C5 CLR 2104 A 1 HETATM 6 C C6 CLR . . . H 4 169.19 95.646 132.388 1 224.48 ? C6 CLR 2104 A 1 HETATM 7 C C7 CLR . . . H 4 168.561 95.998 133.697 1 227.84 ? C7 CLR 2104 A 1 HETATM 8 C C8 CLR . . . H 4 168.757 94.903 134.741 1 196.01 ? C8 CLR 2104 A 1 HETATM 9 C C9 CLR . . . H 4 168.441 93.53 134.122 1 198.51 ? C9 CLR 2104 A 1 HETATM 10 C C10 CLR . . . H 4 169.359 93.196 132.907 1 229.55 ? C10 CLR 2104 A 1 HETATM 11 C C11 CLR . . . H 4 168.426 92.416 135.187 1 220.74 ? C11 CLR 2104 A 1 HETATM 12 C C12 CLR . . . H 4 167.66 92.746 136.476 1 209.27 ? C12 CLR 2104 A 1 HETATM 13 C C13 CLR . . . H 4 168.03 94.102 137.082 1 195.53 ? C13 CLR 2104 A 1 HETATM 14 C C14 CLR . . . H 4 167.861 95.131 135.95 1 193.02 ? C14 CLR 2104 A 1 HETATM 15 C C15 CLR . . . H 4 167.926 96.477 136.665 1 240.19 ? C15 CLR 2104 A 1 HETATM 16 C C16 CLR . . . H 4 167.196 96.218 137.995 1 217.07 ? C16 CLR 2104 A 1 HETATM 17 C C17 CLR . . . H 4 167.061 94.682 138.162 1 191.35 ? C17 CLR 2104 A 1 HETATM 18 C C18 CLR . . . H 4 169.467 94.06 137.63 1 196.05 ? C18 CLR 2104 A 1 HETATM 19 C C19 CLR . . . H 4 170.761 92.759 133.387 1 246.33 ? C19 CLR 2104 A 1 HETATM 20 C C20 CLR . . . H 4 167.226 94.293 139.642 1 207.99 ? C20 CLR 2104 A 1 HETATM 21 C C21 CLR . . . H 4 167.284 92.779 139.86 1 224.34 ? C21 CLR 2104 A 1 HETATM 22 C C22 CLR . . . H 4 166.11 94.943 140.477 1 211.05 ? C22 CLR 2104 A 1 HETATM 23 C C23 CLR . . . H 4 166.409 95.122 141.956 1 228.57 ? C23 CLR 2104 A 1 HETATM 24 C C24 CLR . . . H 4 166.578 96.565 142.366 1 248.91 ? C24 CLR 2104 A 1 HETATM 25 C C25 CLR . . . H 4 165.314 97.292 142.864 1 243.77 ? C25 CLR 2104 A 1 HETATM 26 C C26 CLR . . . H 4 165.503 98.806 142.834 1 265.54 ? C26 CLR 2104 A 1 HETATM 27 C C27 CLR . . . H 4 164.923 96.847 144.266 1 208.47 ? C27 CLR 2104 A 1 HETATM 28 O O1 CLR . . . H 4 170.173 92.794 128.661 1 254.17 ? O1 CLR 2104 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #