data_8T7O # _model_server_result.job_id sdgjxcXK3rCGhAFDUEV6xg _model_server_result.datetime_utc '2025-07-05 13:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 8T7O # _exptl.entry_id 8T7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T7O _cell.length_a 79.445 _cell.length_b 79.445 _cell.length_c 305.312 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 304 n n PA O2A NAP sing 305 n n PA O5B NAP sing 306 n n PA O3 NAP sing 307 n n O2A HOA2 NAP sing 308 n n O5B C5B NAP sing 309 n n C5B C4B NAP sing 310 n n C5B H51A NAP sing 311 n n C5B H52A NAP sing 312 n n C4B O4B NAP sing 313 n n C4B C3B NAP sing 314 n n C4B H4B NAP sing 315 n n O4B C1B NAP sing 316 n n C3B O3B NAP sing 317 n n C3B C2B NAP sing 318 n n C3B H3B NAP sing 319 n n O3B HO3A NAP sing 320 n n C2B O2B NAP sing 321 n n C2B C1B NAP sing 322 n n C2B H2B NAP sing 323 n n O2B P2B NAP sing 324 n n C1B N9A NAP sing 325 n n C1B H1B NAP sing 326 n n N9A C8A NAP sing 327 n y N9A C4A NAP sing 328 n y C8A N7A NAP doub 329 n y C8A H8A NAP sing 330 n n N7A C5A NAP sing 331 n y C5A C6A NAP sing 332 n y C5A C4A NAP doub 333 n y C6A N6A NAP sing 334 n n C6A N1A NAP doub 335 n y N6A H61A NAP sing 336 n n N6A H62A NAP sing 337 n n N1A C2A NAP sing 338 n y C2A N3A NAP doub 339 n y C2A H2A NAP sing 340 n n N3A C4A NAP sing 341 n y O3 PN NAP sing 342 n n PN O1N NAP doub 343 n n PN O2N NAP sing 344 n n PN O5D NAP sing 345 n n O5D C5D NAP sing 346 n n C5D C4D NAP sing 347 n n C5D H51N NAP sing 348 n n C5D H52N NAP sing 349 n n C4D O4D NAP sing 350 n n C4D C3D NAP sing 351 n n C4D H4D NAP sing 352 n n O4D C1D NAP sing 353 n n C3D O3D NAP sing 354 n n C3D C2D NAP sing 355 n n C3D H3D NAP sing 356 n n O3D HO3N NAP sing 357 n n C2D O2D NAP sing 358 n n C2D C1D NAP sing 359 n n C2D H2D NAP sing 360 n n O2D HO2N NAP sing 361 n n C1D N1N NAP sing 362 n n C1D H1D NAP sing 363 n n N1N C2N NAP sing 364 n y N1N C6N NAP doub 365 n y C2N C3N NAP doub 366 n y C2N H2N NAP sing 367 n n C3N C7N NAP sing 368 n n C3N C4N NAP sing 369 n y C7N O7N NAP doub 370 n n C7N N7N NAP sing 371 n n N7N H71N NAP sing 372 n n N7N H72N NAP sing 373 n n C4N C5N NAP doub 374 n y C4N H4N NAP sing 375 n n C5N C6N NAP sing 376 n y C5N H5N NAP sing 377 n n C6N H6N NAP sing 378 n n P2B O1X NAP doub 379 n n P2B O2X NAP sing 380 n n P2B O3X NAP sing 381 n n O2X HOP2 NAP sing 382 n n O3X HOP3 NAP sing 383 n n # _atom_sites.entry_id 8T7O _atom_sites.fract_transf_matrix[1][1] 0.012587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 500 NAP NDP . D 3 IV3 A 1 502 601 IV3 LIG . E 2 NAP B 1 500 500 NAP NDP . F 4 HOH A 1 601 136 HOH HOH . F 4 HOH A 2 602 99 HOH HOH . F 4 HOH A 3 603 142 HOH HOH . F 4 HOH A 4 604 146 HOH HOH . F 4 HOH A 5 605 147 HOH HOH . F 4 HOH A 6 606 111 HOH HOH . F 4 HOH A 7 607 110 HOH HOH . F 4 HOH A 8 608 8 HOH HOH . F 4 HOH A 9 609 119 HOH HOH . F 4 HOH A 10 610 61 HOH HOH . F 4 HOH A 11 611 17 HOH HOH . F 4 HOH A 12 612 108 HOH HOH . F 4 HOH A 13 613 14 HOH HOH . F 4 HOH A 14 614 30 HOH HOH . F 4 HOH A 15 615 88 HOH HOH . F 4 HOH A 16 616 145 HOH HOH . F 4 HOH A 17 617 126 HOH HOH . F 4 HOH A 18 618 28 HOH HOH . F 4 HOH A 19 619 134 HOH HOH . F 4 HOH A 20 620 16 HOH HOH . F 4 HOH A 21 621 11 HOH HOH . F 4 HOH A 22 622 39 HOH HOH . F 4 HOH A 23 623 72 HOH HOH . F 4 HOH A 24 624 103 HOH HOH . F 4 HOH A 25 625 34 HOH HOH . F 4 HOH A 26 626 5 HOH HOH . F 4 HOH A 27 627 18 HOH HOH . F 4 HOH A 28 628 84 HOH HOH . F 4 HOH A 29 629 53 HOH HOH . F 4 HOH A 30 630 20 HOH HOH . F 4 HOH A 31 631 7 HOH HOH . F 4 HOH A 32 632 36 HOH HOH . F 4 HOH A 33 633 33 HOH HOH . F 4 HOH A 34 634 50 HOH HOH . F 4 HOH A 35 635 127 HOH HOH . F 4 HOH A 36 636 95 HOH HOH . F 4 HOH A 37 637 85 HOH HOH . F 4 HOH A 38 638 64 HOH HOH . F 4 HOH A 39 639 9 HOH HOH . F 4 HOH A 40 640 141 HOH HOH . F 4 HOH A 41 641 139 HOH HOH . F 4 HOH A 42 642 27 HOH HOH . F 4 HOH A 43 643 128 HOH HOH . F 4 HOH A 44 644 59 HOH HOH . F 4 HOH A 45 645 112 HOH HOH . F 4 HOH A 46 646 125 HOH HOH . F 4 HOH A 47 647 86 HOH HOH . F 4 HOH A 48 648 48 HOH HOH . F 4 HOH A 49 649 1 HOH HOH . F 4 HOH A 50 650 22 HOH HOH . F 4 HOH A 51 651 70 HOH HOH . F 4 HOH A 52 652 80 HOH HOH . F 4 HOH A 53 653 123 HOH HOH . F 4 HOH A 54 654 87 HOH HOH . F 4 HOH A 55 655 13 HOH HOH . F 4 HOH A 56 656 37 HOH HOH . F 4 HOH A 57 657 104 HOH HOH . F 4 HOH A 58 658 71 HOH HOH . F 4 HOH A 59 659 156 HOH HOH . F 4 HOH A 60 660 140 HOH HOH . F 4 HOH A 61 661 32 HOH HOH . F 4 HOH A 62 662 52 HOH HOH . F 4 HOH A 63 663 58 HOH HOH . F 4 HOH A 64 664 74 HOH HOH . F 4 HOH A 65 665 143 HOH HOH . F 4 HOH A 66 666 92 HOH HOH . F 4 HOH A 67 667 45 HOH HOH . F 4 HOH A 68 668 138 HOH HOH . F 4 HOH A 69 669 77 HOH HOH . F 4 HOH A 70 670 133 HOH HOH . F 4 HOH A 71 671 63 HOH HOH . F 4 HOH A 72 672 106 HOH HOH . F 4 HOH A 73 673 93 HOH HOH . F 4 HOH A 74 674 124 HOH HOH . F 4 HOH A 75 675 43 HOH HOH . F 4 HOH A 76 676 101 HOH HOH . F 4 HOH A 77 677 57 HOH HOH . F 4 HOH A 78 678 82 HOH HOH . F 4 HOH A 79 679 132 HOH HOH . F 4 HOH A 80 680 113 HOH HOH . F 4 HOH A 81 681 107 HOH HOH . F 4 HOH A 82 682 148 HOH HOH . F 4 HOH A 83 683 118 HOH HOH . F 4 HOH A 84 684 98 HOH HOH . F 4 HOH A 85 685 97 HOH HOH . G 4 HOH B 1 601 109 HOH HOH . G 4 HOH B 2 602 115 HOH HOH . G 4 HOH B 3 603 120 HOH HOH . G 4 HOH B 4 604 114 HOH HOH . G 4 HOH B 5 605 105 HOH HOH . G 4 HOH B 6 606 100 HOH HOH . G 4 HOH B 7 607 135 HOH HOH . G 4 HOH B 8 608 51 HOH HOH . G 4 HOH B 9 609 102 HOH HOH . G 4 HOH B 10 610 2 HOH HOH . G 4 HOH B 11 611 155 HOH HOH . G 4 HOH B 12 612 83 HOH HOH . G 4 HOH B 13 613 44 HOH HOH . G 4 HOH B 14 614 24 HOH HOH . G 4 HOH B 15 615 79 HOH HOH . G 4 HOH B 16 616 131 HOH HOH . G 4 HOH B 17 617 49 HOH HOH . G 4 HOH B 18 618 60 HOH HOH . G 4 HOH B 19 619 10 HOH HOH . G 4 HOH B 20 620 4 HOH HOH . G 4 HOH B 21 621 3 HOH HOH . G 4 HOH B 22 622 129 HOH HOH . G 4 HOH B 23 623 62 HOH HOH . G 4 HOH B 24 624 144 HOH HOH . G 4 HOH B 25 625 12 HOH HOH . G 4 HOH B 26 626 23 HOH HOH . G 4 HOH B 27 627 149 HOH HOH . G 4 HOH B 28 628 42 HOH HOH . G 4 HOH B 29 629 40 HOH HOH . G 4 HOH B 30 630 47 HOH HOH . G 4 HOH B 31 631 6 HOH HOH . G 4 HOH B 32 632 55 HOH HOH . G 4 HOH B 33 633 121 HOH HOH . G 4 HOH B 34 634 21 HOH HOH . G 4 HOH B 35 635 81 HOH HOH . G 4 HOH B 36 636 15 HOH HOH . G 4 HOH B 37 637 122 HOH HOH . G 4 HOH B 38 638 137 HOH HOH . G 4 HOH B 39 639 46 HOH HOH . G 4 HOH B 40 640 65 HOH HOH . G 4 HOH B 41 641 54 HOH HOH . G 4 HOH B 42 642 35 HOH HOH . G 4 HOH B 43 643 29 HOH HOH . G 4 HOH B 44 644 152 HOH HOH . G 4 HOH B 45 645 67 HOH HOH . G 4 HOH B 46 646 26 HOH HOH . G 4 HOH B 47 647 38 HOH HOH . G 4 HOH B 48 648 94 HOH HOH . G 4 HOH B 49 649 91 HOH HOH . G 4 HOH B 50 650 41 HOH HOH . G 4 HOH B 51 651 31 HOH HOH . G 4 HOH B 52 652 69 HOH HOH . G 4 HOH B 53 653 154 HOH HOH . G 4 HOH B 54 654 130 HOH HOH . G 4 HOH B 55 655 56 HOH HOH . G 4 HOH B 56 656 76 HOH HOH . G 4 HOH B 57 657 75 HOH HOH . G 4 HOH B 58 658 25 HOH HOH . G 4 HOH B 59 659 96 HOH HOH . G 4 HOH B 60 660 68 HOH HOH . G 4 HOH B 61 661 73 HOH HOH . G 4 HOH B 62 662 117 HOH HOH . G 4 HOH B 63 663 66 HOH HOH . G 4 HOH B 64 664 19 HOH HOH . G 4 HOH B 65 665 78 HOH HOH . G 4 HOH B 66 666 153 HOH HOH . G 4 HOH B 67 667 89 HOH HOH . G 4 HOH B 68 668 90 HOH HOH . G 4 HOH B 69 669 150 HOH HOH . G 4 HOH B 70 670 151 HOH HOH . G 4 HOH B 71 671 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 20.739 2.477 15.038 1 142.03 ? PA NAP 500 B 1 HETATM 2 O O1A NAP . . . E 2 21.934 1.871 14.404 1 142.06 ? O1A NAP 500 B 1 HETATM 3 O O2A NAP . . . E 2 20.211 1.514 16.095 1 141.96 ? O2A NAP 500 B 1 HETATM 4 O O5B NAP . . . E 2 19.472 2.703 14.052 1 142.51 ? O5B NAP 500 B 1 HETATM 5 C C5B NAP . . . E 2 19.404 3.675 12.988 1 142.9 ? C5B NAP 500 B 1 HETATM 6 C C4B NAP . . . E 2 17.963 3.727 12.545 1 143.28 ? C4B NAP 500 B 1 HETATM 7 O O4B NAP . . . E 2 17.542 2.397 12.155 1 143.42 ? O4B NAP 500 B 1 HETATM 8 C C3B NAP . . . E 2 16.978 4.174 13.625 1 143.43 ? C3B NAP 500 B 1 HETATM 9 O O3B NAP . . . E 2 16.794 5.585 13.636 1 143.35 ? O3B NAP 500 B 1 HETATM 10 C C2B NAP . . . E 2 15.716 3.409 13.233 1 143.62 ? C2B NAP 500 B 1 HETATM 11 O O2B NAP . . . E 2 15.038 4.066 12.141 1 144.04 ? O2B NAP 500 B 1 HETATM 12 C C1B NAP . . . E 2 16.299 2.078 12.757 1 143.41 ? C1B NAP 500 B 1 HETATM 13 N N9A NAP . . . E 2 16.528 1.083 13.807 1 143.13 ? N9A NAP 500 B 1 HETATM 14 C C8A NAP . . . E 2 17.735 0.546 14.171 1 142.97 ? C8A NAP 500 B 1 HETATM 15 N N7A NAP . . . E 2 17.663 -0.313 15.159 1 142.84 ? N7A NAP 500 B 1 HETATM 16 C C5A NAP . . . E 2 16.311 -0.35 15.465 1 142.8 ? C5A NAP 500 B 1 HETATM 17 C C6A NAP . . . E 2 15.576 -1.071 16.425 1 142.64 ? C6A NAP 500 B 1 HETATM 18 N N6A NAP . . . E 2 16.129 -1.889 17.323 1 142.47 ? N6A NAP 500 B 1 HETATM 19 N N1A NAP . . . E 2 14.237 -0.891 16.453 1 142.69 ? N1A NAP 500 B 1 HETATM 20 C C2A NAP . . . E 2 13.683 -0.04 15.585 1 142.75 ? C2A NAP 500 B 1 HETATM 21 N N3A NAP . . . E 2 14.273 0.7 14.643 1 142.82 ? N3A NAP 500 B 1 HETATM 22 C C4A NAP . . . E 2 15.598 0.5 14.635 1 142.95 ? C4A NAP 500 B 1 HETATM 23 O O3 NAP . . . E 2 21.138 3.831 15.781 1 141.55 ? O3 NAP 500 B 1 HETATM 24 P PN NAP . . . E 2 21.898 5.18 15.398 1 141.02 ? PN NAP 500 B 1 HETATM 25 O O1N NAP . . . E 2 22.155 5.234 13.939 1 141.06 ? O1N NAP 500 B 1 HETATM 26 O O2N NAP . . . E 2 20.96 6.331 15.773 1 140.95 ? O2N NAP 500 B 1 HETATM 27 O O5D NAP . . . E 2 23.253 5.277 16.279 1 140.36 ? O5D NAP 500 B 1 HETATM 28 C C5D NAP . . . E 2 23.435 6.129 17.431 1 139.64 ? C5D NAP 500 B 1 HETATM 29 C C4D NAP . . . E 2 24.767 5.877 18.092 1 138.93 ? C4D NAP 500 B 1 HETATM 30 O O4D NAP . . . E 2 25.007 4.462 18.189 1 138.65 ? O4D NAP 500 B 1 HETATM 31 C C3D NAP . . . E 2 25.989 6.471 17.388 1 138.63 ? C3D NAP 500 B 1 HETATM 32 O O3D NAP . . . E 2 26.397 7.697 17.989 1 138.47 ? O3D NAP 500 B 1 HETATM 33 C C2D NAP . . . E 2 27.05 5.353 17.454 1 138.5 ? C2D NAP 500 B 1 HETATM 34 O O2D NAP . . . E 2 28.29 5.785 17.998 1 138.4 ? O2D NAP 500 B 1 HETATM 35 C C1D NAP . . . E 2 26.395 4.287 18.339 1 138.47 ? C1D NAP 500 B 1 HETATM 36 N N1N NAP . . . E 2 26.734 2.891 18.01 1 138.33 ? N1N NAP 500 B 1 HETATM 37 C C2N NAP . . . E 2 26.608 1.908 18.961 1 138.2 ? C2N NAP 500 B 1 HETATM 38 C C3N NAP . . . E 2 26.905 0.615 18.724 1 138.1 ? C3N NAP 500 B 1 HETATM 39 C C7N NAP . . . E 2 26.742 -0.336 19.851 1 137.85 ? C7N NAP 500 B 1 HETATM 40 O O7N NAP . . . E 2 27.01 0.013 21.012 1 137.68 ? O7N NAP 500 B 1 HETATM 41 N N7N NAP . . . E 2 26.304 -1.557 19.573 1 137.77 ? N7N NAP 500 B 1 HETATM 42 C C4N NAP . . . E 2 27.396 0.148 17.378 1 138.16 ? C4N NAP 500 B 1 HETATM 43 C C5N NAP . . . E 2 27.488 1.299 16.43 1 138.21 ? C5N NAP 500 B 1 HETATM 44 C C6N NAP . . . E 2 27.176 2.54 16.756 1 138.28 ? C6N NAP 500 B 1 HETATM 45 P P2B NAP . . . E 2 13.458 3.97 11.813 1 144.44 ? P2B NAP 500 B 1 HETATM 46 O O1X NAP . . . E 2 12.69 4.784 12.785 1 144.48 ? O1X NAP 500 B 1 HETATM 47 O O2X NAP . . . E 2 13.295 4.464 10.365 1 144.47 ? O2X NAP 500 B 1 HETATM 48 O O3X NAP . . . E 2 13.072 2.478 11.863 1 144.48 ? O3X NAP 500 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 139 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 630 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #