data_8T7X # _model_server_result.job_id hlanaybyt5PdB8NzEPFWyw _model_server_result.datetime_utc '2024-10-12 02:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8T7X # _exptl.entry_id 8T7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.324 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T7X _cell.length_a 68.479 _cell.length_b 68.479 _cell.length_c 60.082 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 3 1_555 D N3 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 3 1_555 D O2 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 3 1_555 D N4 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 4 A DA 4 1_555 D N3 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 4 A DA 4 1_555 D O4 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog6 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 6 A DT 6 1_555 D N1 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 6 A DT 6 1_555 D N6 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 7 A DT 7 1_555 D N1 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 7 A DT 7 1_555 D N6 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 8 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 8 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 8 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 10 A DT 10 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 10 A DT 10 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 11 A DG 11 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 11 A DG 11 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 11 A DG 11 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 12 A DA 12 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 12 A DA 12 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DC 13 A DC 13 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 DC 13 A DC 13 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 DC 13 A DC 13 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 14 A DG 14 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 14 A DG 14 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 14 A DG 14 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog30 A N1 DA 15 A DA 15 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog31 A N6 DA 15 A DA 15 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N1 DA 15 A DA 15 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N6 DA 15 A DA 15 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N3 DC 16 A DC 16 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N4 DC 16 A DC 16 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O2 DC 16 A DC 16 1_555 C N2 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N1 DA 17 A DA 17 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N6 DA 17 A DA 17 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N1 DA 18 A DA 18 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N6 DA 18 A DA 18 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 DT 19 A DT 19 1_555 C N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O4 DT 19 A DT 19 1_555 C N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N3 DT 20 A DT 20 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O4 DT 20 A DT 20 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N1 DA 21 A DA 21 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N6 DA 21 A DA 21 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H15 N5' _chem_comp.formula_weight 277.324 _chem_comp.id DAP _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DAP sing 49 n y N1 C8 DAP sing 50 n y N1 HN1 DAP sing 51 n n C2 C3 DAP doub 52 n y C2 C1' DAP sing 53 n y C3 C9 DAP sing 54 n y C3 H3 DAP sing 55 n n C4 C5 DAP doub 56 n y C4 C9 DAP sing 57 n y C4 H4 DAP sing 58 n n C5 C6 DAP sing 59 n y C5 H5 DAP sing 60 n n C6 C7 DAP doub 61 n y C6 C10 DAP sing 62 n n C7 C8 DAP sing 63 n y C7 H7 DAP sing 64 n n C8 C9 DAP doub 65 n y C10 N2 DAP doub 66 n n C10 N3 DAP sing 67 n n N2 HN2 DAP sing 68 n n N3 HN31 DAP sing 69 n n N3 HN32 DAP sing 70 n n C1' C2' DAP doub 71 n y C1' C6' DAP sing 72 n y C2' C3' DAP sing 73 n y C2' H2' DAP sing 74 n n C3' C4' DAP doub 75 n y C3' H3' DAP sing 76 n n C4' C5' DAP sing 77 n y C4' C11 DAP sing 78 n n C5' C6' DAP doub 79 n y C5' H5' DAP sing 80 n n C6' H6' DAP sing 81 n n C11 N4 DAP doub 82 n n C11 N5 DAP sing 83 n n N4 HN4 DAP sing 84 n n N5 HN51 DAP sing 85 n n N5 HN52 DAP sing 86 n n # _atom_sites.entry_id 8T7X _atom_sites.fract_transf_matrix[1][1] 0.014603 _atom_sites.fract_transf_matrix[1][2] 0.008431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DAP A 1 101 101 DAP DAP . F 6 CAC C 1 101 1 CAC AS . G 5 DAP D 1 101 101 DAP DAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DAP . . . E 5 -8.131 17.599 -4.728 1 110.31 ? N1 DAP 101 A 1 HETATM 2 C C2 DAP . . . E 5 -9.382 17.611 -5.341 1 105.52 ? C2 DAP 101 A 1 HETATM 3 C C3 DAP . . . E 5 -9.162 17.415 -6.688 1 105.63 ? C3 DAP 101 A 1 HETATM 4 C C4 DAP . . . E 5 -7.028 16.967 -8.077 1 99.69 ? C4 DAP 101 A 1 HETATM 5 C C5 DAP . . . E 5 -5.669 16.81 -8.013 1 104.1 ? C5 DAP 101 A 1 HETATM 6 C C6 DAP . . . E 5 -4.984 16.906 -6.766 1 95.87 ? C6 DAP 101 A 1 HETATM 7 C C7 DAP . . . E 5 -5.709 17.166 -5.616 1 100.37 ? C7 DAP 101 A 1 HETATM 8 C C8 DAP . . . E 5 -7.141 17.328 -5.695 1 105.91 ? C8 DAP 101 A 1 HETATM 9 C C9 DAP . . . E 5 -7.783 17.227 -6.895 1 98.91 ? C9 DAP 101 A 1 HETATM 10 C C10 DAP . . . E 5 -3.441 16.712 -6.821 1 95.6 ? C10 DAP 101 A 1 HETATM 11 N N2 DAP . . . E 5 -2.654 16.945 -8.104 1 95.94 ? N2 DAP 101 A 1 HETATM 12 N N3 DAP . . . E 5 -2.846 16.342 -5.768 1 103.96 ? N3 DAP 101 A 1 HETATM 13 C C1' DAP . . . E 5 -10.557 17.913 -4.671 1 106.21 ? C1' DAP 101 A 1 HETATM 14 C C2' DAP . . . E 5 -11.814 17.954 -5.324 1 106.19 ? C2' DAP 101 A 1 HETATM 15 C C3' DAP . . . E 5 -12.946 18.322 -4.616 1 119.37 ? C3' DAP 101 A 1 HETATM 16 C C4' DAP . . . E 5 -12.853 18.68 -3.239 1 119.18 ? C4' DAP 101 A 1 HETATM 17 C C5' DAP . . . E 5 -11.59 18.665 -2.612 1 111.83 ? C5' DAP 101 A 1 HETATM 18 C C6' DAP . . . E 5 -10.471 18.303 -3.324 1 109.19 ? C6' DAP 101 A 1 HETATM 19 C C11 DAP . . . E 5 -14.079 19.146 -2.367 1 118.88 ? C11 DAP 101 A 1 HETATM 20 N N4 DAP . . . E 5 -14.467 18.478 -1.092 1 120.99 ? N4 DAP 101 A 1 HETATM 21 N N5 DAP . . . E 5 -14.762 20.187 -2.705 1 130.65 ? N5 DAP 101 A 1 HETATM 22 H HN1 DAP . . . E 5 -7.96 17.76 -3.735 1 132.64 ? HN1 DAP 101 A 1 HETATM 23 H H3 DAP . . . E 5 -9.945 17.407 -7.48 1 127.02 ? H3 DAP 101 A 1 HETATM 24 H H4 DAP . . . E 5 -7.535 16.894 -9.037 1 119.89 ? H4 DAP 101 A 1 HETATM 25 H H5 DAP . . . E 5 -5.143 16.621 -8.867 1 125.18 ? H5 DAP 101 A 1 HETATM 26 H H7 DAP . . . E 5 -5.195 17.248 -4.644 1 120.71 ? H7 DAP 101 A 1 HETATM 27 H HN2 DAP . . . E 5 -3.131 17.264 -8.962 1 115.39 ? HN2 DAP 101 A 1 HETATM 28 H HN31 DAP . . . E 5 -3.398 16.176 -4.893 1 125.01 ? HN31 DAP 101 A 1 HETATM 29 H HN32 DAP . . . E 5 -1.594 16.816 -8.122 1 115.39 ? HN32 DAP 101 A 1 HETATM 30 H H2' DAP . . . E 5 -11.889 17.7 -6.374 1 127.69 ? H2' DAP 101 A 1 HETATM 31 H H3' DAP . . . E 5 -13.964 18.337 -5.142 1 143.5 ? H3' DAP 101 A 1 HETATM 32 H H5' DAP . . . E 5 -11.506 18.919 -1.642 1 134.46 ? H5' DAP 101 A 1 HETATM 33 H H6' DAP . . . E 5 -9.481 18.318 -2.828 1 131.28 ? H6' DAP 101 A 1 HETATM 34 H HN4 DAP . . . E 5 -13.962 17.705 -0.792 1 145.44 ? HN4 DAP 101 A 1 HETATM 35 H HN51 DAP . . . E 5 -14.552 20.675 -3.522 1 157.04 ? HN51 DAP 101 A 1 HETATM 36 H HN52 DAP . . . E 5 -15.226 18.804 -0.569 1 145.44 ? HN52 DAP 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #