data_8T7X # _model_server_result.job_id c-dkKl-TGV96SDwMQrCEBA _model_server_result.datetime_utc '2024-10-12 02:17:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 8T7X # _exptl.entry_id 8T7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.324 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T7X _cell.length_a 68.479 _cell.length_b 68.479 _cell.length_c 60.082 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 3 1_555 D N3 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 3 1_555 D O2 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 3 1_555 D N4 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 4 A DA 4 1_555 D N3 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 4 A DA 4 1_555 D O4 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog6 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 6 A DT 6 1_555 D N1 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 6 A DT 6 1_555 D N6 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 7 A DT 7 1_555 D N1 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 7 A DT 7 1_555 D N6 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 8 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 8 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 8 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 10 A DT 10 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 10 A DT 10 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 11 A DG 11 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 11 A DG 11 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 11 A DG 11 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 12 A DA 12 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 12 A DA 12 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DC 13 A DC 13 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 DC 13 A DC 13 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 DC 13 A DC 13 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 14 A DG 14 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 14 A DG 14 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 14 A DG 14 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog30 A N1 DA 15 A DA 15 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog31 A N6 DA 15 A DA 15 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N1 DA 15 A DA 15 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N6 DA 15 A DA 15 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N3 DC 16 A DC 16 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N4 DC 16 A DC 16 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O2 DC 16 A DC 16 1_555 C N2 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N1 DA 17 A DA 17 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N6 DA 17 A DA 17 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N1 DA 18 A DA 18 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N6 DA 18 A DA 18 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 DT 19 A DT 19 1_555 C N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O4 DT 19 A DT 19 1_555 C N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N3 DT 20 A DT 20 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O4 DT 20 A DT 20 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N1 DA 21 A DA 21 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N6 DA 21 A DA 21 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H15 N5' _chem_comp.formula_weight 277.324 _chem_comp.id DAP _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DAP sing 49 n y N1 C8 DAP sing 50 n y N1 HN1 DAP sing 51 n n C2 C3 DAP doub 52 n y C2 C1' DAP sing 53 n y C3 C9 DAP sing 54 n y C3 H3 DAP sing 55 n n C4 C5 DAP doub 56 n y C4 C9 DAP sing 57 n y C4 H4 DAP sing 58 n n C5 C6 DAP sing 59 n y C5 H5 DAP sing 60 n n C6 C7 DAP doub 61 n y C6 C10 DAP sing 62 n n C7 C8 DAP sing 63 n y C7 H7 DAP sing 64 n n C8 C9 DAP doub 65 n y C10 N2 DAP doub 66 n n C10 N3 DAP sing 67 n n N2 HN2 DAP sing 68 n n N3 HN31 DAP sing 69 n n N3 HN32 DAP sing 70 n n C1' C2' DAP doub 71 n y C1' C6' DAP sing 72 n y C2' C3' DAP sing 73 n y C2' H2' DAP sing 74 n n C3' C4' DAP doub 75 n y C3' H3' DAP sing 76 n n C4' C5' DAP sing 77 n y C4' C11 DAP sing 78 n n C5' C6' DAP doub 79 n y C5' H5' DAP sing 80 n n C6' H6' DAP sing 81 n n C11 N4 DAP doub 82 n n C11 N5 DAP sing 83 n n N4 HN4 DAP sing 84 n n N5 HN51 DAP sing 85 n n N5 HN52 DAP sing 86 n n # _atom_sites.entry_id 8T7X _atom_sites.fract_transf_matrix[1][1] 0.014603 _atom_sites.fract_transf_matrix[1][2] 0.008431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DAP A 1 101 101 DAP DAP . F 6 CAC C 1 101 1 CAC AS . G 5 DAP D 1 101 101 DAP DAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DAP . . . G 5 17.356 -15.095 -3.586 1 130.54 ? N1 DAP 101 D 1 HETATM 2 C C2 DAP . . . G 5 18.614 -14.59 -3.845 1 129.07 ? C2 DAP 101 D 1 HETATM 3 C C3 DAP . . . G 5 18.496 -13.724 -4.903 1 125.28 ? C3 DAP 101 D 1 HETATM 4 C C4 DAP . . . G 5 16.455 -12.993 -6.352 1 122.51 ? C4 DAP 101 D 1 HETATM 5 C C5 DAP . . . G 5 15.11 -13.16 -6.536 1 119.42 ? C5 DAP 101 D 1 HETATM 6 C C6 DAP . . . G 5 14.373 -14.045 -5.69 1 124.24 ? C6 DAP 101 D 1 HETATM 7 C C7 DAP . . . G 5 15.038 -14.722 -4.689 1 125.76 ? C7 DAP 101 D 1 HETATM 8 C C8 DAP . . . G 5 16.452 -14.547 -4.5 1 129.4 ? C8 DAP 101 D 1 HETATM 9 C C9 DAP . . . G 5 17.149 -13.703 -5.31 1 126.93 ? C9 DAP 101 D 1 HETATM 10 C C10 DAP . . . G 5 12.844 -14.212 -5.941 1 124.49 ? C10 DAP 101 D 1 HETATM 11 N N2 DAP . . . G 5 12.378 -14.895 -7.191 1 125.6 ? N2 DAP 101 D 1 HETATM 12 N N3 DAP . . . G 5 11.975 -13.793 -5.122 1 121.78 ? N3 DAP 101 D 1 HETATM 13 C C1' DAP . . . G 5 19.728 -14.92 -3.095 1 128.92 ? C1' DAP 101 D 1 HETATM 14 C C2' DAP . . . G 5 20.864 -14.084 -3.108 1 128.59 ? C2' DAP 101 D 1 HETATM 15 C C3' DAP . . . G 5 21.96 -14.396 -2.352 1 129.83 ? C3' DAP 101 D 1 HETATM 16 C C4' DAP . . . G 5 21.955 -15.548 -1.544 1 133 ? C4' DAP 101 D 1 HETATM 17 C C5' DAP . . . G 5 20.822 -16.372 -1.522 1 130.41 ? C5' DAP 101 D 1 HETATM 18 C C6' DAP . . . G 5 19.726 -16.058 -2.283 1 132.47 ? C6' DAP 101 D 1 HETATM 19 C C11 DAP . . . G 5 23.189 -15.924 -0.665 1 137.89 ? C11 DAP 101 D 1 HETATM 20 N N4 DAP . . . G 5 23 -16.726 0.587 1 122.7 ? N4 DAP 101 D 1 HETATM 21 N N5 DAP . . . G 5 24.362 -15.538 -1.018 1 145.97 ? N5 DAP 101 D 1 HETATM 22 H HN1 DAP . . . G 5 17.126 -15.76 -2.847 1 156.9 ? HN1 DAP 101 D 1 HETATM 23 H H3 DAP . . . G 5 19.325 -13.138 -5.361 1 150.6 ? H3 DAP 101 D 1 HETATM 24 H H4 DAP . . . G 5 17.006 -12.315 -7.001 1 147.27 ? H4 DAP 101 D 1 HETATM 25 H H5 DAP . . . G 5 14.632 -12.651 -7.281 1 143.56 ? H5 DAP 101 D 1 HETATM 26 H H7 DAP . . . G 5 14.481 -15.404 -4.026 1 151.17 ? H7 DAP 101 D 1 HETATM 27 H HN2 DAP . . . G 5 13.069 -15.246 -7.872 1 150.98 ? HN2 DAP 101 D 1 HETATM 28 H HN31 DAP . . . G 5 12.269 -13.314 -4.24 1 146.4 ? HN31 DAP 101 D 1 HETATM 29 H HN32 DAP . . . G 5 11.335 -15.02 -7.377 1 150.98 ? HN32 DAP 101 D 1 HETATM 30 H H2' DAP . . . G 5 20.869 -13.191 -3.72 1 154.56 ? H2' DAP 101 D 1 HETATM 31 H H3' DAP . . . G 5 22.883 -13.717 -2.378 1 156.06 ? H3' DAP 101 D 1 HETATM 32 H H5' DAP . . . G 5 20.811 -17.197 -0.946 1 156.75 ? H5' DAP 101 D 1 HETATM 33 H H6' DAP . . . G 5 18.83 -16.709 -2.257 1 159.23 ? H6' DAP 101 D 1 HETATM 34 H HN4 DAP . . . G 5 23.777 -16.962 1.141 1 147.5 ? HN4 DAP 101 D 1 HETATM 35 H HN51 DAP . . . G 5 25.139 -15.767 -0.475 1 175.43 ? HN51 DAP 101 D 1 HETATM 36 H HN52 DAP . . . G 5 22.107 -17.017 0.852 1 147.5 ? HN52 DAP 101 D 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #