data_8T82 # _model_server_result.job_id HsoA8X4yiONWIQpDf9H16g _model_server_result.datetime_utc '2025-01-26 11:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8T82 # _exptl.entry_id 8T82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.031 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pentafluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.4 _cell.angle_gamma 90 _cell.entry_id 8T82 _cell.length_a 9.56 _cell.length_b 18.57 _cell.length_c 20.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall '-P 2ybc' _symmetry.space_group_name_H-M 'P 1 21/c 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 A,B,C 1 5 A,B,C 1 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 9.56 0 0 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -9.56 0 0 4 'crystal symmetry operation' 3_566 -x,-y+1,-z+1 -1 0 0 0 -1 0 0 0 -1 -3.042909 18.57 20.606543 5 'crystal symmetry operation' 3_666 -x+1,-y+1,-z+1 -1 0 0 0 -1 0 0 0 -1 6.517091 18.57 20.606543 6 'crystal symmetry operation' 3_466 -x-1,-y+1,-z+1 -1 0 0 0 -1 0 0 0 -1 -12.602909 18.57 20.606543 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H F5 O2' _chem_comp.formula_weight 164.031 _chem_comp.id YWK _chem_comp.mon_nstd_flag . _chem_comp.name 'pentafluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F04 C02 YWK sing 49 n n F02 C01 YWK sing 50 n n F03 C02 YWK sing 51 n n C02 C01 YWK sing 52 n n C02 F05 YWK sing 53 n n F01 C01 YWK sing 54 n n C01 C03 YWK sing 55 n n C03 O02 YWK doub 56 n n C03 O01 YWK sing 57 n n O01 H1 YWK sing 58 n n # _atom_sites.entry_id 8T82 _atom_sites.fract_transf_matrix[1][1] 0.104603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.015446 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.05385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.048528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YWK A 1 101 101 YWK LIG . C 3 HOH A 1 201 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YWK . . . B 2 1.902 12.488 -0.527 1 9.38 ? C01 YWK 101 A 1 HETATM 2 C C02 YWK . . . B 2 1.371 11.063 -0.679 1 10.63 ? C02 YWK 101 A 1 HETATM 3 C C03 YWK . . . B 2 1.502 13.153 0.782 1 8.34 ? C03 YWK 101 A 1 HETATM 4 F F01 YWK . . . B 2 3.263 12.475 -0.657 1 10.08 ? F01 YWK 101 A 1 HETATM 5 F F02 YWK . . . B 2 1.408 13.223 -1.562 1 9.11 ? F02 YWK 101 A 1 HETATM 6 F F03 YWK . . . B 2 0.016 11.028 -0.796 1 10.72 ? F03 YWK 101 A 1 HETATM 7 F F04 YWK . . . B 2 1.924 10.511 -1.787 1 11.21 ? F04 YWK 101 A 1 HETATM 8 F F05 YWK . . . B 2 1.75 10.293 0.366 1 11.53 ? F05 YWK 101 A 1 HETATM 9 O O01 YWK . . . B 2 2.333 13.912 1.375 1 8.94 -1 O01 YWK 101 A 1 HETATM 10 O O02 YWK . . . B 2 0.328 12.953 1.19 1 8.17 ? O02 YWK 101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #