data_8T8X # _model_server_result.job_id D_ZckbR0lhQrcRHjv-pHZA _model_server_result.datetime_utc '2024-11-13 14:40:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8T8X # _exptl.entry_id 8T8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T8X _cell.length_a 63.489 _cell.length_b 103.417 _cell.length_c 102.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 160 A ALA 176 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OD2 ASP 203 A ASP 219 1_555 F CD CD . A CD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 A OD2 ASP 215 A ASP 231 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A OD1 ASP 215 A ASP 231 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 A OD2 ASP 215 A ASP 231 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 B O2A ANP . A ANP 401 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc7 C CD CD . A CD 402 1_555 J O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc8 D CD CD . A CD 403 1_555 J O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc9 G CD CD . A CD 406 1_555 H O3 PO4 . A PO4 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 G CD CD . A CD 406 1_555 I O4 PO4 . A PO4 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 G CD CD . A CD 406 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8T8X _atom_sites.fract_transf_matrix[1][1] 0.015751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 CD A 1 402 501 CD CD . D 3 CD A 1 403 502 CD CD . E 3 CD A 1 404 503 CD CD . F 3 CD A 1 405 504 CD CD . G 3 CD A 1 406 505 CD CD . H 4 PO4 A 1 407 701 PO4 PO4 . I 4 PO4 A 1 408 702 PO4 PO4 . J 5 HOH A 1 501 70 HOH HOH . J 5 HOH A 2 502 40 HOH HOH . J 5 HOH A 3 503 34 HOH HOH . J 5 HOH A 4 504 51 HOH HOH . J 5 HOH A 5 505 71 HOH HOH . J 5 HOH A 6 506 69 HOH HOH . J 5 HOH A 7 507 52 HOH HOH . J 5 HOH A 8 508 24 HOH HOH . J 5 HOH A 9 509 72 HOH HOH . J 5 HOH A 10 510 27 HOH HOH . J 5 HOH A 11 511 32 HOH HOH . J 5 HOH A 12 512 30 HOH HOH . J 5 HOH A 13 513 50 HOH HOH . J 5 HOH A 14 514 14 HOH HOH . J 5 HOH A 15 515 13 HOH HOH . J 5 HOH A 16 516 12 HOH HOH . J 5 HOH A 17 517 26 HOH HOH . J 5 HOH A 18 518 8 HOH HOH . J 5 HOH A 19 519 1 HOH HOH . J 5 HOH A 20 520 25 HOH HOH . J 5 HOH A 21 521 20 HOH HOH . J 5 HOH A 22 522 29 HOH HOH . J 5 HOH A 23 523 38 HOH HOH . J 5 HOH A 24 524 23 HOH HOH . J 5 HOH A 25 525 3 HOH HOH . J 5 HOH A 26 526 21 HOH HOH . J 5 HOH A 27 527 55 HOH HOH . J 5 HOH A 28 528 10 HOH HOH . J 5 HOH A 29 529 73 HOH HOH . J 5 HOH A 30 530 44 HOH HOH . J 5 HOH A 31 531 45 HOH HOH . J 5 HOH A 32 532 4 HOH HOH . J 5 HOH A 33 533 36 HOH HOH . J 5 HOH A 34 534 28 HOH HOH . J 5 HOH A 35 535 47 HOH HOH . J 5 HOH A 36 536 7 HOH HOH . J 5 HOH A 37 537 2 HOH HOH . J 5 HOH A 38 538 11 HOH HOH . J 5 HOH A 39 539 5 HOH HOH . J 5 HOH A 40 540 22 HOH HOH . J 5 HOH A 41 541 42 HOH HOH . J 5 HOH A 42 542 16 HOH HOH . J 5 HOH A 43 543 6 HOH HOH . J 5 HOH A 44 544 9 HOH HOH . J 5 HOH A 45 545 19 HOH HOH . J 5 HOH A 46 546 15 HOH HOH . J 5 HOH A 47 547 37 HOH HOH . J 5 HOH A 48 548 59 HOH HOH . J 5 HOH A 49 549 54 HOH HOH . J 5 HOH A 50 550 18 HOH HOH . J 5 HOH A 51 551 56 HOH HOH . J 5 HOH A 52 552 66 HOH HOH . J 5 HOH A 53 553 17 HOH HOH . J 5 HOH A 54 554 60 HOH HOH . J 5 HOH A 55 555 46 HOH HOH . J 5 HOH A 56 556 53 HOH HOH . J 5 HOH A 57 557 68 HOH HOH . J 5 HOH A 58 558 31 HOH HOH . J 5 HOH A 59 559 43 HOH HOH . J 5 HOH A 60 560 63 HOH HOH . J 5 HOH A 61 561 58 HOH HOH . J 5 HOH A 62 562 48 HOH HOH . J 5 HOH A 63 563 39 HOH HOH . J 5 HOH A 64 564 65 HOH HOH . J 5 HOH A 65 565 41 HOH HOH . J 5 HOH A 66 566 35 HOH HOH . J 5 HOH A 67 567 57 HOH HOH . J 5 HOH A 68 568 33 HOH HOH . J 5 HOH A 69 569 64 HOH HOH . J 5 HOH A 70 570 62 HOH HOH . J 5 HOH A 71 571 49 HOH HOH . J 5 HOH A 72 572 61 HOH HOH . J 5 HOH A 73 573 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -18.425 -21.728 -0.863 1 76.3 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 -18.2 -22.573 -2.094 1 62.75 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 -18.902 -22.702 0.192 1 78.01 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 -17.093 -21.139 -0.38 1 69.32 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 -19.708 -19.011 -0.867 1 49.11 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 -18.306 -18.492 -0.723 1 47.39 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 -20.696 -18.827 0.25 1 53.63 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 -19.618 -20.621 -1.188 1 63.48 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 -21.76 -17.75 -2.799 1 51.07 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 -21.594 -16.369 -3.336 1 57.22 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 -22.075 -18.833 -3.778 1 58.44 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 -20.368 -18.122 -2.046 1 52.39 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 -22.924 -17.728 -1.693 1 50.01 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 -23.696 -18.933 -1.441 1 48 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 -25.184 -18.669 -1.517 1 46.99 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 -25.5 -17.287 -1.207 1 43.5 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 -25.843 -18.932 -2.877 1 45.97 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 -26.096 -20.33 -3.003 1 45.41 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 -27.105 -18.065 -2.774 1 45.16 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 -28.176 -18.697 -2.097 1 42.83 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 -26.609 -16.856 -1.974 1 42.22 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 -26.183 -15.673 -2.77 1 40.28 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 -24.884 -15.298 -3.15 1 41.46 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 -24.848 -14.16 -3.809 1 35.89 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 -26.178 -13.761 -3.862 1 34.6 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 -26.789 -12.631 -4.424 1 32.91 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 -26.103 -11.663 -5.021 1 33.46 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 -28.138 -12.522 -4.299 1 34.35 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 -28.812 -13.488 -3.649 1 34.88 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 -28.345 -14.601 -3.085 1 35.54 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 -27.005 -14.675 -3.228 1 36.19 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #