data_8T8X # _model_server_result.job_id hGEPMdTwVwYi0oC-JEbrOg _model_server_result.datetime_utc '2024-11-27 21:00:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8T8X # _exptl.entry_id 8T8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T8X _cell.length_a 63.489 _cell.length_b 103.417 _cell.length_c 102.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 160 A ALA 176 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OD2 ASP 203 A ASP 219 1_555 F CD CD . A CD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 A OD2 ASP 215 A ASP 231 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A OD1 ASP 215 A ASP 231 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 A OD2 ASP 215 A ASP 231 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 B O2A ANP . A ANP 401 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc7 C CD CD . A CD 402 1_555 J O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc8 D CD CD . A CD 403 1_555 J O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc9 G CD CD . A CD 406 1_555 H O3 PO4 . A PO4 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 G CD CD . A CD 406 1_555 I O4 PO4 . A PO4 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 G CD CD . A CD 406 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8T8X _atom_sites.fract_transf_matrix[1][1] 0.015751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 CD A 1 402 501 CD CD . D 3 CD A 1 403 502 CD CD . E 3 CD A 1 404 503 CD CD . F 3 CD A 1 405 504 CD CD . G 3 CD A 1 406 505 CD CD . H 4 PO4 A 1 407 701 PO4 PO4 . I 4 PO4 A 1 408 702 PO4 PO4 . J 5 HOH A 1 501 70 HOH HOH . J 5 HOH A 2 502 40 HOH HOH . J 5 HOH A 3 503 34 HOH HOH . J 5 HOH A 4 504 51 HOH HOH . J 5 HOH A 5 505 71 HOH HOH . J 5 HOH A 6 506 69 HOH HOH . J 5 HOH A 7 507 52 HOH HOH . J 5 HOH A 8 508 24 HOH HOH . J 5 HOH A 9 509 72 HOH HOH . J 5 HOH A 10 510 27 HOH HOH . J 5 HOH A 11 511 32 HOH HOH . J 5 HOH A 12 512 30 HOH HOH . J 5 HOH A 13 513 50 HOH HOH . J 5 HOH A 14 514 14 HOH HOH . J 5 HOH A 15 515 13 HOH HOH . J 5 HOH A 16 516 12 HOH HOH . J 5 HOH A 17 517 26 HOH HOH . J 5 HOH A 18 518 8 HOH HOH . J 5 HOH A 19 519 1 HOH HOH . J 5 HOH A 20 520 25 HOH HOH . J 5 HOH A 21 521 20 HOH HOH . J 5 HOH A 22 522 29 HOH HOH . J 5 HOH A 23 523 38 HOH HOH . J 5 HOH A 24 524 23 HOH HOH . J 5 HOH A 25 525 3 HOH HOH . J 5 HOH A 26 526 21 HOH HOH . J 5 HOH A 27 527 55 HOH HOH . J 5 HOH A 28 528 10 HOH HOH . J 5 HOH A 29 529 73 HOH HOH . J 5 HOH A 30 530 44 HOH HOH . J 5 HOH A 31 531 45 HOH HOH . J 5 HOH A 32 532 4 HOH HOH . J 5 HOH A 33 533 36 HOH HOH . J 5 HOH A 34 534 28 HOH HOH . J 5 HOH A 35 535 47 HOH HOH . J 5 HOH A 36 536 7 HOH HOH . J 5 HOH A 37 537 2 HOH HOH . J 5 HOH A 38 538 11 HOH HOH . J 5 HOH A 39 539 5 HOH HOH . J 5 HOH A 40 540 22 HOH HOH . J 5 HOH A 41 541 42 HOH HOH . J 5 HOH A 42 542 16 HOH HOH . J 5 HOH A 43 543 6 HOH HOH . J 5 HOH A 44 544 9 HOH HOH . J 5 HOH A 45 545 19 HOH HOH . J 5 HOH A 46 546 15 HOH HOH . J 5 HOH A 47 547 37 HOH HOH . J 5 HOH A 48 548 59 HOH HOH . J 5 HOH A 49 549 54 HOH HOH . J 5 HOH A 50 550 18 HOH HOH . J 5 HOH A 51 551 56 HOH HOH . J 5 HOH A 52 552 66 HOH HOH . J 5 HOH A 53 553 17 HOH HOH . J 5 HOH A 54 554 60 HOH HOH . J 5 HOH A 55 555 46 HOH HOH . J 5 HOH A 56 556 53 HOH HOH . J 5 HOH A 57 557 68 HOH HOH . J 5 HOH A 58 558 31 HOH HOH . J 5 HOH A 59 559 43 HOH HOH . J 5 HOH A 60 560 63 HOH HOH . J 5 HOH A 61 561 58 HOH HOH . J 5 HOH A 62 562 48 HOH HOH . J 5 HOH A 63 563 39 HOH HOH . J 5 HOH A 64 564 65 HOH HOH . J 5 HOH A 65 565 41 HOH HOH . J 5 HOH A 66 566 35 HOH HOH . J 5 HOH A 67 567 57 HOH HOH . J 5 HOH A 68 568 33 HOH HOH . J 5 HOH A 69 569 64 HOH HOH . J 5 HOH A 70 570 62 HOH HOH . J 5 HOH A 71 571 49 HOH HOH . J 5 HOH A 72 572 61 HOH HOH . J 5 HOH A 73 573 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -44.083 _atom_site.Cartn_y -12.169 _atom_site.Cartn_z -8.755 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 93.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #