data_8T8Y
#
_model_server_result.job_id            JG2A1LyZrBX9HpFzsM8_9w 
_model_server_result.datetime_utc      '2024-11-13 13:24:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8T8Y 
#
_exptl.entry_id    8T8Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T8Y 
_cell.length_a            64.619 
_cell.length_b            100.61 
_cell.length_c            105.022 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc4 C MG MG . A MG 402 1_555 E O41 I3P . A I3P 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc7 D MG MG . A MG 403 1_555 E O12 I3P . A I3P 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 D MG MG . A MG 403 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc12 D MG MG . A MG 403 1_555 F O HOH . A HOH 614 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8T8Y 
_atom_sites.fract_transf_matrix[1][1]    0.015475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009939 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009522 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 MG A 1 402 501 MG MG . 
D 3 MG A 1 403 503 MG MG . 
E 4 I3P A 1 404 601 I3P I3P . 
F 5 HOH A 1 501 16 HOH HOH . 
F 5 HOH A 2 502 35 HOH HOH . 
F 5 HOH A 3 503 50 HOH HOH . 
F 5 HOH A 4 504 60 HOH HOH . 
F 5 HOH A 5 505 107 HOH HOH . 
F 5 HOH A 6 506 25 HOH HOH . 
F 5 HOH A 7 507 77 HOH HOH . 
F 5 HOH A 8 508 37 HOH HOH . 
F 5 HOH A 9 509 17 HOH HOH . 
F 5 HOH A 10 510 76 HOH HOH . 
F 5 HOH A 11 511 46 HOH HOH . 
F 5 HOH A 12 512 93 HOH HOH . 
F 5 HOH A 13 513 7 HOH HOH . 
F 5 HOH A 14 514 28 HOH HOH . 
F 5 HOH A 15 515 66 HOH HOH . 
F 5 HOH A 16 516 45 HOH HOH . 
F 5 HOH A 17 517 83 HOH HOH . 
F 5 HOH A 18 518 26 HOH HOH . 
F 5 HOH A 19 519 4 HOH HOH . 
F 5 HOH A 20 520 55 HOH HOH . 
F 5 HOH A 21 521 1 HOH HOH . 
F 5 HOH A 22 522 3 HOH HOH . 
F 5 HOH A 23 523 100 HOH HOH . 
F 5 HOH A 24 524 10 HOH HOH . 
F 5 HOH A 25 525 42 HOH HOH . 
F 5 HOH A 26 526 44 HOH HOH . 
F 5 HOH A 27 527 87 HOH HOH . 
F 5 HOH A 28 528 88 HOH HOH . 
F 5 HOH A 29 529 53 HOH HOH . 
F 5 HOH A 30 530 85 HOH HOH . 
F 5 HOH A 31 531 99 HOH HOH . 
F 5 HOH A 32 532 74 HOH HOH . 
F 5 HOH A 33 533 8 HOH HOH . 
F 5 HOH A 34 534 81 HOH HOH . 
F 5 HOH A 35 535 36 HOH HOH . 
F 5 HOH A 36 536 43 HOH HOH . 
F 5 HOH A 37 537 91 HOH HOH . 
F 5 HOH A 38 538 75 HOH HOH . 
F 5 HOH A 39 539 54 HOH HOH . 
F 5 HOH A 40 540 95 HOH HOH . 
F 5 HOH A 41 541 62 HOH HOH . 
F 5 HOH A 42 542 48 HOH HOH . 
F 5 HOH A 43 543 41 HOH HOH . 
F 5 HOH A 44 544 106 HOH HOH . 
F 5 HOH A 45 545 9 HOH HOH . 
F 5 HOH A 46 546 114 HOH HOH . 
F 5 HOH A 47 547 40 HOH HOH . 
F 5 HOH A 48 548 22 HOH HOH . 
F 5 HOH A 49 549 98 HOH HOH . 
F 5 HOH A 50 550 12 HOH HOH . 
F 5 HOH A 51 551 6 HOH HOH . 
F 5 HOH A 52 552 105 HOH HOH . 
F 5 HOH A 53 553 24 HOH HOH . 
F 5 HOH A 54 554 67 HOH HOH . 
F 5 HOH A 55 555 68 HOH HOH . 
F 5 HOH A 56 556 11 HOH HOH . 
F 5 HOH A 57 557 2 HOH HOH . 
F 5 HOH A 58 558 20 HOH HOH . 
F 5 HOH A 59 559 32 HOH HOH . 
F 5 HOH A 60 560 13 HOH HOH . 
F 5 HOH A 61 561 34 HOH HOH . 
F 5 HOH A 62 562 5 HOH HOH . 
F 5 HOH A 63 563 97 HOH HOH . 
F 5 HOH A 64 564 101 HOH HOH . 
F 5 HOH A 65 565 70 HOH HOH . 
F 5 HOH A 66 566 38 HOH HOH . 
F 5 HOH A 67 567 23 HOH HOH . 
F 5 HOH A 68 568 52 HOH HOH . 
F 5 HOH A 69 569 79 HOH HOH . 
F 5 HOH A 70 570 64 HOH HOH . 
F 5 HOH A 71 571 21 HOH HOH . 
F 5 HOH A 72 572 65 HOH HOH . 
F 5 HOH A 73 573 56 HOH HOH . 
F 5 HOH A 74 574 15 HOH HOH . 
F 5 HOH A 75 575 58 HOH HOH . 
F 5 HOH A 76 576 39 HOH HOH . 
F 5 HOH A 77 577 47 HOH HOH . 
F 5 HOH A 78 578 57 HOH HOH . 
F 5 HOH A 79 579 69 HOH HOH . 
F 5 HOH A 80 580 18 HOH HOH . 
F 5 HOH A 81 581 59 HOH HOH . 
F 5 HOH A 82 582 14 HOH HOH . 
F 5 HOH A 83 583 96 HOH HOH . 
F 5 HOH A 84 584 63 HOH HOH . 
F 5 HOH A 85 585 111 HOH HOH . 
F 5 HOH A 86 586 49 HOH HOH . 
F 5 HOH A 87 587 30 HOH HOH . 
F 5 HOH A 88 588 94 HOH HOH . 
F 5 HOH A 89 589 19 HOH HOH . 
F 5 HOH A 90 590 89 HOH HOH . 
F 5 HOH A 91 591 80 HOH HOH . 
F 5 HOH A 92 592 31 HOH HOH . 
F 5 HOH A 93 593 33 HOH HOH . 
F 5 HOH A 94 594 90 HOH HOH . 
F 5 HOH A 95 595 112 HOH HOH . 
F 5 HOH A 96 596 71 HOH HOH . 
F 5 HOH A 97 597 27 HOH HOH . 
F 5 HOH A 98 598 73 HOH HOH . 
F 5 HOH A 99 599 82 HOH HOH . 
F 5 HOH A 100 600 116 HOH HOH . 
F 5 HOH A 101 601 92 HOH HOH . 
F 5 HOH A 102 602 78 HOH HOH . 
F 5 HOH A 103 603 86 HOH HOH . 
F 5 HOH A 104 604 51 HOH HOH . 
F 5 HOH A 105 605 72 HOH HOH . 
F 5 HOH A 106 606 29 HOH HOH . 
F 5 HOH A 107 607 117 HOH HOH . 
F 5 HOH A 108 608 113 HOH HOH . 
F 5 HOH A 109 609 104 HOH HOH . 
F 5 HOH A 110 610 109 HOH HOH . 
F 5 HOH A 111 611 103 HOH HOH . 
F 5 HOH A 112 612 110 HOH HOH . 
F 5 HOH A 113 613 102 HOH HOH . 
F 5 HOH A 114 614 84 HOH HOH . 
F 5 HOH A 115 615 115 HOH HOH . 
F 5 HOH A 116 616 108 HOH HOH . 
F 5 HOH A 117 617 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -21.141 -19.109 -1.132 1 31.95 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -21.07 -20.289 -2.099 1 31.26 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -22.014 -19.381 0.056 1 30.12 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -19.789 -18.588 -0.753 1 30.43 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -22.739 -17.754 -3.266 1 29.58 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -22.647 -19.001 -4.09 1 27.33 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -22.343 -16.461 -3.896 1 30.92 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -21.858 -17.892 -1.932 1 30.62 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -24.219 -17.619 -2.658 1 27.69 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -24.821 -18.788 -2.059 1 27.68 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -26.324 -18.654 -2.061 1 28.48 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -26.702 -17.301 -1.704 1 28.14 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -27.022 -18.92 -3.396 1 29.31 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -27.277 -20.316 -3.497 1 29.36 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -28.288 -18.057 -3.297 1 29.08 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -29.37 -18.727 -2.686 1 29.84 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -27.836 -16.887 -2.425 1 27.07 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -27.445 -15.692 -3.157 1 27.11 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -26.161 -15.29 -3.442 1 26.75 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -26.1 -14.151 -4.082 1 26.43 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -27.427 -13.761 -4.201 1 26.89 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -28.023 -12.621 -4.769 1 26.72 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -27.336 -11.626 -5.323 1 27.92 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -29.371 -12.53 -4.702 1 27.8 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -30.057 -13.523 -4.116 1 28.21 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -29.605 -14.641 -3.555 1 27.15 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -28.265 -14.699 -3.629 1 26.83 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#