data_8T8Z # _model_server_result.job_id EBLR15oeArC6AEEtHIhPvg _model_server_result.datetime_utc '2025-01-18 14:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8T8Z # _exptl.entry_id 8T8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T8Z _cell.length_a 63.841 _cell.length_b 103.835 _cell.length_c 102.719 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 C MG MG . A MG 402 1_555 D O25 ZNU . A ZNU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8T8Z _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 4 ZNU A 1 403 601 ZNU 1P5 . E 5 HOH A 1 501 30 HOH HOH . E 5 HOH A 2 502 7 HOH HOH . E 5 HOH A 3 503 34 HOH HOH . E 5 HOH A 4 504 26 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 4 HOH HOH . E 5 HOH A 7 507 36 HOH HOH . E 5 HOH A 8 508 27 HOH HOH . E 5 HOH A 9 509 16 HOH HOH . E 5 HOH A 10 510 33 HOH HOH . E 5 HOH A 11 511 42 HOH HOH . E 5 HOH A 12 512 25 HOH HOH . E 5 HOH A 13 513 22 HOH HOH . E 5 HOH A 14 514 41 HOH HOH . E 5 HOH A 15 515 37 HOH HOH . E 5 HOH A 16 516 20 HOH HOH . E 5 HOH A 17 517 35 HOH HOH . E 5 HOH A 18 518 9 HOH HOH . E 5 HOH A 19 519 17 HOH HOH . E 5 HOH A 20 520 46 HOH HOH . E 5 HOH A 21 521 2 HOH HOH . E 5 HOH A 22 522 51 HOH HOH . E 5 HOH A 23 523 21 HOH HOH . E 5 HOH A 24 524 45 HOH HOH . E 5 HOH A 25 525 1 HOH HOH . E 5 HOH A 26 526 12 HOH HOH . E 5 HOH A 27 527 14 HOH HOH . E 5 HOH A 28 528 49 HOH HOH . E 5 HOH A 29 529 8 HOH HOH . E 5 HOH A 30 530 28 HOH HOH . E 5 HOH A 31 531 10 HOH HOH . E 5 HOH A 32 532 52 HOH HOH . E 5 HOH A 33 533 29 HOH HOH . E 5 HOH A 34 534 13 HOH HOH . E 5 HOH A 35 535 18 HOH HOH . E 5 HOH A 36 536 56 HOH HOH . E 5 HOH A 37 537 5 HOH HOH . E 5 HOH A 38 538 44 HOH HOH . E 5 HOH A 39 539 32 HOH HOH . E 5 HOH A 40 540 11 HOH HOH . E 5 HOH A 41 541 39 HOH HOH . E 5 HOH A 42 542 3 HOH HOH . E 5 HOH A 43 543 54 HOH HOH . E 5 HOH A 44 544 43 HOH HOH . E 5 HOH A 45 545 57 HOH HOH . E 5 HOH A 46 546 15 HOH HOH . E 5 HOH A 47 547 58 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 50 HOH HOH . E 5 HOH A 50 550 23 HOH HOH . E 5 HOH A 51 551 19 HOH HOH . E 5 HOH A 52 552 47 HOH HOH . E 5 HOH A 53 553 31 HOH HOH . E 5 HOH A 54 554 40 HOH HOH . E 5 HOH A 55 555 53 HOH HOH . E 5 HOH A 56 556 38 HOH HOH . E 5 HOH A 57 557 55 HOH HOH . E 5 HOH A 58 558 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -19.961 -18.985 -1.226 1 49.94 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -20.295 -20.302 -1.896 1 55.56 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -20.282 -18.991 0.244 1 50.75 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -18.536 -18.515 -1.554 1 48.11 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -22.033 -17.747 -3.051 1 50.98 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -21.997 -19.004 -3.875 1 54.17 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -21.728 -16.443 -3.709 1 53.94 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -21.018 -17.886 -1.804 1 54.67 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -23.451 -17.655 -2.306 1 46.54 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -24.027 -18.852 -1.728 1 43.14 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -25.526 -18.704 -1.661 1 43.05 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -25.865 -17.332 -1.337 1 42.41 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -26.283 -19.024 -2.952 1 42.52 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -26.636 -20.402 -2.917 1 40.15 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -27.488 -18.066 -2.913 1 43.64 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -28.66 -18.612 -2.338 1 38.07 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -26.984 -16.889 -2.072 1 41.42 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -26.594 -15.695 -2.825 1 42.95 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -25.326 -15.287 -3.188 1 45.32 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -25.294 -14.132 -3.811 1 43.75 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -26.629 -13.745 -3.864 1 44.04 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -27.269 -12.606 -4.404 1 42.33 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -26.627 -11.593 -4.985 1 43.22 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -28.615 -12.533 -4.278 1 38.9 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -29.264 -13.538 -3.673 1 41.08 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -28.775 -14.656 -3.138 1 43.11 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -27.436 -14.7 -3.261 1 42.91 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #