data_8T8Z # _model_server_result.job_id cKWa3XijKRN8VbQPZHEIXw _model_server_result.datetime_utc '2024-11-04 20:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8T8Z # _exptl.entry_id 8T8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2R,3S,4S,5S,6S)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T8Z _cell.length_a 63.841 _cell.length_b 103.835 _cell.length_c 102.719 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 C MG MG . A MG 402 1_555 D O25 ZNU . A ZNU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id ZNU _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2R,3S,4S,5S,6S)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms myo-(1OH)IP5 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 P3 ZNU doub 420 n n O23 P3 ZNU sing 421 n n O34 P4 ZNU doub 422 n n O43 P3 ZNU sing 423 n n P3 O13 ZNU sing 424 n n O25 P5 ZNU doub 425 n n P4 O44 ZNU sing 426 n n P4 O14 ZNU sing 427 n n P4 O24 ZNU sing 428 n n O45 P5 ZNU sing 429 n n O14 C4 ZNU sing 430 n n O13 C3 ZNU sing 431 n n P5 O15 ZNU sing 432 n n P5 O35 ZNU sing 433 n n O32 P2 ZNU doub 434 n n C3 C4 ZNU sing 435 n n C3 C2 ZNU sing 436 n n O15 C5 ZNU sing 437 n n C4 C5 ZNU sing 438 n n C5 C6 ZNU sing 439 n n O12 P2 ZNU sing 440 n n O12 C2 ZNU sing 441 n n P2 O22 ZNU sing 442 n n P2 O42 ZNU sing 443 n n C2 C1 ZNU sing 444 n n C1 C6 ZNU sing 445 n n C1 O11 ZNU sing 446 n n C6 O16 ZNU sing 447 n n O31 P1 ZNU doub 448 n n O11 P1 ZNU sing 449 n n P1 O41 ZNU sing 450 n n P1 O21 ZNU sing 451 n n C1 H1 ZNU sing 452 n n C2 H2 ZNU sing 453 n n C3 H3 ZNU sing 454 n n C4 H4 ZNU sing 455 n n C5 H5 ZNU sing 456 n n C6 H6 ZNU sing 457 n n O21 H7 ZNU sing 458 n n O41 H8 ZNU sing 459 n n O22 H9 ZNU sing 460 n n O42 H10 ZNU sing 461 n n O23 H11 ZNU sing 462 n n O43 H12 ZNU sing 463 n n O24 H13 ZNU sing 464 n n O44 H14 ZNU sing 465 n n O35 H15 ZNU sing 466 n n O45 H16 ZNU sing 467 n n O16 H17 ZNU sing 468 n n # _atom_sites.entry_id 8T8Z _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 4 ZNU A 1 403 601 ZNU 1P5 . E 5 HOH A 1 501 30 HOH HOH . E 5 HOH A 2 502 7 HOH HOH . E 5 HOH A 3 503 34 HOH HOH . E 5 HOH A 4 504 26 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 4 HOH HOH . E 5 HOH A 7 507 36 HOH HOH . E 5 HOH A 8 508 27 HOH HOH . E 5 HOH A 9 509 16 HOH HOH . E 5 HOH A 10 510 33 HOH HOH . E 5 HOH A 11 511 42 HOH HOH . E 5 HOH A 12 512 25 HOH HOH . E 5 HOH A 13 513 22 HOH HOH . E 5 HOH A 14 514 41 HOH HOH . E 5 HOH A 15 515 37 HOH HOH . E 5 HOH A 16 516 20 HOH HOH . E 5 HOH A 17 517 35 HOH HOH . E 5 HOH A 18 518 9 HOH HOH . E 5 HOH A 19 519 17 HOH HOH . E 5 HOH A 20 520 46 HOH HOH . E 5 HOH A 21 521 2 HOH HOH . E 5 HOH A 22 522 51 HOH HOH . E 5 HOH A 23 523 21 HOH HOH . E 5 HOH A 24 524 45 HOH HOH . E 5 HOH A 25 525 1 HOH HOH . E 5 HOH A 26 526 12 HOH HOH . E 5 HOH A 27 527 14 HOH HOH . E 5 HOH A 28 528 49 HOH HOH . E 5 HOH A 29 529 8 HOH HOH . E 5 HOH A 30 530 28 HOH HOH . E 5 HOH A 31 531 10 HOH HOH . E 5 HOH A 32 532 52 HOH HOH . E 5 HOH A 33 533 29 HOH HOH . E 5 HOH A 34 534 13 HOH HOH . E 5 HOH A 35 535 18 HOH HOH . E 5 HOH A 36 536 56 HOH HOH . E 5 HOH A 37 537 5 HOH HOH . E 5 HOH A 38 538 44 HOH HOH . E 5 HOH A 39 539 32 HOH HOH . E 5 HOH A 40 540 11 HOH HOH . E 5 HOH A 41 541 39 HOH HOH . E 5 HOH A 42 542 3 HOH HOH . E 5 HOH A 43 543 54 HOH HOH . E 5 HOH A 44 544 43 HOH HOH . E 5 HOH A 45 545 57 HOH HOH . E 5 HOH A 46 546 15 HOH HOH . E 5 HOH A 47 547 58 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 50 HOH HOH . E 5 HOH A 50 550 23 HOH HOH . E 5 HOH A 51 551 19 HOH HOH . E 5 HOH A 52 552 47 HOH HOH . E 5 HOH A 53 553 31 HOH HOH . E 5 HOH A 54 554 40 HOH HOH . E 5 HOH A 55 555 53 HOH HOH . E 5 HOH A 56 556 38 HOH HOH . E 5 HOH A 57 557 55 HOH HOH . E 5 HOH A 58 558 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZNU . . . D 4 -18.139 -26.784 0.401 1 78.14 ? C1 ZNU 403 A 1 HETATM 2 C C2 ZNU . . . D 4 -16.934 -27.327 -0.42 1 71.21 ? C2 ZNU 403 A 1 HETATM 3 C C3 ZNU . . . D 4 -16.749 -26.556 -1.703 1 64.17 ? C3 ZNU 403 A 1 HETATM 4 C C4 ZNU . . . D 4 -16.625 -25.053 -1.397 1 65.72 ? C4 ZNU 403 A 1 HETATM 5 C C5 ZNU . . . D 4 -17.954 -24.553 -0.804 1 66.38 ? C5 ZNU 403 A 1 HETATM 6 C C6 ZNU . . . D 4 -18.071 -25.211 0.594 1 74.09 ? C6 ZNU 403 A 1 HETATM 7 O O11 ZNU . . . D 4 -18.207 -27.471 1.681 1 77.57 ? O11 ZNU 403 A 1 HETATM 8 P P1 ZNU . . . D 4 -19.56 -28.297 1.992 1 90.96 ? P1 ZNU 403 A 1 HETATM 9 O O21 ZNU . . . D 4 -19.201 -29.317 3.267 1 84.58 ? O21 ZNU 403 A 1 HETATM 10 O O31 ZNU . . . D 4 -19.915 -29.216 0.699 1 70.82 ? O31 ZNU 403 A 1 HETATM 11 O O41 ZNU . . . D 4 -20.507 -27.213 2.419 1 73.29 ? O41 ZNU 403 A 1 HETATM 12 O O12 ZNU . . . D 4 -17.162 -28.697 -0.79 1 80.87 ? O12 ZNU 403 A 1 HETATM 13 P P2 ZNU . . . D 4 -16.075 -29.88 -0.603 1 88.16 ? P2 ZNU 403 A 1 HETATM 14 O O22 ZNU . . . D 4 -14.595 -29.274 -0.47 1 88.81 ? O22 ZNU 403 A 1 HETATM 15 O O32 ZNU . . . D 4 -16.249 -30.715 -1.782 1 75.96 ? O32 ZNU 403 A 1 HETATM 16 O O42 ZNU . . . D 4 -16.704 -30.467 0.777 1 88.74 ? O42 ZNU 403 A 1 HETATM 17 O O13 ZNU . . . D 4 -15.563 -27.06 -2.351 1 57.96 ? O13 ZNU 403 A 1 HETATM 18 P P3 ZNU . . . D 4 -15.539 -27.648 -3.879 1 59.19 ? P3 ZNU 403 A 1 HETATM 19 O O23 ZNU . . . D 4 -17.086 -27.783 -4.343 1 49.34 ? O23 ZNU 403 A 1 HETATM 20 O O33 ZNU . . . D 4 -14.896 -26.59 -4.685 1 61.29 ? O33 ZNU 403 A 1 HETATM 21 O O43 ZNU . . . D 4 -14.839 -29.12 -3.894 1 60.78 ? O43 ZNU 403 A 1 HETATM 22 O O14 ZNU . . . D 4 -16.333 -24.361 -2.6 1 70.82 ? O14 ZNU 403 A 1 HETATM 23 P P4 ZNU . . . D 4 -15.46 -22.998 -2.827 1 78.58 ? P4 ZNU 403 A 1 HETATM 24 O O24 ZNU . . . D 4 -14.393 -23.054 -1.582 1 67.37 ? O24 ZNU 403 A 1 HETATM 25 O O34 ZNU . . . D 4 -14.774 -23.298 -4.263 1 68.13 ? O34 ZNU 403 A 1 HETATM 26 O O44 ZNU . . . D 4 -16.369 -21.796 -2.726 1 82.95 ? O44 ZNU 403 A 1 HETATM 27 O O15 ZNU . . . D 4 -19.068 -24.918 -1.685 1 61.85 ? O15 ZNU 403 A 1 HETATM 28 P P5 ZNU . . . D 4 -20.125 -23.829 -2.239 1 75.17 ? P5 ZNU 403 A 1 HETATM 29 O O25 ZNU . . . D 4 -19.553 -22.921 -3.446 1 69.68 ? O25 ZNU 403 A 1 HETATM 30 O O35 ZNU . . . D 4 -20.255 -23.107 -0.992 1 79.61 ? O35 ZNU 403 A 1 HETATM 31 O O45 ZNU . . . D 4 -21.4 -24.74 -2.644 1 68.13 ? O45 ZNU 403 A 1 HETATM 32 O O16 ZNU . . . D 4 -19.17 -24.678 1.399 1 61.21 ? O16 ZNU 403 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #