data_8T90 # _model_server_result.job_id q4oIOV_mKRaLqU99EroJ7Q _model_server_result.datetime_utc '2025-02-17 15:12:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8T90 # _exptl.entry_id 8T90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2R,3R,4S,5R,6R)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T90 _cell.length_a 64.263 _cell.length_b 103.12 _cell.length_c 103.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id ZNZ _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2R,3R,4S,5R,6R)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms myo-(3OH)IP5 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 P1 ZNZ doub 420 n n O21 P1 ZNZ sing 421 n n P1 O41 ZNZ sing 422 n n P1 O11 ZNZ sing 423 n n O42 P2 ZNZ doub 424 n n O11 C1 ZNZ sing 425 n n O26 P6 ZNZ doub 426 n n P2 O12 ZNZ sing 427 n n P2 O22 ZNZ sing 428 n n P2 O32 ZNZ sing 429 n n O25 P5 ZNZ doub 430 n n O12 C2 ZNZ sing 431 n n C1 C2 ZNZ sing 432 n n C1 C6 ZNZ sing 433 n n O16 P6 ZNZ sing 434 n n O16 C6 ZNZ sing 435 n n P6 O36 ZNZ sing 436 n n P6 O46 ZNZ sing 437 n n C2 C3 ZNZ sing 438 n n C6 C5 ZNZ sing 439 n n O45 P5 ZNZ sing 440 n n P5 O15 ZNZ sing 441 n n P5 O35 ZNZ sing 442 n n O15 C5 ZNZ sing 443 n n C3 O13 ZNZ sing 444 n n C3 C4 ZNZ sing 445 n n C5 C4 ZNZ sing 446 n n O23 P3 ZNZ doub 447 n n O13 P3 ZNZ sing 448 n n C4 O14 ZNZ sing 449 n n O43 P3 ZNZ sing 450 n n P3 O33 ZNZ sing 451 n n O46 H1 ZNZ sing 452 n n O36 H2 ZNZ sing 453 n n C6 H3 ZNZ sing 454 n n C1 H4 ZNZ sing 455 n n O41 H5 ZNZ sing 456 n n O21 H6 ZNZ sing 457 n n C5 H7 ZNZ sing 458 n n O45 H8 ZNZ sing 459 n n O35 H9 ZNZ sing 460 n n C4 H10 ZNZ sing 461 n n O14 H11 ZNZ sing 462 n n C3 H12 ZNZ sing 463 n n O43 H13 ZNZ sing 464 n n O33 H14 ZNZ sing 465 n n C2 H15 ZNZ sing 466 n n O22 H16 ZNZ sing 467 n n O32 H17 ZNZ sing 468 n n # _atom_sites.entry_id 8T90 _atom_sites.fract_transf_matrix[1][1] 0.015561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 4 ZNZ A 1 403 601 ZNZ 3P5 . E 5 HOH A 1 501 88 HOH HOH . E 5 HOH A 2 502 80 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 35 HOH HOH . E 5 HOH A 5 505 79 HOH HOH . E 5 HOH A 6 506 1 HOH HOH . E 5 HOH A 7 507 12 HOH HOH . E 5 HOH A 8 508 46 HOH HOH . E 5 HOH A 9 509 102 HOH HOH . E 5 HOH A 10 510 77 HOH HOH . E 5 HOH A 11 511 36 HOH HOH . E 5 HOH A 12 512 65 HOH HOH . E 5 HOH A 13 513 24 HOH HOH . E 5 HOH A 14 514 48 HOH HOH . E 5 HOH A 15 515 9 HOH HOH . E 5 HOH A 16 516 61 HOH HOH . E 5 HOH A 17 517 42 HOH HOH . E 5 HOH A 18 518 30 HOH HOH . E 5 HOH A 19 519 99 HOH HOH . E 5 HOH A 20 520 86 HOH HOH . E 5 HOH A 21 521 57 HOH HOH . E 5 HOH A 22 522 51 HOH HOH . E 5 HOH A 23 523 16 HOH HOH . E 5 HOH A 24 524 4 HOH HOH . E 5 HOH A 25 525 81 HOH HOH . E 5 HOH A 26 526 44 HOH HOH . E 5 HOH A 27 527 68 HOH HOH . E 5 HOH A 28 528 5 HOH HOH . E 5 HOH A 29 529 10 HOH HOH . E 5 HOH A 30 530 31 HOH HOH . E 5 HOH A 31 531 26 HOH HOH . E 5 HOH A 32 532 8 HOH HOH . E 5 HOH A 33 533 28 HOH HOH . E 5 HOH A 34 534 6 HOH HOH . E 5 HOH A 35 535 33 HOH HOH . E 5 HOH A 36 536 13 HOH HOH . E 5 HOH A 37 537 98 HOH HOH . E 5 HOH A 38 538 78 HOH HOH . E 5 HOH A 39 539 34 HOH HOH . E 5 HOH A 40 540 87 HOH HOH . E 5 HOH A 41 541 90 HOH HOH . E 5 HOH A 42 542 55 HOH HOH . E 5 HOH A 43 543 32 HOH HOH . E 5 HOH A 44 544 73 HOH HOH . E 5 HOH A 45 545 104 HOH HOH . E 5 HOH A 46 546 27 HOH HOH . E 5 HOH A 47 547 94 HOH HOH . E 5 HOH A 48 548 18 HOH HOH . E 5 HOH A 49 549 91 HOH HOH . E 5 HOH A 50 550 74 HOH HOH . E 5 HOH A 51 551 2 HOH HOH . E 5 HOH A 52 552 64 HOH HOH . E 5 HOH A 53 553 11 HOH HOH . E 5 HOH A 54 554 82 HOH HOH . E 5 HOH A 55 555 84 HOH HOH . E 5 HOH A 56 556 40 HOH HOH . E 5 HOH A 57 557 85 HOH HOH . E 5 HOH A 58 558 43 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 15 HOH HOH . E 5 HOH A 61 561 25 HOH HOH . E 5 HOH A 62 562 45 HOH HOH . E 5 HOH A 63 563 20 HOH HOH . E 5 HOH A 64 564 23 HOH HOH . E 5 HOH A 65 565 75 HOH HOH . E 5 HOH A 66 566 56 HOH HOH . E 5 HOH A 67 567 47 HOH HOH . E 5 HOH A 68 568 37 HOH HOH . E 5 HOH A 69 569 52 HOH HOH . E 5 HOH A 70 570 7 HOH HOH . E 5 HOH A 71 571 39 HOH HOH . E 5 HOH A 72 572 19 HOH HOH . E 5 HOH A 73 573 21 HOH HOH . E 5 HOH A 74 574 92 HOH HOH . E 5 HOH A 75 575 17 HOH HOH . E 5 HOH A 76 576 29 HOH HOH . E 5 HOH A 77 577 50 HOH HOH . E 5 HOH A 78 578 14 HOH HOH . E 5 HOH A 79 579 89 HOH HOH . E 5 HOH A 80 580 60 HOH HOH . E 5 HOH A 81 581 96 HOH HOH . E 5 HOH A 82 582 38 HOH HOH . E 5 HOH A 83 583 41 HOH HOH . E 5 HOH A 84 584 95 HOH HOH . E 5 HOH A 85 585 76 HOH HOH . E 5 HOH A 86 586 58 HOH HOH . E 5 HOH A 87 587 70 HOH HOH . E 5 HOH A 88 588 93 HOH HOH . E 5 HOH A 89 589 63 HOH HOH . E 5 HOH A 90 590 72 HOH HOH . E 5 HOH A 91 591 105 HOH HOH . E 5 HOH A 92 592 71 HOH HOH . E 5 HOH A 93 593 49 HOH HOH . E 5 HOH A 94 594 62 HOH HOH . E 5 HOH A 95 595 69 HOH HOH . E 5 HOH A 96 596 22 HOH HOH . E 5 HOH A 97 597 97 HOH HOH . E 5 HOH A 98 598 101 HOH HOH . E 5 HOH A 99 599 66 HOH HOH . E 5 HOH A 100 600 100 HOH HOH . E 5 HOH A 101 601 103 HOH HOH . E 5 HOH A 102 602 53 HOH HOH . E 5 HOH A 103 603 83 HOH HOH . E 5 HOH A 104 604 67 HOH HOH . E 5 HOH A 105 605 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O46 ZNZ . . . D 4 -18.898 -23.769 -0.369 1 63.72 ? O46 ZNZ 403 A 1 HETATM 2 P P6 ZNZ . . . D 4 -19.053 -24.559 -1.695 1 69.19 ? P6 ZNZ 403 A 1 HETATM 3 O O26 ZNZ . . . D 4 -19.525 -23.764 -2.78 1 56.34 ? O26 ZNZ 403 A 1 HETATM 4 O O36 ZNZ . . . D 4 -19.761 -25.934 -1.522 1 55.01 ? O36 ZNZ 403 A 1 HETATM 5 O O16 ZNZ . . . D 4 -17.582 -25.04 -2.048 1 71.34 ? O16 ZNZ 403 A 1 HETATM 6 C C6 ZNZ . . . D 4 -16.802 -25.991 -1.284 1 67.83 ? C6 ZNZ 403 A 1 HETATM 7 C C1 ZNZ . . . D 4 -15.962 -26.779 -2.169 1 69.85 ? C1 ZNZ 403 A 1 HETATM 8 O O11 ZNZ . . . D 4 -16.848 -27.405 -2.964 1 68.66 ? O11 ZNZ 403 A 1 HETATM 9 P P1 ZNZ . . . D 4 -16.654 -27.662 -4.397 1 60.49 ? P1 ZNZ 403 A 1 HETATM 10 O O41 ZNZ . . . D 4 -16.325 -29.088 -4.322 1 61.58 ? O41 ZNZ 403 A 1 HETATM 11 O O31 ZNZ . . . D 4 -17.892 -27.574 -5.06 1 63.73 ? O31 ZNZ 403 A 1 HETATM 12 O O21 ZNZ . . . D 4 -15.419 -26.96 -4.987 1 55.3 ? O21 ZNZ 403 A 1 HETATM 13 C C5 ZNZ . . . D 4 -15.926 -25.32 -0.276 1 81.08 ? C5 ZNZ 403 A 1 HETATM 14 O O15 ZNZ . . . D 4 -14.857 -24.574 -0.851 1 76.51 ? O15 ZNZ 403 A 1 HETATM 15 P P5 ZNZ . . . D 4 -14.887 -23.043 -0.958 1 87.04 ? P5 ZNZ 403 A 1 HETATM 16 O O45 ZNZ . . . D 4 -13.432 -22.475 -1.063 1 73.7 ? O45 ZNZ 403 A 1 HETATM 17 O O35 ZNZ . . . D 4 -15.557 -22.717 0.239 1 76.21 ? O35 ZNZ 403 A 1 HETATM 18 O O25 ZNZ . . . D 4 -15.726 -22.879 -2.303 1 77.75 ? O25 ZNZ 403 A 1 HETATM 19 C C4 ZNZ . . . D 4 -15.348 -26.438 0.51 1 84.9 ? C4 ZNZ 403 A 1 HETATM 20 O O14 ZNZ . . . D 4 -14.695 -25.929 1.616 1 85.05 ? O14 ZNZ 403 A 1 HETATM 21 C C3 ZNZ . . . D 4 -14.371 -27.145 -0.33 1 82.72 ? C3 ZNZ 403 A 1 HETATM 22 O O13 ZNZ . . . D 4 -13.624 -28.051 0.468 1 86.14 ? O13 ZNZ 403 A 1 HETATM 23 P P3 ZNZ . . . D 4 -12.182 -27.633 0.976 1 94.13 ? P3 ZNZ 403 A 1 HETATM 24 O O43 ZNZ . . . D 4 -12.253 -26.065 0.952 1 83.37 ? O43 ZNZ 403 A 1 HETATM 25 O O33 ZNZ . . . D 4 -12.117 -27.971 2.39 1 87.45 ? O33 ZNZ 403 A 1 HETATM 26 O O23 ZNZ . . . D 4 -11.108 -28.139 -0.072 1 67.97 ? O23 ZNZ 403 A 1 HETATM 27 C C2 ZNZ . . . D 4 -15.147 -27.863 -1.382 1 78.86 ? C2 ZNZ 403 A 1 HETATM 28 O O12 ZNZ . . . D 4 -14.224 -28.46 -2.246 1 79.38 ? O12 ZNZ 403 A 1 HETATM 29 P P2 ZNZ . . . D 4 -13.874 -29.945 -2.412 1 89.48 ? P2 ZNZ 403 A 1 HETATM 30 O O22 ZNZ . . . D 4 -15.056 -30.747 -1.762 1 78.57 ? O22 ZNZ 403 A 1 HETATM 31 O O32 ZNZ . . . D 4 -12.614 -30.092 -1.741 1 83.02 ? O32 ZNZ 403 A 1 HETATM 32 O O42 ZNZ . . . D 4 -13.74 -30.064 -3.987 1 84.43 ? O42 ZNZ 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #