data_8T92 # _model_server_result.job_id tjeFt2Vf9pnbNP06HxIAoA _model_server_result.datetime_utc '2024-11-05 00:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8T92 # _exptl.entry_id 8T92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T92 _cell.length_a 62.532 _cell.length_b 104.128 _cell.length_c 103.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc2 A OD1 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A OD2 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 A OG SER 217 A SER 233 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc5 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 C MG MG . A MG 402 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 C MG MG . A MG 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc11 D MG MG . A MG 403 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc12 D MG MG . A MG 403 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 D MG MG . A MG 403 1_555 G O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8T92 _atom_sites.fract_transf_matrix[1][1] 0.015992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 3 MG A 1 403 502 MG MG . E 4 XID A 1 404 601 XID SD4 . F 5 PO4 A 1 405 701 PO4 PO4 . G 6 HOH A 1 501 80 HOH HOH . G 6 HOH A 2 502 88 HOH HOH . G 6 HOH A 3 503 16 HOH HOH . G 6 HOH A 4 504 27 HOH HOH . G 6 HOH A 5 505 95 HOH HOH . G 6 HOH A 6 506 2 HOH HOH . G 6 HOH A 7 507 98 HOH HOH . G 6 HOH A 8 508 52 HOH HOH . G 6 HOH A 9 509 65 HOH HOH . G 6 HOH A 10 510 57 HOH HOH . G 6 HOH A 11 511 34 HOH HOH . G 6 HOH A 12 512 44 HOH HOH . G 6 HOH A 13 513 31 HOH HOH . G 6 HOH A 14 514 68 HOH HOH . G 6 HOH A 15 515 23 HOH HOH . G 6 HOH A 16 516 32 HOH HOH . G 6 HOH A 17 517 70 HOH HOH . G 6 HOH A 18 518 9 HOH HOH . G 6 HOH A 19 519 58 HOH HOH . G 6 HOH A 20 520 22 HOH HOH . G 6 HOH A 21 521 30 HOH HOH . G 6 HOH A 22 522 53 HOH HOH . G 6 HOH A 23 523 36 HOH HOH . G 6 HOH A 24 524 74 HOH HOH . G 6 HOH A 25 525 67 HOH HOH . G 6 HOH A 26 526 38 HOH HOH . G 6 HOH A 27 527 4 HOH HOH . G 6 HOH A 28 528 45 HOH HOH . G 6 HOH A 29 529 26 HOH HOH . G 6 HOH A 30 530 51 HOH HOH . G 6 HOH A 31 531 73 HOH HOH . G 6 HOH A 32 532 19 HOH HOH . G 6 HOH A 33 533 91 HOH HOH . G 6 HOH A 34 534 1 HOH HOH . G 6 HOH A 35 535 43 HOH HOH . G 6 HOH A 36 536 10 HOH HOH . G 6 HOH A 37 537 79 HOH HOH . G 6 HOH A 38 538 87 HOH HOH . G 6 HOH A 39 539 37 HOH HOH . G 6 HOH A 40 540 63 HOH HOH . G 6 HOH A 41 541 8 HOH HOH . G 6 HOH A 42 542 85 HOH HOH . G 6 HOH A 43 543 50 HOH HOH . G 6 HOH A 44 544 92 HOH HOH . G 6 HOH A 45 545 25 HOH HOH . G 6 HOH A 46 546 35 HOH HOH . G 6 HOH A 47 547 14 HOH HOH . G 6 HOH A 48 548 13 HOH HOH . G 6 HOH A 49 549 55 HOH HOH . G 6 HOH A 50 550 60 HOH HOH . G 6 HOH A 51 551 49 HOH HOH . G 6 HOH A 52 552 5 HOH HOH . G 6 HOH A 53 553 56 HOH HOH . G 6 HOH A 54 554 28 HOH HOH . G 6 HOH A 55 555 76 HOH HOH . G 6 HOH A 56 556 11 HOH HOH . G 6 HOH A 57 557 72 HOH HOH . G 6 HOH A 58 558 61 HOH HOH . G 6 HOH A 59 559 69 HOH HOH . G 6 HOH A 60 560 17 HOH HOH . G 6 HOH A 61 561 18 HOH HOH . G 6 HOH A 62 562 39 HOH HOH . G 6 HOH A 63 563 64 HOH HOH . G 6 HOH A 64 564 15 HOH HOH . G 6 HOH A 65 565 47 HOH HOH . G 6 HOH A 66 566 7 HOH HOH . G 6 HOH A 67 567 66 HOH HOH . G 6 HOH A 68 568 24 HOH HOH . G 6 HOH A 69 569 29 HOH HOH . G 6 HOH A 70 570 12 HOH HOH . G 6 HOH A 71 571 54 HOH HOH . G 6 HOH A 72 572 78 HOH HOH . G 6 HOH A 73 573 97 HOH HOH . G 6 HOH A 74 574 33 HOH HOH . G 6 HOH A 75 575 3 HOH HOH . G 6 HOH A 76 576 42 HOH HOH . G 6 HOH A 77 577 62 HOH HOH . G 6 HOH A 78 578 46 HOH HOH . G 6 HOH A 79 579 71 HOH HOH . G 6 HOH A 80 580 83 HOH HOH . G 6 HOH A 81 581 6 HOH HOH . G 6 HOH A 82 582 81 HOH HOH . G 6 HOH A 83 583 86 HOH HOH . G 6 HOH A 84 584 96 HOH HOH . G 6 HOH A 85 585 77 HOH HOH . G 6 HOH A 86 586 41 HOH HOH . G 6 HOH A 87 587 20 HOH HOH . G 6 HOH A 88 588 84 HOH HOH . G 6 HOH A 89 589 21 HOH HOH . G 6 HOH A 90 590 40 HOH HOH . G 6 HOH A 91 591 93 HOH HOH . G 6 HOH A 92 592 48 HOH HOH . G 6 HOH A 93 593 75 HOH HOH . G 6 HOH A 94 594 82 HOH HOH . G 6 HOH A 95 595 94 HOH HOH . G 6 HOH A 96 596 59 HOH HOH . G 6 HOH A 97 597 90 HOH HOH . G 6 HOH A 98 598 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -19.473 -18.976 -1.416 1 27.61 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -19.738 -20.271 -2.111 1 23.92 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -19.518 -19.075 0.084 1 24.68 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -18.211 -18.285 -1.937 1 23.54 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -21.497 -17.712 -3.114 1 22.41 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -21.341 -18.888 -4.029 1 21.16 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -21.055 -16.363 -3.554 1 26.32 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -20.729 -17.98 -1.743 1 22.94 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -23.016 -17.655 -2.616 1 24.17 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -23.527 -18.733 -1.784 1 21.78 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -25.029 -18.687 -1.795 1 21.77 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -25.474 -17.346 -1.444 1 21.23 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -25.696 -18.993 -3.136 1 22.8 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -25.985 -20.383 -3.25 1 23.35 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -26.983 -18.169 -3.042 1 21.6 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -28.011 -18.85 -2.352 1 19.76 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -26.552 -16.939 -2.249 1 20.59 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -26.12 -15.765 -3.017 1 20.9 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -24.843 -15.354 -3.335 1 23.08 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -24.778 -14.188 -3.943 1 23.15 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -26.103 -13.779 -3.987 1 22.34 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -26.715 -12.615 -4.485 1 20.95 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -26.046 -11.588 -5.008 1 18.89 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -28.054 -12.502 -4.311 1 20.32 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -28.712 -13.507 -3.73 1 21.37 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -28.253 -14.671 -3.282 1 20.61 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -26.925 -14.732 -3.408 1 21.15 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #