data_8T92 # _model_server_result.job_id APgfDOwZ_WXFSJuJKENOCg _model_server_result.datetime_utc '2024-11-05 00:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8T92 # _exptl.entry_id 8T92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.075 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2R,3R,4S,5R,6R)-5,6-dihydroxycyclohexane-1,2,3,4-tetrayl tetrakis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T92 _cell.length_a 62.532 _cell.length_b 104.128 _cell.length_c 103.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc2 A OD1 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A OD2 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 A OG SER 217 A SER 233 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc5 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 C MG MG . A MG 402 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 C MG MG . A MG 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc11 D MG MG . A MG 403 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc12 D MG MG . A MG 403 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 D MG MG . A MG 403 1_555 G O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id XID _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2R,3R,4S,5R,6R)-5,6-dihydroxycyclohexane-1,2,3,4-tetrayl tetrakis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O44 P4 XID doub 424 n n O35 P5 XID doub 425 n n O25 P5 XID sing 426 n n O34 P4 XID sing 427 n n P5 O45 XID sing 428 n n P5 O15 XID sing 429 n n P4 O24 XID sing 430 n n P4 O14 XID sing 431 n n O15 C5 XID sing 432 n n O14 C4 XID sing 433 n n O46 P6 XID doub 434 n n C5 C4 XID sing 435 n n C5 C6 XID sing 436 n n O23 P3 XID doub 437 n n C4 C3 XID sing 438 n n O26 P6 XID sing 439 n n P6 O16 XID sing 440 n n P6 O36 XID sing 441 n n C6 O16 XID sing 442 n n C6 C1 XID sing 443 n n O13 P3 XID sing 444 n n O13 C3 XID sing 445 n n P3 O43 XID sing 446 n n P3 O33 XID sing 447 n n C3 C2 XID sing 448 n n C2 C1 XID sing 449 n n C2 O12 XID sing 450 n n C1 O11 XID sing 451 n n C1 H1 XID sing 452 n n C2 H2 XID sing 453 n n C3 H3 XID sing 454 n n C4 H4 XID sing 455 n n C5 H5 XID sing 456 n n C6 H6 XID sing 457 n n O11 H7 XID sing 458 n n O12 H8 XID sing 459 n n O24 H9 XID sing 460 n n O25 H10 XID sing 461 n n O26 H11 XID sing 462 n n O33 H12 XID sing 463 n n O34 H13 XID sing 464 n n O36 H14 XID sing 465 n n O43 H15 XID sing 466 n n O45 H16 XID sing 467 n n # _atom_sites.entry_id 8T92 _atom_sites.fract_transf_matrix[1][1] 0.015992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 3 MG A 1 403 502 MG MG . E 4 XID A 1 404 601 XID SD4 . F 5 PO4 A 1 405 701 PO4 PO4 . G 6 HOH A 1 501 80 HOH HOH . G 6 HOH A 2 502 88 HOH HOH . G 6 HOH A 3 503 16 HOH HOH . G 6 HOH A 4 504 27 HOH HOH . G 6 HOH A 5 505 95 HOH HOH . G 6 HOH A 6 506 2 HOH HOH . G 6 HOH A 7 507 98 HOH HOH . G 6 HOH A 8 508 52 HOH HOH . G 6 HOH A 9 509 65 HOH HOH . G 6 HOH A 10 510 57 HOH HOH . G 6 HOH A 11 511 34 HOH HOH . G 6 HOH A 12 512 44 HOH HOH . G 6 HOH A 13 513 31 HOH HOH . G 6 HOH A 14 514 68 HOH HOH . G 6 HOH A 15 515 23 HOH HOH . G 6 HOH A 16 516 32 HOH HOH . G 6 HOH A 17 517 70 HOH HOH . G 6 HOH A 18 518 9 HOH HOH . G 6 HOH A 19 519 58 HOH HOH . G 6 HOH A 20 520 22 HOH HOH . G 6 HOH A 21 521 30 HOH HOH . G 6 HOH A 22 522 53 HOH HOH . G 6 HOH A 23 523 36 HOH HOH . G 6 HOH A 24 524 74 HOH HOH . G 6 HOH A 25 525 67 HOH HOH . G 6 HOH A 26 526 38 HOH HOH . G 6 HOH A 27 527 4 HOH HOH . G 6 HOH A 28 528 45 HOH HOH . G 6 HOH A 29 529 26 HOH HOH . G 6 HOH A 30 530 51 HOH HOH . G 6 HOH A 31 531 73 HOH HOH . G 6 HOH A 32 532 19 HOH HOH . G 6 HOH A 33 533 91 HOH HOH . G 6 HOH A 34 534 1 HOH HOH . G 6 HOH A 35 535 43 HOH HOH . G 6 HOH A 36 536 10 HOH HOH . G 6 HOH A 37 537 79 HOH HOH . G 6 HOH A 38 538 87 HOH HOH . G 6 HOH A 39 539 37 HOH HOH . G 6 HOH A 40 540 63 HOH HOH . G 6 HOH A 41 541 8 HOH HOH . G 6 HOH A 42 542 85 HOH HOH . G 6 HOH A 43 543 50 HOH HOH . G 6 HOH A 44 544 92 HOH HOH . G 6 HOH A 45 545 25 HOH HOH . G 6 HOH A 46 546 35 HOH HOH . G 6 HOH A 47 547 14 HOH HOH . G 6 HOH A 48 548 13 HOH HOH . G 6 HOH A 49 549 55 HOH HOH . G 6 HOH A 50 550 60 HOH HOH . G 6 HOH A 51 551 49 HOH HOH . G 6 HOH A 52 552 5 HOH HOH . G 6 HOH A 53 553 56 HOH HOH . G 6 HOH A 54 554 28 HOH HOH . G 6 HOH A 55 555 76 HOH HOH . G 6 HOH A 56 556 11 HOH HOH . G 6 HOH A 57 557 72 HOH HOH . G 6 HOH A 58 558 61 HOH HOH . G 6 HOH A 59 559 69 HOH HOH . G 6 HOH A 60 560 17 HOH HOH . G 6 HOH A 61 561 18 HOH HOH . G 6 HOH A 62 562 39 HOH HOH . G 6 HOH A 63 563 64 HOH HOH . G 6 HOH A 64 564 15 HOH HOH . G 6 HOH A 65 565 47 HOH HOH . G 6 HOH A 66 566 7 HOH HOH . G 6 HOH A 67 567 66 HOH HOH . G 6 HOH A 68 568 24 HOH HOH . G 6 HOH A 69 569 29 HOH HOH . G 6 HOH A 70 570 12 HOH HOH . G 6 HOH A 71 571 54 HOH HOH . G 6 HOH A 72 572 78 HOH HOH . G 6 HOH A 73 573 97 HOH HOH . G 6 HOH A 74 574 33 HOH HOH . G 6 HOH A 75 575 3 HOH HOH . G 6 HOH A 76 576 42 HOH HOH . G 6 HOH A 77 577 62 HOH HOH . G 6 HOH A 78 578 46 HOH HOH . G 6 HOH A 79 579 71 HOH HOH . G 6 HOH A 80 580 83 HOH HOH . G 6 HOH A 81 581 6 HOH HOH . G 6 HOH A 82 582 81 HOH HOH . G 6 HOH A 83 583 86 HOH HOH . G 6 HOH A 84 584 96 HOH HOH . G 6 HOH A 85 585 77 HOH HOH . G 6 HOH A 86 586 41 HOH HOH . G 6 HOH A 87 587 20 HOH HOH . G 6 HOH A 88 588 84 HOH HOH . G 6 HOH A 89 589 21 HOH HOH . G 6 HOH A 90 590 40 HOH HOH . G 6 HOH A 91 591 93 HOH HOH . G 6 HOH A 92 592 48 HOH HOH . G 6 HOH A 93 593 75 HOH HOH . G 6 HOH A 94 594 82 HOH HOH . G 6 HOH A 95 595 94 HOH HOH . G 6 HOH A 96 596 59 HOH HOH . G 6 HOH A 97 597 90 HOH HOH . G 6 HOH A 98 598 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XID . . . E 4 -15.907 -26.351 0.767 1 49.08 ? C1 XID 404 A 1 HETATM 2 C C2 XID . . . E 4 -15.988 -24.818 0.718 1 47.68 ? C2 XID 404 A 1 HETATM 3 C C3 XID . . . E 4 -14.986 -24.33 -0.332 1 47.41 ? C3 XID 404 A 1 HETATM 4 P P3 XID . . . E 4 -13.65 -21.907 -0.372 1 68.34 ? P3 XID 404 A 1 HETATM 5 C C4 XID . . . E 4 -15.444 -24.81 -1.668 1 41.34 ? C4 XID 404 A 1 HETATM 6 P P4 XID . . . E 4 -15.129 -23.313 -3.931 1 37.22 ? P4 XID 404 A 1 HETATM 7 C C5 XID . . . E 4 -15.401 -26.297 -1.751 1 37.72 ? C5 XID 404 A 1 HETATM 8 P P5 XID . . . E 4 -15.313 -27.49 -4.087 1 34.93 ? P5 XID 404 A 1 HETATM 9 C C6 XID . . . E 4 -16.254 -26.919 -0.642 1 43.13 ? C6 XID 404 A 1 HETATM 10 P P6 XID . . . E 4 -17.178 -29.42 -0.793 1 56.16 ? P6 XID 404 A 1 HETATM 11 O O11 XID . . . E 4 -16.834 -26.905 1.745 1 52.36 ? O11 XID 404 A 1 HETATM 12 O O12 XID . . . E 4 -15.675 -24.286 1.966 1 49.97 ? O12 XID 404 A 1 HETATM 13 O O13 XID . . . E 4 -14.955 -22.917 -0.41 1 56.48 ? O13 XID 404 A 1 HETATM 14 O O14 XID . . . E 4 -14.595 -24.206 -2.664 1 38.3 ? O14 XID 404 A 1 HETATM 15 O O15 XID . . . E 4 -15.949 -26.599 -2.957 1 34.65 ? O15 XID 404 A 1 HETATM 16 O O16 XID . . . E 4 -15.998 -28.322 -0.577 1 50.06 ? O16 XID 404 A 1 HETATM 17 O O23 XID . . . E 4 -13.256 -21.342 -1.713 1 51.29 ? O23 XID 404 A 1 HETATM 18 O O24 XID . . . E 4 -16.468 -22.833 -3.509 1 37.41 ? O24 XID 404 A 1 HETATM 19 O O25 XID . . . E 4 -14.123 -26.6 -4.683 1 39.07 ? O25 XID 404 A 1 HETATM 20 O O26 XID . . . E 4 -18.443 -28.708 -0.997 1 47.18 ? O26 XID 404 A 1 HETATM 21 O O33 XID . . . E 4 -14.68 -21.145 0.685 1 51.65 ? O33 XID 404 A 1 HETATM 22 O O34 XID . . . E 4 -14.034 -22.192 -4.14 1 38.35 ? O34 XID 404 A 1 HETATM 23 O O35 XID . . . E 4 -16.472 -27.752 -4.966 1 32.53 ? O35 XID 404 A 1 HETATM 24 O O36 XID . . . E 4 -17.145 -30.321 0.527 1 69.79 ? O36 XID 404 A 1 HETATM 25 O O43 XID . . . E 4 -12.391 -22.375 0.497 1 69.32 ? O43 XID 404 A 1 HETATM 26 O O44 XID . . . E 4 -15.102 -24.265 -5.202 1 27.84 ? O44 XID 404 A 1 HETATM 27 O O45 XID . . . E 4 -14.722 -28.825 -3.345 1 38.71 ? O45 XID 404 A 1 HETATM 28 O O46 XID . . . E 4 -16.526 -30.151 -2.092 1 51.5 ? O46 XID 404 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #