data_8T95 # _model_server_result.job_id xRh85DwEKW7EAJmrw0308g _model_server_result.datetime_utc '2024-11-16 05:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8T95 # _exptl.entry_id 8T95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.075 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3R,4R,6S)-1,3,4,6-TETRAPKISPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T95 _cell.length_a 64.258 _cell.length_b 103.064 _cell.length_c 104.065 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 C MG MG . A MG 402 1_555 D O45 I4P . A I4P 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id I4P _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3R,4R,6S)-1,3,4,6-TETRAPKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O41 P1 I4P sing 196 n n O41 H41 I4P sing 197 n n P1 O21 I4P doub 198 n n P1 O31 I4P sing 199 n n P1 O11 I4P sing 200 n n O31 H31 I4P sing 201 n n O11 C1 I4P sing 202 n n C1 C2 I4P sing 203 n n C1 C6 I4P sing 204 n n C1 H1 I4P sing 205 n n C2 O16 I4P sing 206 n n C2 C3 I4P sing 207 n n C2 H2 I4P sing 208 n n O16 H16 I4P sing 209 n n C3 O15 I4P sing 210 n n C3 C4 I4P sing 211 n n C3 H3 I4P sing 212 n n O15 P5 I4P sing 213 n n P5 O45 I4P doub 214 n n P5 O25 I4P sing 215 n n P5 O35 I4P sing 216 n n O25 H25 I4P sing 217 n n O35 H35 I4P sing 218 n n C4 O14 I4P sing 219 n n C4 C5 I4P sing 220 n n C4 H4 I4P sing 221 n n O14 P4 I4P sing 222 n n P4 O44 I4P sing 223 n n P4 O24 I4P doub 224 n n P4 O34 I4P sing 225 n n O44 H44 I4P sing 226 n n O34 H34 I4P sing 227 n n C5 O13 I4P sing 228 n n C5 C6 I4P sing 229 n n C5 H5 I4P sing 230 n n O13 H13 I4P sing 231 n n C6 O12 I4P sing 232 n n C6 H6 I4P sing 233 n n O12 P2 I4P sing 234 n n P2 O42 I4P sing 235 n n P2 O22 I4P sing 236 n n P2 O32 I4P doub 237 n n O42 H42 I4P sing 238 n n O22 H22 I4P sing 239 n n # _atom_sites.entry_id 8T95 _atom_sites.fract_transf_matrix[1][1] 0.015562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 4 I4P A 1 403 601 I4P SI4 . E 5 HOH A 1 501 7 HOH HOH . E 5 HOH A 2 502 69 HOH HOH . E 5 HOH A 3 503 2 HOH HOH . E 5 HOH A 4 504 64 HOH HOH . E 5 HOH A 5 505 54 HOH HOH . E 5 HOH A 6 506 18 HOH HOH . E 5 HOH A 7 507 42 HOH HOH . E 5 HOH A 8 508 77 HOH HOH . E 5 HOH A 9 509 27 HOH HOH . E 5 HOH A 10 510 15 HOH HOH . E 5 HOH A 11 511 8 HOH HOH . E 5 HOH A 12 512 44 HOH HOH . E 5 HOH A 13 513 1 HOH HOH . E 5 HOH A 14 514 11 HOH HOH . E 5 HOH A 15 515 24 HOH HOH . E 5 HOH A 16 516 50 HOH HOH . E 5 HOH A 17 517 59 HOH HOH . E 5 HOH A 18 518 55 HOH HOH . E 5 HOH A 19 519 9 HOH HOH . E 5 HOH A 20 520 43 HOH HOH . E 5 HOH A 21 521 34 HOH HOH . E 5 HOH A 22 522 38 HOH HOH . E 5 HOH A 23 523 56 HOH HOH . E 5 HOH A 24 524 61 HOH HOH . E 5 HOH A 25 525 35 HOH HOH . E 5 HOH A 26 526 40 HOH HOH . E 5 HOH A 27 527 17 HOH HOH . E 5 HOH A 28 528 13 HOH HOH . E 5 HOH A 29 529 36 HOH HOH . E 5 HOH A 30 530 52 HOH HOH . E 5 HOH A 31 531 14 HOH HOH . E 5 HOH A 32 532 5 HOH HOH . E 5 HOH A 33 533 53 HOH HOH . E 5 HOH A 34 534 62 HOH HOH . E 5 HOH A 35 535 4 HOH HOH . E 5 HOH A 36 536 32 HOH HOH . E 5 HOH A 37 537 6 HOH HOH . E 5 HOH A 38 538 31 HOH HOH . E 5 HOH A 39 539 79 HOH HOH . E 5 HOH A 40 540 41 HOH HOH . E 5 HOH A 41 541 49 HOH HOH . E 5 HOH A 42 542 48 HOH HOH . E 5 HOH A 43 543 21 HOH HOH . E 5 HOH A 44 544 19 HOH HOH . E 5 HOH A 45 545 30 HOH HOH . E 5 HOH A 46 546 12 HOH HOH . E 5 HOH A 47 547 3 HOH HOH . E 5 HOH A 48 548 26 HOH HOH . E 5 HOH A 49 549 23 HOH HOH . E 5 HOH A 50 550 51 HOH HOH . E 5 HOH A 51 551 75 HOH HOH . E 5 HOH A 52 552 16 HOH HOH . E 5 HOH A 53 553 25 HOH HOH . E 5 HOH A 54 554 10 HOH HOH . E 5 HOH A 55 555 20 HOH HOH . E 5 HOH A 56 556 29 HOH HOH . E 5 HOH A 57 557 46 HOH HOH . E 5 HOH A 58 558 39 HOH HOH . E 5 HOH A 59 559 66 HOH HOH . E 5 HOH A 60 560 73 HOH HOH . E 5 HOH A 61 561 57 HOH HOH . E 5 HOH A 62 562 22 HOH HOH . E 5 HOH A 63 563 37 HOH HOH . E 5 HOH A 64 564 33 HOH HOH . E 5 HOH A 65 565 78 HOH HOH . E 5 HOH A 66 566 58 HOH HOH . E 5 HOH A 67 567 71 HOH HOH . E 5 HOH A 68 568 28 HOH HOH . E 5 HOH A 69 569 72 HOH HOH . E 5 HOH A 70 570 76 HOH HOH . E 5 HOH A 71 571 45 HOH HOH . E 5 HOH A 72 572 74 HOH HOH . E 5 HOH A 73 573 65 HOH HOH . E 5 HOH A 74 574 67 HOH HOH . E 5 HOH A 75 575 68 HOH HOH . E 5 HOH A 76 576 60 HOH HOH . E 5 HOH A 77 577 47 HOH HOH . E 5 HOH A 78 578 70 HOH HOH . E 5 HOH A 79 579 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O41 I4P . . . D 4 -17.112 -23.752 4.21 1 122.42 ? O41 I4P 403 A 1 HETATM 2 P P1 I4P . . . D 4 -16.112 -23.694 3.141 1 129.62 ? P1 I4P 403 A 1 HETATM 3 O O21 I4P . . . D 4 -15.648 -22.207 2.748 1 125.39 ? O21 I4P 403 A 1 HETATM 4 O O31 I4P . . . D 4 -14.923 -24.767 3.334 1 119.08 ? O31 I4P 403 A 1 HETATM 5 O O11 I4P . . . D 4 -16.856 -24.308 1.828 1 134.58 ? O11 I4P 403 A 1 HETATM 6 C C1 I4P . . . D 4 -16.622 -24.013 0.402 1 129.89 ? C1 I4P 403 A 1 HETATM 7 C C2 I4P . . . D 4 -18.011 -23.951 -0.27 1 123.06 ? C2 I4P 403 A 1 HETATM 8 O O16 I4P . . . D 4 -18.428 -22.576 -0.212 1 112.42 ? O16 I4P 403 A 1 HETATM 9 C C3 I4P . . . D 4 -18.09 -24.445 -1.717 1 117.38 ? C3 I4P 403 A 1 HETATM 10 O O15 I4P . . . D 4 -19.442 -24.892 -2.083 1 114.43 ? O15 I4P 403 A 1 HETATM 11 P P5 I4P . . . D 4 -20.657 -23.903 -2.384 1 113.59 ? P5 I4P 403 A 1 HETATM 12 O O45 I4P . . . D 4 -20.19 -22.806 -3.458 1 93.51 ? O45 I4P 403 A 1 HETATM 13 O O25 I4P . . . D 4 -20.768 -23.429 -1.011 1 123.41 ? O25 I4P 403 A 1 HETATM 14 O O35 I4P . . . D 4 -21.854 -24.886 -2.899 1 88.89 ? O35 I4P 403 A 1 HETATM 15 C C4 I4P . . . D 4 -17.257 -25.649 -1.961 1 112.99 ? C4 I4P 403 A 1 HETATM 16 O O14 I4P . . . D 4 -17.323 -25.779 -3.348 1 103.85 ? O14 I4P 403 A 1 HETATM 17 P P4 I4P . . . D 4 -17.179 -27.076 -4.197 1 90.19 ? P4 I4P 403 A 1 HETATM 18 O O44 I4P . . . D 4 -18.715 -27.54 -4.472 1 80.36 ? O44 I4P 403 A 1 HETATM 19 O O24 I4P . . . D 4 -16.573 -26.462 -5.525 1 86.77 ? O24 I4P 403 A 1 HETATM 20 O O34 I4P . . . D 4 -16.432 -28.113 -3.444 1 97.91 ? O34 I4P 403 A 1 HETATM 21 C C5 I4P . . . D 4 -15.851 -25.381 -1.63 1 125.01 ? C5 I4P 403 A 1 HETATM 22 O O13 I4P . . . D 4 -15.123 -26.572 -1.968 1 122.91 ? O13 I4P 403 A 1 HETATM 23 C C6 I4P . . . D 4 -15.684 -25.094 -0.153 1 137.15 ? C6 I4P 403 A 1 HETATM 24 O O12 I4P . . . D 4 -14.329 -24.645 0.045 1 156.01 ? O12 I4P 403 A 1 HETATM 25 P P2 I4P . . . D 4 -13.15 -25.643 0.479 1 161.6 ? P2 I4P 403 A 1 HETATM 26 O O42 I4P . . . D 4 -13.69 -26.242 1.88 1 146.24 ? O42 I4P 403 A 1 HETATM 27 O O22 I4P . . . D 4 -11.92 -24.628 0.597 1 134.86 ? O22 I4P 403 A 1 HETATM 28 O O32 I4P . . . D 4 -13.064 -26.653 -0.584 1 155.57 ? O32 I4P 403 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #