data_8T96 # _model_server_result.job_id JyrnNPmiEnXTPWp3RitCqQ _model_server_result.datetime_utc '2024-11-27 18:09:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8T96 # _exptl.entry_id 8T96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'neo-Inositol pentakisphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T96 _cell.length_a 63.562 _cell.length_b 103.358 _cell.length_c 104.193 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A OD1 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc3 A OD2 ASP 215 A ASP 231 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc4 A OG SER 217 A SER 233 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc5 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc6 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O1 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc9 C MG MG . A MG 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc11 C MG MG . A MG 402 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc12 D MG MG . A MG 403 1_555 E O46 K7V . A K7V 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc13 D MG MG . A MG 403 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc14 D MG MG . A MG 403 1_555 G O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id K7V _chem_comp.mon_nstd_flag . _chem_comp.name 'neo-Inositol pentakisphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 P1 K7V doub 217 n n O43 P3 K7V doub 218 n n P1 O31 K7V sing 219 n n P1 O11 K7V sing 220 n n P1 O41 K7V sing 221 n n O12 C2 K7V sing 222 n n O11 C1 K7V sing 223 n n C2 C1 K7V sing 224 n n C2 C3 K7V sing 225 n n P3 O33 K7V sing 226 n n P3 O13 K7V sing 227 n n P3 O23 K7V sing 228 n n C1 C6 K7V sing 229 n n O13 C3 K7V sing 230 n n O46 P6 K7V doub 231 n n C3 C4 K7V sing 232 n n C6 O16 K7V sing 233 n n C6 C5 K7V sing 234 n n O26 P6 K7V sing 235 n n P6 O16 K7V sing 236 n n P6 O36 K7V sing 237 n n C4 C5 K7V sing 238 n n C4 O14 K7V sing 239 n n C5 O15 K7V sing 240 n n O14 P4 K7V sing 241 n n O15 P5 K7V sing 242 n n O44 P4 K7V doub 243 n n P4 O34 K7V sing 244 n n P4 O24 K7V sing 245 n n O25 P5 K7V doub 246 n n P5 O35 K7V sing 247 n n P5 O45 K7V sing 248 n n C1 H1 K7V sing 249 n n C2 H2 K7V sing 250 n n C3 H3 K7V sing 251 n n C4 H4 K7V sing 252 n n C5 H5 K7V sing 253 n n C6 H6 K7V sing 254 n n O12 H7 K7V sing 255 n n O23 H8 K7V sing 256 n n O24 H9 K7V sing 257 n n O26 H10 K7V sing 258 n n O31 H11 K7V sing 259 n n O33 H12 K7V sing 260 n n O34 H13 K7V sing 261 n n O35 H14 K7V sing 262 n n O36 H15 K7V sing 263 n n O41 H16 K7V sing 264 n n O45 H17 K7V sing 265 n n # _atom_sites.entry_id 8T96 _atom_sites.fract_transf_matrix[1][1] 0.015733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 501 MG MG . D 3 MG A 1 403 502 MG MG . E 4 K7V A 1 404 601 K7V S5P . F 5 PO4 A 1 405 701 PO4 PO4 . G 6 HOH A 1 501 115 HOH HOH . G 6 HOH A 2 502 110 HOH HOH . G 6 HOH A 3 503 57 HOH HOH . G 6 HOH A 4 504 69 HOH HOH . G 6 HOH A 5 505 105 HOH HOH . G 6 HOH A 6 506 71 HOH HOH . G 6 HOH A 7 507 22 HOH HOH . G 6 HOH A 8 508 27 HOH HOH . G 6 HOH A 9 509 64 HOH HOH . G 6 HOH A 10 510 18 HOH HOH . G 6 HOH A 11 511 2 HOH HOH . G 6 HOH A 12 512 1 HOH HOH . G 6 HOH A 13 513 38 HOH HOH . G 6 HOH A 14 514 88 HOH HOH . G 6 HOH A 15 515 82 HOH HOH . G 6 HOH A 16 516 49 HOH HOH . G 6 HOH A 17 517 44 HOH HOH . G 6 HOH A 18 518 74 HOH HOH . G 6 HOH A 19 519 62 HOH HOH . G 6 HOH A 20 520 101 HOH HOH . G 6 HOH A 21 521 58 HOH HOH . G 6 HOH A 22 522 86 HOH HOH . G 6 HOH A 23 523 54 HOH HOH . G 6 HOH A 24 524 46 HOH HOH . G 6 HOH A 25 525 15 HOH HOH . G 6 HOH A 26 526 70 HOH HOH . G 6 HOH A 27 527 13 HOH HOH . G 6 HOH A 28 528 14 HOH HOH . G 6 HOH A 29 529 81 HOH HOH . G 6 HOH A 30 530 67 HOH HOH . G 6 HOH A 31 531 41 HOH HOH . G 6 HOH A 32 532 34 HOH HOH . G 6 HOH A 33 533 79 HOH HOH . G 6 HOH A 34 534 23 HOH HOH . G 6 HOH A 35 535 17 HOH HOH . G 6 HOH A 36 536 37 HOH HOH . G 6 HOH A 37 537 19 HOH HOH . G 6 HOH A 38 538 11 HOH HOH . G 6 HOH A 39 539 52 HOH HOH . G 6 HOH A 40 540 21 HOH HOH . G 6 HOH A 41 541 56 HOH HOH . G 6 HOH A 42 542 31 HOH HOH . G 6 HOH A 43 543 32 HOH HOH . G 6 HOH A 44 544 25 HOH HOH . G 6 HOH A 45 545 16 HOH HOH . G 6 HOH A 46 546 35 HOH HOH . G 6 HOH A 47 547 66 HOH HOH . G 6 HOH A 48 548 6 HOH HOH . G 6 HOH A 49 549 76 HOH HOH . G 6 HOH A 50 550 103 HOH HOH . G 6 HOH A 51 551 53 HOH HOH . G 6 HOH A 52 552 48 HOH HOH . G 6 HOH A 53 553 39 HOH HOH . G 6 HOH A 54 554 104 HOH HOH . G 6 HOH A 55 555 12 HOH HOH . G 6 HOH A 56 556 47 HOH HOH . G 6 HOH A 57 557 93 HOH HOH . G 6 HOH A 58 558 83 HOH HOH . G 6 HOH A 59 559 40 HOH HOH . G 6 HOH A 60 560 43 HOH HOH . G 6 HOH A 61 561 42 HOH HOH . G 6 HOH A 62 562 61 HOH HOH . G 6 HOH A 63 563 60 HOH HOH . G 6 HOH A 64 564 50 HOH HOH . G 6 HOH A 65 565 4 HOH HOH . G 6 HOH A 66 566 7 HOH HOH . G 6 HOH A 67 567 73 HOH HOH . G 6 HOH A 68 568 26 HOH HOH . G 6 HOH A 69 569 20 HOH HOH . G 6 HOH A 70 570 55 HOH HOH . G 6 HOH A 71 571 5 HOH HOH . G 6 HOH A 72 572 10 HOH HOH . G 6 HOH A 73 573 78 HOH HOH . G 6 HOH A 74 574 3 HOH HOH . G 6 HOH A 75 575 68 HOH HOH . G 6 HOH A 76 576 94 HOH HOH . G 6 HOH A 77 577 59 HOH HOH . G 6 HOH A 78 578 65 HOH HOH . G 6 HOH A 79 579 45 HOH HOH . G 6 HOH A 80 580 51 HOH HOH . G 6 HOH A 81 581 29 HOH HOH . G 6 HOH A 82 582 8 HOH HOH . G 6 HOH A 83 583 30 HOH HOH . G 6 HOH A 84 584 90 HOH HOH . G 6 HOH A 85 585 77 HOH HOH . G 6 HOH A 86 586 28 HOH HOH . G 6 HOH A 87 587 80 HOH HOH . G 6 HOH A 88 588 100 HOH HOH . G 6 HOH A 89 589 102 HOH HOH . G 6 HOH A 90 590 111 HOH HOH . G 6 HOH A 91 591 9 HOH HOH . G 6 HOH A 92 592 84 HOH HOH . G 6 HOH A 93 593 33 HOH HOH . G 6 HOH A 94 594 95 HOH HOH . G 6 HOH A 95 595 91 HOH HOH . G 6 HOH A 96 596 99 HOH HOH . G 6 HOH A 97 597 24 HOH HOH . G 6 HOH A 98 598 75 HOH HOH . G 6 HOH A 99 599 106 HOH HOH . G 6 HOH A 100 600 97 HOH HOH . G 6 HOH A 101 601 63 HOH HOH . G 6 HOH A 102 602 85 HOH HOH . G 6 HOH A 103 603 92 HOH HOH . G 6 HOH A 104 604 108 HOH HOH . G 6 HOH A 105 605 89 HOH HOH . G 6 HOH A 106 606 114 HOH HOH . G 6 HOH A 107 607 96 HOH HOH . G 6 HOH A 108 608 109 HOH HOH . G 6 HOH A 109 609 98 HOH HOH . G 6 HOH A 110 610 87 HOH HOH . G 6 HOH A 111 611 107 HOH HOH . G 6 HOH A 112 612 113 HOH HOH . G 6 HOH A 113 613 72 HOH HOH . G 6 HOH A 114 614 36 HOH HOH . G 6 HOH A 115 615 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 K7V . . . E 4 -15.914 -23.685 2.876 1 131.43 ? P1 K7V 404 A 1 HETATM 2 P P3 K7V . . . E 4 -18.203 -29.011 -0.836 1 93.34 ? P3 K7V 404 A 1 HETATM 3 P P4 K7V . . . E 4 -16.111 -27.591 -4.137 1 80.78 ? P4 K7V 404 A 1 HETATM 4 P P5 K7V . . . E 4 -15.945 -23.371 -4.272 1 75.26 ? P5 K7V 404 A 1 HETATM 5 P P6 K7V . . . E 4 -14.716 -21.425 -0.82 1 91.82 ? P6 K7V 404 A 1 HETATM 6 C C1 K7V . . . E 4 -16.346 -24.472 0.446 1 105.98 ? C1 K7V 404 A 1 HETATM 7 C C2 K7V . . . E 4 -16.363 -26.005 0.495 1 109.83 ? C2 K7V 404 A 1 HETATM 8 C C3 K7V . . . E 4 -17.015 -26.598 -0.718 1 95.69 ? C3 K7V 404 A 1 HETATM 9 C C4 K7V . . . E 4 -16.253 -26.146 -1.891 1 86.44 ? C4 K7V 404 A 1 HETATM 10 C C5 K7V . . . E 4 -16.343 -24.652 -2.018 1 89.02 ? C5 K7V 404 A 1 HETATM 11 C C6 K7V . . . E 4 -15.747 -23.961 -0.842 1 97.77 ? C6 K7V 404 A 1 HETATM 12 O O11 K7V . . . E 4 -15.446 -24.07 1.442 1 119.94 ? O11 K7V 404 A 1 HETATM 13 O O12 K7V . . . E 4 -17.096 -26.443 1.641 1 119.37 ? O12 K7V 404 A 1 HETATM 14 O O13 K7V . . . E 4 -16.927 -28.039 -0.627 1 96 ? O13 K7V 404 A 1 HETATM 15 O O14 K7V . . . E 4 -16.867 -26.689 -3.019 1 82.8 ? O14 K7V 404 A 1 HETATM 16 O O15 K7V . . . E 4 -15.504 -24.303 -3.102 1 84.44 ? O15 K7V 404 A 1 HETATM 17 O O16 K7V . . . E 4 -15.925 -22.513 -0.999 1 99.44 ? O16 K7V 404 A 1 HETATM 18 O O21 K7V . . . E 4 -16.937 -24.704 3.232 1 118.83 ? O21 K7V 404 A 1 HETATM 19 O O23 K7V . . . E 4 -18.877 -29.082 0.62 1 86.16 ? O23 K7V 404 A 1 HETATM 20 O O24 K7V . . . E 4 -17.54 -27.704 -4.842 1 73.11 ? O24 K7V 404 A 1 HETATM 21 O O25 K7V . . . E 4 -15.061 -22.218 -4.108 1 83.86 ? O25 K7V 404 A 1 HETATM 22 O O26 K7V . . . E 4 -13.302 -22.096 -1.112 1 86.52 ? O26 K7V 404 A 1 HETATM 23 O O31 K7V . . . E 4 -14.564 -23.721 3.745 1 121.2 ? O31 K7V 404 A 1 HETATM 24 O O33 K7V . . . E 4 -19.023 -28.405 -1.909 1 101.22 ? O33 K7V 404 A 1 HETATM 25 O O34 K7V . . . E 4 -15.105 -26.686 -4.718 1 68.65 ? O34 K7V 404 A 1 HETATM 26 O O35 K7V . . . E 4 -17.507 -23.121 -3.963 1 77.42 ? O35 K7V 404 A 1 HETATM 27 O O36 K7V . . . E 4 -14.94 -21.006 0.562 1 103.81 ? O36 K7V 404 A 1 HETATM 28 O O41 K7V . . . E 4 -16.477 -22.2 2.57 1 127.5 ? O41 K7V 404 A 1 HETATM 29 O O43 K7V . . . E 4 -17.411 -30.34 -1.296 1 92.05 ? O43 K7V 404 A 1 HETATM 30 O O44 K7V . . . E 4 -15.57 -28.776 -3.169 1 81.26 ? O44 K7V 404 A 1 HETATM 31 O O45 K7V . . . E 4 -15.601 -24.265 -5.58 1 58.16 ? O45 K7V 404 A 1 HETATM 32 O O46 K7V . . . E 4 -15.104 -20.302 -1.91 1 105.08 ? O46 K7V 404 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #