data_8T97
#
_model_server_result.job_id            N_Av7goUto3TJsVBxjg5jA 
_model_server_result.datetime_utc      '2024-11-16 13:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t97 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8T97 
#
_exptl.entry_id    8T97 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T97 
_cell.length_a            63.214 
_cell.length_b            103.123 
_cell.length_c            103.846 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T97 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 215 A ASP 231 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc2 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc3 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 C MG MG . A MG 402 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8T97 
_atom_sites.fract_transf_matrix[1][1]    0.015819 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 MG A 1 402 501 MG MG . 
D 4 KGN A 1 403 601 KGN S6P . 
E 5 PO4 A 1 404 701 PO4 PO4 . 
F 6 HOH A 1 501 34 HOH HOH . 
F 6 HOH A 2 502 23 HOH HOH . 
F 6 HOH A 3 503 37 HOH HOH . 
F 6 HOH A 4 504 39 HOH HOH . 
F 6 HOH A 5 505 33 HOH HOH . 
F 6 HOH A 6 506 64 HOH HOH . 
F 6 HOH A 7 507 55 HOH HOH . 
F 6 HOH A 8 508 19 HOH HOH . 
F 6 HOH A 9 509 27 HOH HOH . 
F 6 HOH A 10 510 11 HOH HOH . 
F 6 HOH A 11 511 35 HOH HOH . 
F 6 HOH A 12 512 63 HOH HOH . 
F 6 HOH A 13 513 17 HOH HOH . 
F 6 HOH A 14 514 13 HOH HOH . 
F 6 HOH A 15 515 3 HOH HOH . 
F 6 HOH A 16 516 59 HOH HOH . 
F 6 HOH A 17 517 57 HOH HOH . 
F 6 HOH A 18 518 12 HOH HOH . 
F 6 HOH A 19 519 22 HOH HOH . 
F 6 HOH A 20 520 10 HOH HOH . 
F 6 HOH A 21 521 1 HOH HOH . 
F 6 HOH A 22 522 5 HOH HOH . 
F 6 HOH A 23 523 15 HOH HOH . 
F 6 HOH A 24 524 21 HOH HOH . 
F 6 HOH A 25 525 58 HOH HOH . 
F 6 HOH A 26 526 46 HOH HOH . 
F 6 HOH A 27 527 50 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 14 HOH HOH . 
F 6 HOH A 30 530 7 HOH HOH . 
F 6 HOH A 31 531 47 HOH HOH . 
F 6 HOH A 32 532 36 HOH HOH . 
F 6 HOH A 33 533 61 HOH HOH . 
F 6 HOH A 34 534 6 HOH HOH . 
F 6 HOH A 35 535 2 HOH HOH . 
F 6 HOH A 36 536 8 HOH HOH . 
F 6 HOH A 37 537 53 HOH HOH . 
F 6 HOH A 38 538 30 HOH HOH . 
F 6 HOH A 39 539 20 HOH HOH . 
F 6 HOH A 40 540 4 HOH HOH . 
F 6 HOH A 41 541 29 HOH HOH . 
F 6 HOH A 42 542 18 HOH HOH . 
F 6 HOH A 43 543 51 HOH HOH . 
F 6 HOH A 44 544 16 HOH HOH . 
F 6 HOH A 45 545 9 HOH HOH . 
F 6 HOH A 46 546 25 HOH HOH . 
F 6 HOH A 47 547 54 HOH HOH . 
F 6 HOH A 48 548 56 HOH HOH . 
F 6 HOH A 49 549 38 HOH HOH . 
F 6 HOH A 50 550 49 HOH HOH . 
F 6 HOH A 51 551 52 HOH HOH . 
F 6 HOH A 52 552 26 HOH HOH . 
F 6 HOH A 53 553 65 HOH HOH . 
F 6 HOH A 54 554 44 HOH HOH . 
F 6 HOH A 55 555 48 HOH HOH . 
F 6 HOH A 56 556 24 HOH HOH . 
F 6 HOH A 57 557 66 HOH HOH . 
F 6 HOH A 58 558 42 HOH HOH . 
F 6 HOH A 59 559 43 HOH HOH . 
F 6 HOH A 60 560 40 HOH HOH . 
F 6 HOH A 61 561 31 HOH HOH . 
F 6 HOH A 62 562 62 HOH HOH . 
F 6 HOH A 63 563 32 HOH HOH . 
F 6 HOH A 64 564 67 HOH HOH . 
F 6 HOH A 65 565 41 HOH HOH . 
F 6 HOH A 66 566 45 HOH HOH . 
F 6 HOH A 67 567 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -20.297 -19.072 -1.205 1 59 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -20.438 -20.299 -2.075 1 66.34 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -20.464 -19.414 0.25 1 66.79 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -19.008 -18.301 -1.502 1 59.06 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -22.339 -17.775 -2.97 1 53.52 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -22.312 -18.935 -3.926 1 52.72 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -21.854 -16.448 -3.474 1 53.46 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -21.556 -18.093 -1.587 1 58.24 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -23.841 -17.627 -2.433 1 50.81 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -24.416 -18.63 -1.573 1 45.94 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -25.922 -18.587 -1.686 1 44.31 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -26.408 -17.247 -1.417 1 43.53 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -26.515 -18.964 -3.049 1 43.1 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -26.716 -20.371 -3.119 1 42.19 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -27.826 -18.167 -3.059 1 42.65 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -28.875 -18.816 -2.369 1 36.15 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -27.446 -16.889 -2.309 1 40.83 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -26.996 -15.729 -3.096 1 38.97 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -25.703 -15.36 -3.423 1 38.09 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -25.61 -14.2 -4.036 1 35.58 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -26.92 -13.731 -4.071 1 36.05 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -27.494 -12.528 -4.552 1 33.6 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -26.812 -11.51 -5.081 1 30.56 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -28.822 -12.368 -4.367 1 31.73 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -29.52 -13.356 -3.789 1 35.5 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -29.105 -14.53 -3.321 1 34.79 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -27.776 -14.658 -3.481 1 37.67 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           27 
#