data_8T9Y # _model_server_result.job_id uXPcdNgG_IvTf2Gbv8PIpw _model_server_result.datetime_utc '2024-10-19 10:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8T9Y # _exptl.entry_id 8T9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T9Y _cell.length_a 73.565 _cell.length_b 73.565 _cell.length_c 207.235 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 98 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 24 L CYS 23 1_555 B SG CYS 89 L CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 B SG CYS 135 L CYS 152 1_555 B SG CYS 195 L CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 C SG CYS 25 H CYS 23 1_555 C SG CYS 99 H CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf5 C SG CYS 157 H CYS 164 1_555 C SG CYS 213 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 8T9Y _atom_sites.fract_transf_matrix[1][1] 0.013593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG L 1 301 1 PEG PEG . E 4 PEG L 1 302 2 PEG PEG . F 5 HOH A 1 201 24 HOH HOH . G 5 HOH L 1 401 10 HOH HOH . G 5 HOH L 2 402 9 HOH HOH . G 5 HOH L 3 403 15 HOH HOH . G 5 HOH L 4 404 19 HOH HOH . G 5 HOH L 5 405 1 HOH HOH . G 5 HOH L 6 406 16 HOH HOH . G 5 HOH L 7 407 36 HOH HOH . G 5 HOH L 8 408 33 HOH HOH . G 5 HOH L 9 409 14 HOH HOH . G 5 HOH L 10 410 6 HOH HOH . G 5 HOH L 11 411 17 HOH HOH . G 5 HOH L 12 412 37 HOH HOH . G 5 HOH L 13 413 20 HOH HOH . G 5 HOH L 14 414 25 HOH HOH . G 5 HOH L 15 415 18 HOH HOH . G 5 HOH L 16 416 26 HOH HOH . G 5 HOH L 17 417 8 HOH HOH . G 5 HOH L 18 418 2 HOH HOH . G 5 HOH L 19 419 3 HOH HOH . G 5 HOH L 20 420 7 HOH HOH . G 5 HOH L 21 421 11 HOH HOH . H 5 HOH H 1 301 21 HOH HOH . H 5 HOH H 2 302 34 HOH HOH . H 5 HOH H 3 303 5 HOH HOH . H 5 HOH H 4 304 35 HOH HOH . H 5 HOH H 5 305 32 HOH HOH . H 5 HOH H 6 306 4 HOH HOH . H 5 HOH H 7 307 27 HOH HOH . H 5 HOH H 8 308 29 HOH HOH . H 5 HOH H 9 309 13 HOH HOH . H 5 HOH H 10 310 30 HOH HOH . H 5 HOH H 11 311 12 HOH HOH . H 5 HOH H 12 312 31 HOH HOH . H 5 HOH H 13 313 22 HOH HOH . H 5 HOH H 14 314 28 HOH HOH . H 5 HOH H 15 315 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 -12.325 13.495 1.814 1 106.12 ? C1 PEG 301 L 1 HETATM 2 O O1 PEG . . . D 4 -12.406 12.09 1.963 1 101.08 ? O1 PEG 301 L 1 HETATM 3 C C2 PEG . . . D 4 -12.773 13.948 0.459 1 111.76 ? C2 PEG 301 L 1 HETATM 4 O O2 PEG . . . D 4 -14.194 13.967 0.4 1 115.01 ? O2 PEG 301 L 1 HETATM 5 C C3 PEG . . . D 4 -14.708 15.175 -0.147 1 113.86 ? C3 PEG 301 L 1 HETATM 6 C C4 PEG . . . D 4 -15.967 15.561 0.564 1 111.12 ? C4 PEG 301 L 1 HETATM 7 O O4 PEG . . . D 4 -16.888 16.207 -0.292 1 110.36 ? O4 PEG 301 L 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #