data_8TA9 # _model_server_result.job_id dhJQWHXhkjj5lWmcKQG4TA _model_server_result.datetime_utc '2024-11-29 02:51:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ta9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8TA9 # _exptl.entry_id 8TA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.324 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TA9 _cell.length_a 68.395 _cell.length_b 68.395 _cell.length_c 58.132 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D N7 DG 1 D DG 10 1_555 G CO CO . D CO 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 3 1_555 D N3 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 3 1_555 D O2 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 3 1_555 D N4 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 4 A DA 4 1_555 D N3 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 4 A DA 4 1_555 D O4 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 5 A DA 5 1_555 D O4 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 6 A DT 6 1_555 D N1 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 6 A DT 6 1_555 D N6 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 7 A DT 7 1_555 D N1 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 7 A DT 7 1_555 D N6 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 8 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 8 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 8 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 10 A DT 10 1_555 B N1 DA 6 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 10 A DT 10 1_555 B N6 DA 6 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 11 A DG 11 1_555 B N3 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 11 A DG 11 1_555 B O2 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 11 A DG 11 1_555 B N4 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 12 A DA 12 1_555 B N3 DT 4 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 12 A DA 12 1_555 B O4 DT 4 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 13 A DC 13 1_555 B N1 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 13 A DC 13 1_555 B O6 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 13 A DC 13 1_555 B N2 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 A DG 14 1_555 B N3 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 A DG 14 1_555 B O2 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 A DG 14 1_555 B N4 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DG 15 A DG 15 1_555 B N3 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N2 DG 15 A DG 15 1_555 B O2 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O6 DG 15 A DG 15 1_555 B N4 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N1 DA 16 A DA 16 1_555 C N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N6 DA 16 A DA 16 1_555 C O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DA 17 A DA 17 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N6 DA 17 A DA 17 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 DC 18 A DC 18 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 DC 18 A DC 18 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 DC 18 A DC 18 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 DT 19 A DT 19 1_555 C N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O4 DT 19 A DT 19 1_555 C N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N3 DC 20 A DC 20 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N4 DC 20 A DC 20 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O2 DC 20 A DC 20 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N1 DA 21 A DA 21 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N6 DA 21 A DA 21 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H15 N5' _chem_comp.formula_weight 277.324 _chem_comp.id DAP _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DAP sing 39 n y N1 C8 DAP sing 40 n y N1 HN1 DAP sing 41 n n C2 C3 DAP doub 42 n y C2 C1' DAP sing 43 n y C3 C9 DAP sing 44 n y C3 H3 DAP sing 45 n n C4 C5 DAP doub 46 n y C4 C9 DAP sing 47 n y C4 H4 DAP sing 48 n n C5 C6 DAP sing 49 n y C5 H5 DAP sing 50 n n C6 C7 DAP doub 51 n y C6 C10 DAP sing 52 n n C7 C8 DAP sing 53 n y C7 H7 DAP sing 54 n n C8 C9 DAP doub 55 n y C10 N2 DAP doub 56 n n C10 N3 DAP sing 57 n n N2 HN2 DAP sing 58 n n N3 HN31 DAP sing 59 n n N3 HN32 DAP sing 60 n n C1' C2' DAP doub 61 n y C1' C6' DAP sing 62 n y C2' C3' DAP sing 63 n y C2' H2' DAP sing 64 n n C3' C4' DAP doub 65 n y C3' H3' DAP sing 66 n n C4' C5' DAP sing 67 n y C4' C11 DAP sing 68 n n C5' C6' DAP doub 69 n y C5' H5' DAP sing 70 n n C6' H6' DAP sing 71 n n C11 N4 DAP doub 72 n n C11 N5 DAP sing 73 n n N4 HN4 DAP sing 74 n n N5 HN51 DAP sing 75 n n N5 HN52 DAP sing 76 n n # _atom_sites.entry_id 8TA9 _atom_sites.fract_transf_matrix[1][1] 0.014621 _atom_sites.fract_transf_matrix[1][2] 0.008441 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CO A 1 101 1 CO CO . F 6 DAP D 1 101 101 DAP DAP . G 5 CO D 1 102 2 CO CO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DAP . . . F 6 34.291 -44.469 6.418 1 131.3 ? N1 DAP 101 D 1 HETATM 2 C C2 DAP . . . F 6 33.353 -45.455 6.691 1 124.61 ? C2 DAP 101 D 1 HETATM 3 C C3 DAP . . . F 6 32.674 -45.102 7.83 1 116.23 ? C3 DAP 101 D 1 HETATM 4 C C4 DAP . . . F 6 32.948 -42.986 9.363 1 132.83 ? C4 DAP 101 D 1 HETATM 5 C C5 DAP . . . F 6 33.682 -41.818 9.49 1 129.19 ? C5 DAP 101 D 1 HETATM 6 C C6 DAP . . . F 6 34.676 -41.469 8.562 1 136.73 ? C6 DAP 101 D 1 HETATM 7 C C7 DAP . . . F 6 34.942 -42.312 7.506 1 132.44 ? C7 DAP 101 D 1 HETATM 8 C C8 DAP . . . F 6 34.209 -43.48 7.369 1 128.85 ? C8 DAP 101 D 1 HETATM 9 C C9 DAP . . . F 6 33.198 -43.851 8.283 1 125.69 ? C9 DAP 101 D 1 HETATM 10 C C10 DAP . . . F 6 35.481 -40.219 8.68 1 143.66 ? C10 DAP 101 D 1 HETATM 11 N N2 DAP . . . F 6 34.856 -39.027 8.589 1 124.14 ? N2 DAP 101 D 1 HETATM 12 N N3 DAP . . . F 6 36.765 -40.256 8.811 1 154.47 ? N3 DAP 101 D 1 HETATM 13 C C1' DAP . . . F 6 33.275 -46.628 5.811 1 120.31 ? C1' DAP 101 D 1 HETATM 14 C C2' DAP . . . F 6 34.37 -46.948 5.012 1 114.8 ? C2' DAP 101 D 1 HETATM 15 C C3' DAP . . . F 6 34.349 -48.035 4.157 1 122.21 ? C3' DAP 101 D 1 HETATM 16 C C4' DAP . . . F 6 33.24 -48.864 4.076 1 118.42 ? C4' DAP 101 D 1 HETATM 17 C C5' DAP . . . F 6 32.134 -48.548 4.868 1 123.91 ? C5' DAP 101 D 1 HETATM 18 C C6' DAP . . . F 6 32.15 -47.448 5.726 1 122.1 ? C6' DAP 101 D 1 HETATM 19 C C11 DAP . . . F 6 33.264 -50.032 3.146 1 108.96 ? C11 DAP 101 D 1 HETATM 20 N N4 DAP . . . F 6 34.453 -50.42 2.627 1 105.41 ? N4 DAP 101 D 1 HETATM 21 N N5 DAP . . . F 6 32.244 -50.69 2.756 1 104.69 ? N5 DAP 101 D 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #