data_8TAP # _model_server_result.job_id QnG2a6Bq3VHolglSOtLWQA _model_server_result.datetime_utc '2024-12-02 16:30:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8TAP # _exptl.entry_id 8TAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TAP _cell.length_a 68.64 _cell.length_b 68.64 _cell.length_c 56.538 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 3 1_555 D N3 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 3 1_555 D O2 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 3 1_555 D N4 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 A DC 4 1_555 D N1 DG 6 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 A DC 4 1_555 D O6 DG 6 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 A DC 4 1_555 D N2 DG 6 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 A DA 5 1_555 D O4 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 6 A DG 6 1_555 D N3 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 6 A DG 6 1_555 D O2 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 6 A DG 6 1_555 D N4 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 7 A DA 7 1_555 D N3 DT 3 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 7 A DA 7 1_555 D O4 DT 3 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 8 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 8 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 8 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 10 A DT 10 1_555 B N1 DA 6 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 10 A DT 10 1_555 B N6 DA 6 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 A DG 11 1_555 B N3 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 A DG 11 1_555 B O2 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 A DG 11 1_555 B N4 DC 5 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DA 12 A DA 12 1_555 B N3 DT 4 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 DA 12 A DA 12 1_555 B O4 DT 4 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 13 A DC 13 1_555 B N1 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 13 A DC 13 1_555 B O6 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 13 A DC 13 1_555 B N2 DG 3 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 A DG 14 1_555 B N3 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 A DG 14 1_555 B O2 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 A DG 14 1_555 B N4 DC 2 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DG 15 A DG 15 1_555 B N3 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N2 DG 15 A DG 15 1_555 B O2 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 DG 15 A DG 15 1_555 B N4 DC 1 B DC 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DA 16 A DA 16 1_555 C N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N6 DA 16 A DA 16 1_555 C O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N1 DA 17 A DA 17 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N6 DA 17 A DA 17 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N1 DA 18 A DA 18 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N6 DA 18 A DA 18 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N3 DT 19 A DT 19 1_555 C N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O4 DT 19 A DT 19 1_555 C N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N3 DT 20 A DT 20 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O4 DT 20 A DT 20 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N1 DA 21 A DA 21 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N6 DA 21 A DA 21 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 152 n n C1 N2 NT sing 153 n n C1 N3 NT sing 154 n n N1 HN1 NT sing 155 n n N2 HN21 NT sing 156 n n N2 HN22 NT sing 157 n n N3 C2 NT sing 158 n n N3 HN3 NT sing 159 n n C2 C3 NT sing 160 n n C2 H21 NT sing 161 n n C2 H22 NT sing 162 n n C3 O1 NT doub 163 n n C3 N4 NT sing 164 n n N4 C4 NT sing 165 n n N4 HN4 NT sing 166 n n C4 C5 NT sing 167 n y C4 C7 NT doub 168 n y C5 C6 NT doub 169 n y C5 H5 NT sing 170 n n C6 N5 NT sing 171 n y C6 C9 NT sing 172 n n N5 C8 NT sing 173 n n N5 C7 NT sing 174 n y C8 H81 NT sing 175 n n C8 H82 NT sing 176 n n C8 H83 NT sing 177 n n C7 H7 NT sing 178 n n C9 O2 NT doub 179 n n C9 N6 NT sing 180 n n N6 C10 NT sing 181 n n N6 HN6 NT sing 182 n n C10 C11 NT sing 183 n y C10 C13 NT doub 184 n y C11 C12 NT doub 185 n y C11 H11 NT sing 186 n n C12 N7 NT sing 187 n y C12 C15 NT sing 188 n n N7 C14 NT sing 189 n n N7 C13 NT sing 190 n y C14 H141 NT sing 191 n n C14 H142 NT sing 192 n n C14 H143 NT sing 193 n n C13 H13 NT sing 194 n n C15 O3 NT doub 195 n n C15 N8 NT sing 196 n n N8 C16 NT sing 197 n n N8 HN8 NT sing 198 n n C16 C17 NT sing 199 n n C16 H161 NT sing 200 n n C16 H162 NT sing 201 n n C17 C18 NT sing 202 n n C17 H171 NT sing 203 n n C17 H172 NT sing 204 n n C18 N9 NT doub 205 n n C18 N10 NT sing 206 n n N9 HN9 NT sing 207 n n N10 HN01 NT sing 208 n n N10 HN02 NT sing 209 n n # _atom_sites.entry_id 8TAP _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0.008411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NT C 1 101 1 NT NT . F 6 HOH A 1 101 2 HOH HOH . G 6 HOH D 1 101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . E 5 -12.285 13.087 -12.959 1 91.54 ? C1 NT 101 C 1 HETATM 2 N N1 NT . . . E 5 -11.42 14.052 -13.261 1 99.33 ? N1 NT 101 C 1 HETATM 3 N N2 NT . . . E 5 -12.354 12.632 -11.707 1 89.11 ? N2 NT 101 C 1 HETATM 4 N N3 NT . . . E 5 -13.078 12.571 -13.899 1 84.79 ? N3 NT 101 C 1 HETATM 5 C C2 NT . . . E 5 -13.744 11.307 -13.657 1 81.72 ? C2 NT 101 C 1 HETATM 6 C C3 NT . . . E 5 -14.808 10.966 -14.672 1 85.71 ? C3 NT 101 C 1 HETATM 7 O O1 NT . . . E 5 -14.86 11.634 -15.914 1 84.99 ? O1 NT 101 C 1 HETATM 8 N N4 NT . . . E 5 -15.643 10.003 -14.278 1 90.88 ? N4 NT 101 C 1 HETATM 9 C C4 NT . . . E 5 -16.535 9.321 -15.122 1 90.28 ? C4 NT 101 C 1 HETATM 10 C C5 NT . . . E 5 -17.518 8.437 -14.696 1 88.6 ? C5 NT 101 C 1 HETATM 11 C C6 NT . . . E 5 -18.185 7.97 -15.82 1 90.39 ? C6 NT 101 C 1 HETATM 12 N N5 NT . . . E 5 -17.639 8.564 -16.909 1 93.77 ? N5 NT 101 C 1 HETATM 13 C C8 NT . . . E 5 -18.059 8.357 -18.336 1 103.27 ? C8 NT 101 C 1 HETATM 14 C C7 NT . . . E 5 -16.623 9.394 -16.505 1 87.64 ? C7 NT 101 C 1 HETATM 15 C C9 NT . . . E 5 -19.138 6.807 -15.825 1 94.38 ? C9 NT 101 C 1 HETATM 16 O O2 NT . . . E 5 -19.1 5.901 -16.906 1 85.14 ? O2 NT 101 C 1 HETATM 17 N N6 NT . . . E 5 -19.973 6.672 -14.787 1 104.33 ? N6 NT 101 C 1 HETATM 18 C C10 NT . . . E 5 -20.782 5.54 -14.549 1 107.94 ? C10 NT 101 C 1 HETATM 19 C C11 NT . . . E 5 -21.77 5.438 -13.576 1 106.96 ? C11 NT 101 C 1 HETATM 20 C C12 NT . . . E 5 -22.34 4.168 -13.655 1 109.44 ? C12 NT 101 C 1 HETATM 21 N N7 NT . . . E 5 -21.716 3.499 -14.663 1 107.44 ? N7 NT 101 C 1 HETATM 22 C C14 NT . . . E 5 -21.983 2.095 -15.126 1 106.63 ? C14 NT 101 C 1 HETATM 23 C C13 NT . . . E 5 -20.763 4.319 -15.212 1 108.65 ? C13 NT 101 C 1 HETATM 24 C C15 NT . . . E 5 -23.225 3.584 -12.583 1 114.45 ? C15 NT 101 C 1 HETATM 25 O O3 NT . . . E 5 -23.239 2.198 -12.323 1 115.84 ? O3 NT 101 C 1 HETATM 26 N N8 NT . . . E 5 -23.989 4.398 -11.863 1 115.78 ? N8 NT 101 C 1 HETATM 27 C C16 NT . . . E 5 -24.488 3.971 -10.57 1 114.57 ? C16 NT 101 C 1 HETATM 28 C C17 NT . . . E 5 -25.907 3.425 -10.654 1 118.33 ? C17 NT 101 C 1 HETATM 29 C C18 NT . . . E 5 -26.419 3.197 -9.253 1 130.59 ? C18 NT 101 C 1 HETATM 30 N N9 NT . . . E 5 -27.476 2.406 -9.074 1 135.23 ? N9 NT 101 C 1 HETATM 31 N N10 NT . . . E 5 -25.787 3.795 -8.24 1 125.85 ? N10 NT 101 C 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #