data_8TBO # _model_server_result.job_id 90eiww14OaG4dSeZm-XCUA _model_server_result.datetime_utc '2024-12-03 12:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8TBO # _exptl.entry_id 8TBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TBO _cell.length_a 68.164 _cell.length_b 68.164 _cell.length_c 63.053 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 3 A DC 3 1_555 D N1 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 3 A DC 3 1_555 D O6 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 3 A DC 3 1_555 D N2 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 4 A DA 4 1_555 D N3 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 4 A DA 4 1_555 D O4 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 5 A DA 5 1_555 D O4 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 6 A DT 6 1_555 D N1 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 6 A DT 6 1_555 D N6 DA 4 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 7 A DT 7 1_555 D N1 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 7 A DT 7 1_555 D N6 DA 3 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 8 A DG 8 1_555 D N3 DC 2 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 8 A DG 8 1_555 D O2 DC 2 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 8 A DG 8 1_555 D N4 DC 2 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 10 A DT 10 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 10 A DT 10 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 11 A DG 11 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 11 A DG 11 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 11 A DG 11 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 12 A DA 12 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 12 A DA 12 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 13 A DC 13 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 13 A DC 13 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 13 A DC 13 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 A DG 14 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 A DG 14 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 A DG 14 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DA 15 A DA 15 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N6 DA 15 A DA 15 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DC 16 A DC 16 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 DC 16 A DC 16 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 DC 16 A DC 16 1_555 C N2 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DA 17 A DA 17 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N6 DA 17 A DA 17 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 DC 18 A DC 18 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 DC 18 A DC 18 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 DC 18 A DC 18 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 DT 19 A DT 19 1_555 C N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O4 DT 19 A DT 19 1_555 C N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N3 DC 20 A DC 20 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N4 DC 20 A DC 20 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O2 DC 20 A DC 20 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N1 DA 21 A DA 21 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N6 DA 21 A DA 21 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 162 n n C1 N2 NT sing 163 n n C1 N3 NT sing 164 n n N1 HN1 NT sing 165 n n N2 HN21 NT sing 166 n n N2 HN22 NT sing 167 n n N3 C2 NT sing 168 n n N3 HN3 NT sing 169 n n C2 C3 NT sing 170 n n C2 H21 NT sing 171 n n C2 H22 NT sing 172 n n C3 O1 NT doub 173 n n C3 N4 NT sing 174 n n N4 C4 NT sing 175 n n N4 HN4 NT sing 176 n n C4 C5 NT sing 177 n y C4 C7 NT doub 178 n y C5 C6 NT doub 179 n y C5 H5 NT sing 180 n n C6 N5 NT sing 181 n y C6 C9 NT sing 182 n n N5 C8 NT sing 183 n n N5 C7 NT sing 184 n y C8 H81 NT sing 185 n n C8 H82 NT sing 186 n n C8 H83 NT sing 187 n n C7 H7 NT sing 188 n n C9 O2 NT doub 189 n n C9 N6 NT sing 190 n n N6 C10 NT sing 191 n n N6 HN6 NT sing 192 n n C10 C11 NT sing 193 n y C10 C13 NT doub 194 n y C11 C12 NT doub 195 n y C11 H11 NT sing 196 n n C12 N7 NT sing 197 n y C12 C15 NT sing 198 n n N7 C14 NT sing 199 n n N7 C13 NT sing 200 n y C14 H141 NT sing 201 n n C14 H142 NT sing 202 n n C14 H143 NT sing 203 n n C13 H13 NT sing 204 n n C15 O3 NT doub 205 n n C15 N8 NT sing 206 n n N8 C16 NT sing 207 n n N8 HN8 NT sing 208 n n C16 C17 NT sing 209 n n C16 H161 NT sing 210 n n C16 H162 NT sing 211 n n C17 C18 NT sing 212 n n C17 H171 NT sing 213 n n C17 H172 NT sing 214 n n C18 N9 NT doub 215 n n C18 N10 NT sing 216 n n N9 HN9 NT sing 217 n n N10 HN01 NT sing 218 n n N10 HN02 NT sing 219 n n # _atom_sites.entry_id 8TBO _atom_sites.fract_transf_matrix[1][1] 0.014671 _atom_sites.fract_transf_matrix[1][2] 0.00847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NT A 1 101 25 NT NT . F 6 CAC B 1 101 3 CAC AS . G 6 CAC C 1 101 1 CAC AS . H 6 CAC C 1 102 8 CAC AS . I 6 CAC D 1 101 6 CAC AS . J 7 HOH A 1 201 2 HOH HOH . J 7 HOH A 2 202 3 HOH HOH . K 7 HOH C 1 201 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . E 5 -37.996 47.813 19.478 1 94.99 ? C1 NT 101 A 1 HETATM 2 N N1 NT . . . E 5 -39.054 47.645 18.678 1 87.81 ? N1 NT 101 A 1 HETATM 3 N N2 NT . . . E 5 -36.971 48.591 19.106 1 91.62 ? N2 NT 101 A 1 HETATM 4 N N3 NT . . . E 5 -37.955 47.186 20.652 1 91.54 ? N3 NT 101 A 1 HETATM 5 C C2 NT . . . E 5 -37.298 45.902 20.731 1 91.28 ? C2 NT 101 A 1 HETATM 6 C C3 NT . . . E 5 -36.53 45.697 22.011 1 90.54 ? C3 NT 101 A 1 HETATM 7 O O1 NT . . . E 5 -35.284 46.324 22.212 1 83.38 ? O1 NT 101 A 1 HETATM 8 N N4 NT . . . E 5 -37.119 44.89 22.889 1 91.17 ? N4 NT 101 A 1 HETATM 9 C C4 NT . . . E 5 -36.382 43.973 23.645 1 90.14 ? C4 NT 101 A 1 HETATM 10 C C5 NT . . . E 5 -36.784 42.698 24.046 1 80.38 ? C5 NT 101 A 1 HETATM 11 C C6 NT . . . E 5 -35.744 42.162 24.799 1 85.41 ? C6 NT 101 A 1 HETATM 12 N N5 NT . . . E 5 -34.733 43.079 24.845 1 96.53 ? N5 NT 101 A 1 HETATM 13 C C8 NT . . . E 5 -33.405 42.938 25.535 1 98.74 ? C8 NT 101 A 1 HETATM 14 C C7 NT . . . E 5 -35.108 44.195 24.147 1 90.51 ? C7 NT 101 A 1 HETATM 15 C C9 NT . . . E 5 -35.793 40.851 25.534 1 82.74 ? C9 NT 101 A 1 HETATM 16 O O2 NT . . . E 5 -35.212 40.742 26.813 1 100.36 ? O2 NT 101 A 1 HETATM 17 N N6 NT . . . E 5 -36.384 39.816 24.953 1 80.41 ? N6 NT 101 A 1 HETATM 18 C C10 NT . . . E 5 -36.734 38.625 25.622 1 85.76 ? C10 NT 101 A 1 HETATM 19 C C11 NT . . . E 5 -37.172 37.471 24.987 1 79.93 ? C11 NT 101 A 1 HETATM 20 C C12 NT . . . E 5 -37.471 36.503 25.934 1 80.97 ? C12 NT 101 A 1 HETATM 21 N N7 NT . . . E 5 -37.169 37.046 27.144 1 90.08 ? N7 NT 101 A 1 HETATM 22 C C14 NT . . . E 5 -37.327 36.35 28.462 1 89.95 ? C14 NT 101 A 1 HETATM 23 C C13 NT . . . E 5 -36.737 38.344 26.984 1 87.54 ? C13 NT 101 A 1 HETATM 24 C C15 NT . . . E 5 -38.569 35.49 25.697 1 76.47 ? C15 NT 101 A 1 HETATM 25 O O3 NT . . . E 5 -39.919 35.876 25.763 1 89.12 ? O3 NT 101 A 1 HETATM 26 N N8 NT . . . E 5 -38.302 34.223 25.425 1 84.19 ? N8 NT 101 A 1 HETATM 27 C C16 NT . . . E 5 -39.3 33.207 25.686 1 74.77 ? C16 NT 101 A 1 HETATM 28 C C17 NT . . . E 5 -40.145 32.927 24.457 1 69.03 ? C17 NT 101 A 1 HETATM 29 C C18 NT . . . E 5 -40.965 31.689 24.723 1 79.4 ? C18 NT 101 A 1 HETATM 30 N N9 NT . . . E 5 -41.114 31.313 25.992 1 80.35 ? N9 NT 101 A 1 HETATM 31 N N10 NT . . . E 5 -41.495 31.013 23.693 1 77.88 ? N10 NT 101 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 197 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #