data_8TBQ
#
_model_server_result.job_id            DmiV-j9HzN1XnSenFMiVjQ 
_model_server_result.datetime_utc      '2025-01-14 22:37:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":202}' 
#
_entry.id    8TBQ 
#
_exptl.entry_id    8TBQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.121 
_cell.angle_gamma         90 
_cell.entry_id            8TBQ 
_cell.length_a            207.659 
_cell.length_b            39.512 
_cell.length_c            177.979 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,L,M,N 1 1 
D,E,F,J,K,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 149 H CYS 149 1_555 A SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 C SG CYS 12 P CYS 44 1_555 C SG CYS 146 P CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf6 C SG CYS 22 P CYS 54 1_555 C SG CYS 114 P CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 C SG CYS 51 P CYS 83 1_555 C SG CYS 113 P CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf9 D SG CYS 149 A CYS 149 1_555 D SG CYS 205 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 E SG CYS 23 B CYS 23 1_555 E SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf11 E SG CYS 135 B CYS 135 1_555 E SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf12 F SG CYS 12 Q CYS 44 1_555 F SG CYS 146 Q CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf13 F SG CYS 22 Q CYS 54 1_555 F SG CYS 114 Q CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf14 F SG CYS 51 Q CYS 83 1_555 F SG CYS 113 Q CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 C ND2 ASN 17 P ASN 49 1_555 I C1 NAG . P NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 F ND2 ASN 17 Q ASN 49 1_555 J C1 NAG . Q NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 F ND2 ASN 103 Q ASN 135 1_555 K C1 NAG . Q NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TBQ 
_atom_sites.fract_transf_matrix[1][1]    0.004816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002466 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO H 1 301 1 EDO EDO . 
H 4 EDO H 1 302 2 EDO EDO . 
I 5 NAG P 1 201 201 NAG NAG . 
J 5 NAG Q 1 201 201 NAG NAG . 
K 5 NAG Q 1 202 301 NAG NAG . 
L 6 HOH H 1 401 37 HOH HOH . 
L 6 HOH H 2 402 1 HOH HOH . 
L 6 HOH H 3 403 29 HOH HOH . 
L 6 HOH H 4 404 7 HOH HOH . 
L 6 HOH H 5 405 30 HOH HOH . 
L 6 HOH H 6 406 34 HOH HOH . 
L 6 HOH H 7 407 10 HOH HOH . 
L 6 HOH H 8 408 5 HOH HOH . 
L 6 HOH H 9 409 35 HOH HOH . 
L 6 HOH H 10 410 8 HOH HOH . 
L 6 HOH H 11 411 3 HOH HOH . 
L 6 HOH H 12 412 27 HOH HOH . 
L 6 HOH H 13 413 32 HOH HOH . 
L 6 HOH H 14 414 11 HOH HOH . 
L 6 HOH H 15 415 2 HOH HOH . 
L 6 HOH H 16 416 6 HOH HOH . 
L 6 HOH H 17 417 31 HOH HOH . 
L 6 HOH H 18 418 33 HOH HOH . 
L 6 HOH H 19 419 36 HOH HOH . 
L 6 HOH H 20 420 4 HOH HOH . 
M 6 HOH L 1 301 20 HOH HOH . 
M 6 HOH L 2 302 26 HOH HOH . 
M 6 HOH L 3 303 12 HOH HOH . 
M 6 HOH L 4 304 18 HOH HOH . 
M 6 HOH L 5 305 15 HOH HOH . 
M 6 HOH L 6 306 9 HOH HOH . 
M 6 HOH L 7 307 41 HOH HOH . 
M 6 HOH L 8 308 19 HOH HOH . 
M 6 HOH L 9 309 42 HOH HOH . 
M 6 HOH L 10 310 43 HOH HOH . 
M 6 HOH L 11 311 16 HOH HOH . 
M 6 HOH L 12 312 13 HOH HOH . 
M 6 HOH L 13 313 14 HOH HOH . 
M 6 HOH L 14 314 17 HOH HOH . 
M 6 HOH L 15 315 39 HOH HOH . 
M 6 HOH L 16 316 38 HOH HOH . 
N 6 HOH P 1 301 28 HOH HOH . 
N 6 HOH P 2 302 22 HOH HOH . 
N 6 HOH P 3 303 21 HOH HOH . 
N 6 HOH P 4 304 23 HOH HOH . 
O 6 HOH A 1 301 45 HOH HOH . 
O 6 HOH A 2 302 24 HOH HOH . 
O 6 HOH A 3 303 44 HOH HOH . 
O 6 HOH A 4 304 25 HOH HOH . 
P 6 HOH B 1 301 46 HOH HOH . 
P 6 HOH B 2 302 40 HOH HOH . 
Q 6 HOH Q 1 301 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 5 -17.256 -2.595 28.128 1 77.06 0 C1 NAG 202 Q 1 
HETATM 2 C C2 NAG . . . K 5 -18.684 -2.3 28.597 1 80.16 0 C2 NAG 202 Q 1 
HETATM 3 C C3 NAG . . . K 5 -18.864 -0.792 28.766 1 77.48 0 C3 NAG 202 Q 1 
HETATM 4 C C4 NAG . . . K 5 -17.778 -0.2 29.661 1 78.18 0 C4 NAG 202 Q 1 
HETATM 5 C C5 NAG . . . K 5 -16.396 -0.605 29.145 1 77.94 0 C5 NAG 202 Q 1 
HETATM 6 C C6 NAG . . . K 5 -15.252 -0.15 30.035 1 76.45 0 C6 NAG 202 Q 1 
HETATM 7 C C7 NAG . . . K 5 -20.186 -4.09 27.779 1 86.02 0 C7 NAG 202 Q 1 
HETATM 8 C C8 NAG . . . K 5 -21.233 -4.46 26.769 1 86.05 0 C8 NAG 202 Q 1 
HETATM 9 N N2 NAG . . . K 5 -19.697 -2.842 27.71 1 84.05 0 N2 NAG 202 Q 1 
HETATM 10 O O3 NAG . . . K 5 -20.156 -0.536 29.299 1 73.86 0 O3 NAG 202 Q 1 
HETATM 11 O O4 NAG . . . K 5 -17.884 1.221 29.652 1 78.94 0 O4 NAG 202 Q 1 
HETATM 12 O O5 NAG . . . K 5 -16.324 -2.044 29.049 1 77.73 0 O5 NAG 202 Q 1 
HETATM 13 O O6 NAG . . . K 5 -15.391 -0.59 31.389 1 74.53 0 O6 NAG 202 Q 1 
HETATM 14 O O7 NAG . . . K 5 -19.807 -4.894 28.626 1 86.41 0 O7 NAG 202 Q 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#