data_8TBR # _model_server_result.job_id vywYosCBPA0EPs6rrakxdg _model_server_result.datetime_utc '2024-10-19 02:23:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8TBR # _exptl.entry_id 8TBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.16 _cell.angle_gamma 90 _cell.entry_id 8TBR _cell.length_a 28.606 _cell.length_b 66.332 _cell.length_c 43.973 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 293 n n PA O2A NAP sing 294 n n PA O5B NAP sing 295 n n PA O3 NAP sing 296 n n O2A HOA2 NAP sing 297 n n O5B C5B NAP sing 298 n n C5B C4B NAP sing 299 n n C5B H51A NAP sing 300 n n C5B H52A NAP sing 301 n n C4B O4B NAP sing 302 n n C4B C3B NAP sing 303 n n C4B H4B NAP sing 304 n n O4B C1B NAP sing 305 n n C3B O3B NAP sing 306 n n C3B C2B NAP sing 307 n n C3B H3B NAP sing 308 n n O3B HO3A NAP sing 309 n n C2B O2B NAP sing 310 n n C2B C1B NAP sing 311 n n C2B H2B NAP sing 312 n n O2B P2B NAP sing 313 n n C1B N9A NAP sing 314 n n C1B H1B NAP sing 315 n n N9A C8A NAP sing 316 n y N9A C4A NAP sing 317 n y C8A N7A NAP doub 318 n y C8A H8A NAP sing 319 n n N7A C5A NAP sing 320 n y C5A C6A NAP sing 321 n y C5A C4A NAP doub 322 n y C6A N6A NAP sing 323 n n C6A N1A NAP doub 324 n y N6A H61A NAP sing 325 n n N6A H62A NAP sing 326 n n N1A C2A NAP sing 327 n y C2A N3A NAP doub 328 n y C2A H2A NAP sing 329 n n N3A C4A NAP sing 330 n y O3 PN NAP sing 331 n n PN O1N NAP doub 332 n n PN O2N NAP sing 333 n n PN O5D NAP sing 334 n n O5D C5D NAP sing 335 n n C5D C4D NAP sing 336 n n C5D H51N NAP sing 337 n n C5D H52N NAP sing 338 n n C4D O4D NAP sing 339 n n C4D C3D NAP sing 340 n n C4D H4D NAP sing 341 n n O4D C1D NAP sing 342 n n C3D O3D NAP sing 343 n n C3D C2D NAP sing 344 n n C3D H3D NAP sing 345 n n O3D HO3N NAP sing 346 n n C2D O2D NAP sing 347 n n C2D C1D NAP sing 348 n n C2D H2D NAP sing 349 n n O2D HO2N NAP sing 350 n n C1D N1N NAP sing 351 n n C1D H1D NAP sing 352 n n N1N C2N NAP sing 353 n y N1N C6N NAP doub 354 n y C2N C3N NAP doub 355 n y C2N H2N NAP sing 356 n n C3N C7N NAP sing 357 n n C3N C4N NAP sing 358 n y C7N O7N NAP doub 359 n n C7N N7N NAP sing 360 n n N7N H71N NAP sing 361 n n N7N H72N NAP sing 362 n n C4N C5N NAP doub 363 n y C4N H4N NAP sing 364 n n C5N C6N NAP sing 365 n y C5N H5N NAP sing 366 n n C6N H6N NAP sing 367 n n P2B O1X NAP doub 368 n n P2B O2X NAP sing 369 n n P2B O3X NAP sing 370 n n O2X HOP2 NAP sing 371 n n O3X HOP3 NAP sing 372 n n # _atom_sites.entry_id 8TBR _atom_sites.fract_transf_matrix[1][1] 0.034958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 202 NAP NAP . C 3 HIJ A 1 202 201 HIJ M58 . D 4 HOH A 1 301 25 HOH HOH . D 4 HOH A 2 302 75 HOH HOH . D 4 HOH A 3 303 71 HOH HOH . D 4 HOH A 4 304 84 HOH HOH . D 4 HOH A 5 305 134 HOH HOH . D 4 HOH A 6 306 45 HOH HOH . D 4 HOH A 7 307 14 HOH HOH . D 4 HOH A 8 308 54 HOH HOH . D 4 HOH A 9 309 39 HOH HOH . D 4 HOH A 10 310 63 HOH HOH . D 4 HOH A 11 311 77 HOH HOH . D 4 HOH A 12 312 96 HOH HOH . D 4 HOH A 13 313 62 HOH HOH . D 4 HOH A 14 314 119 HOH HOH . D 4 HOH A 15 315 61 HOH HOH . D 4 HOH A 16 316 82 HOH HOH . D 4 HOH A 17 317 106 HOH HOH . D 4 HOH A 18 318 23 HOH HOH . D 4 HOH A 19 319 161 HOH HOH . D 4 HOH A 20 320 42 HOH HOH . D 4 HOH A 21 321 48 HOH HOH . D 4 HOH A 22 322 109 HOH HOH . D 4 HOH A 23 323 93 HOH HOH . D 4 HOH A 24 324 15 HOH HOH . D 4 HOH A 25 325 122 HOH HOH . D 4 HOH A 26 326 100 HOH HOH . D 4 HOH A 27 327 52 HOH HOH . D 4 HOH A 28 328 1 HOH HOH . D 4 HOH A 29 329 49 HOH HOH . D 4 HOH A 30 330 16 HOH HOH . D 4 HOH A 31 331 38 HOH HOH . D 4 HOH A 32 332 89 HOH HOH . D 4 HOH A 33 333 20 HOH HOH . D 4 HOH A 34 334 139 HOH HOH . D 4 HOH A 35 335 46 HOH HOH . D 4 HOH A 36 336 44 HOH HOH . D 4 HOH A 37 337 121 HOH HOH . D 4 HOH A 38 338 103 HOH HOH . D 4 HOH A 39 339 68 HOH HOH . D 4 HOH A 40 340 22 HOH HOH . D 4 HOH A 41 341 65 HOH HOH . D 4 HOH A 42 342 95 HOH HOH . D 4 HOH A 43 343 3 HOH HOH . D 4 HOH A 44 344 12 HOH HOH . D 4 HOH A 45 345 11 HOH HOH . D 4 HOH A 46 346 70 HOH HOH . D 4 HOH A 47 347 4 HOH HOH . D 4 HOH A 48 348 19 HOH HOH . D 4 HOH A 49 349 10 HOH HOH . D 4 HOH A 50 350 123 HOH HOH . D 4 HOH A 51 351 33 HOH HOH . D 4 HOH A 52 352 17 HOH HOH . D 4 HOH A 53 353 125 HOH HOH . D 4 HOH A 54 354 80 HOH HOH . D 4 HOH A 55 355 53 HOH HOH . D 4 HOH A 56 356 99 HOH HOH . D 4 HOH A 57 357 55 HOH HOH . D 4 HOH A 58 358 32 HOH HOH . D 4 HOH A 59 359 114 HOH HOH . D 4 HOH A 60 360 31 HOH HOH . D 4 HOH A 61 361 138 HOH HOH . D 4 HOH A 62 362 37 HOH HOH . D 4 HOH A 63 363 116 HOH HOH . D 4 HOH A 64 364 142 HOH HOH . D 4 HOH A 65 365 18 HOH HOH . D 4 HOH A 66 366 78 HOH HOH . D 4 HOH A 67 367 30 HOH HOH . D 4 HOH A 68 368 26 HOH HOH . D 4 HOH A 69 369 159 HOH HOH . D 4 HOH A 70 370 24 HOH HOH . D 4 HOH A 71 371 67 HOH HOH . D 4 HOH A 72 372 104 HOH HOH . D 4 HOH A 73 373 90 HOH HOH . D 4 HOH A 74 374 92 HOH HOH . D 4 HOH A 75 375 8 HOH HOH . D 4 HOH A 76 376 60 HOH HOH . D 4 HOH A 77 377 56 HOH HOH . D 4 HOH A 78 378 87 HOH HOH . D 4 HOH A 79 379 2 HOH HOH . D 4 HOH A 80 380 21 HOH HOH . D 4 HOH A 81 381 156 HOH HOH . D 4 HOH A 82 382 51 HOH HOH . D 4 HOH A 83 383 5 HOH HOH . D 4 HOH A 84 384 36 HOH HOH . D 4 HOH A 85 385 94 HOH HOH . D 4 HOH A 86 386 117 HOH HOH . D 4 HOH A 87 387 73 HOH HOH . D 4 HOH A 88 388 131 HOH HOH . D 4 HOH A 89 389 72 HOH HOH . D 4 HOH A 90 390 102 HOH HOH . D 4 HOH A 91 391 113 HOH HOH . D 4 HOH A 92 392 85 HOH HOH . D 4 HOH A 93 393 155 HOH HOH . D 4 HOH A 94 394 64 HOH HOH . D 4 HOH A 95 395 35 HOH HOH . D 4 HOH A 96 396 126 HOH HOH . D 4 HOH A 97 397 47 HOH HOH . D 4 HOH A 98 398 79 HOH HOH . D 4 HOH A 99 399 43 HOH HOH . D 4 HOH A 100 400 162 HOH HOH . D 4 HOH A 101 401 6 HOH HOH . D 4 HOH A 102 402 13 HOH HOH . D 4 HOH A 103 403 58 HOH HOH . D 4 HOH A 104 404 150 HOH HOH . D 4 HOH A 105 405 66 HOH HOH . D 4 HOH A 106 406 128 HOH HOH . D 4 HOH A 107 407 149 HOH HOH . D 4 HOH A 108 408 59 HOH HOH . D 4 HOH A 109 409 110 HOH HOH . D 4 HOH A 110 410 88 HOH HOH . D 4 HOH A 111 411 118 HOH HOH . D 4 HOH A 112 412 83 HOH HOH . D 4 HOH A 113 413 9 HOH HOH . D 4 HOH A 114 414 145 HOH HOH . D 4 HOH A 115 415 29 HOH HOH . D 4 HOH A 116 416 57 HOH HOH . D 4 HOH A 117 417 7 HOH HOH . D 4 HOH A 118 418 127 HOH HOH . D 4 HOH A 119 419 151 HOH HOH . D 4 HOH A 120 420 76 HOH HOH . D 4 HOH A 121 421 141 HOH HOH . D 4 HOH A 122 422 40 HOH HOH . D 4 HOH A 123 423 74 HOH HOH . D 4 HOH A 124 424 34 HOH HOH . D 4 HOH A 125 425 91 HOH HOH . D 4 HOH A 126 426 164 HOH HOH . D 4 HOH A 127 427 107 HOH HOH . D 4 HOH A 128 428 111 HOH HOH . D 4 HOH A 129 429 112 HOH HOH . D 4 HOH A 130 430 140 HOH HOH . D 4 HOH A 131 431 135 HOH HOH . D 4 HOH A 132 432 101 HOH HOH . D 4 HOH A 133 433 108 HOH HOH . D 4 HOH A 134 434 98 HOH HOH . D 4 HOH A 135 435 160 HOH HOH . D 4 HOH A 136 436 115 HOH HOH . D 4 HOH A 137 437 166 HOH HOH . D 4 HOH A 138 438 124 HOH HOH . D 4 HOH A 139 439 97 HOH HOH . D 4 HOH A 140 440 146 HOH HOH . D 4 HOH A 141 441 28 HOH HOH . D 4 HOH A 142 442 144 HOH HOH . D 4 HOH A 143 443 165 HOH HOH . D 4 HOH A 144 444 27 HOH HOH . D 4 HOH A 145 445 163 HOH HOH . D 4 HOH A 146 446 152 HOH HOH . D 4 HOH A 147 447 41 HOH HOH . D 4 HOH A 148 448 81 HOH HOH . D 4 HOH A 149 449 69 HOH HOH . D 4 HOH A 150 450 129 HOH HOH . D 4 HOH A 151 451 158 HOH HOH . D 4 HOH A 152 452 86 HOH HOH . D 4 HOH A 153 453 136 HOH HOH . D 4 HOH A 154 454 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 8.087 -17.34 12.125 1 8.34 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 8.592 -16.592 10.925 1 8.55 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 6.637 -17.277 12.611 1 7.76 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 8.362 -18.951 11.919 1 9.91 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 9.644 -19.45 11.584 1 10.12 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 9.482 -20.89 11.109 1 5.54 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 8.986 -20.896 9.774 1 9.58 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 10.773 -21.741 11.095 1 8.24 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 11.131 -22.236 12.377 1 10.32 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 10.333 -22.798 10.065 1 11.07 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 9.448 -23.643 10.688 1 9.79 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 9.527 -21.973 9.055 1 10.75 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 10.328 -21.5 7.944 1 12.02 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 11.127 -20.405 7.87 1 14.24 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 11.698 -20.285 6.702 1 11.31 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 11.259 -21.345 5.973 1 11.19 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 11.515 -21.787 4.66 1 16.73 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 12.308 -21.154 3.794 1 17.82 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 10.918 -22.902 4.254 1 13.32 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 10.105 -23.532 5.099 1 11.04 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 9.796 -23.227 6.344 1 10.17 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 10.416 -22.119 6.736 1 10.57 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 9.063 -17.161 13.406 1 10.65 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 9.678 -15.834 14.122 1 9.93 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 10.469 -15.052 13.128 1 10.55 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 10.308 -16.351 15.371 1 11.29 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 8.326 -15.006 14.511 1 12.03 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 7.56 -15.376 15.647 1 12.05 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 7.463 -14.243 16.657 1 9.79 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 6.808 -13.099 16.074 1 11.69 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 6.641 -14.583 17.877 1 10.47 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 7.139 -13.807 18.926 1 12.28 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 5.252 -14.05 17.516 1 10.49 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 4.526 -13.786 18.661 1 12.08 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 5.654 -12.777 16.775 1 9.3 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 4.703 -12.226 15.791 1 6.51 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 4.417 -10.918 15.808 1 7.59 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 3.538 -10.359 14.899 1 6.12 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 3.22 -8.892 14.943 1 8.78 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 2.622 -8.385 14.008 1 9.71 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 3.624 -8.253 16.04 1 7.91 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 3.001 -11.177 13.913 1 10.01 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 3.345 -12.537 13.892 1 9.71 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 4.209 -13.036 14.836 1 10.42 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 10.04 -25.16 11.194 1 8.95 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 10.979 -24.846 12.313 1 10.31 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 8.765 -25.865 11.632 1 8.56 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 10.707 -25.813 9.985 1 9.81 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #