data_8TC2 # _model_server_result.job_id mBFE7w7i_S31AsrSiDCyOg _model_server_result.datetime_utc '2024-12-02 16:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8TC2 # _exptl.entry_id 8TC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TC2 _cell.length_a 68.752 _cell.length_b 68.752 _cell.length_c 59.87 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 2 1_555 D N3 DC 8 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 2 1_555 D O2 DC 8 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 2 1_555 D N4 DC 8 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 A DC 3 1_555 D N1 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 A DC 3 1_555 D O6 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 A DC 3 1_555 D N2 DG 7 D DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 A DA 4 1_555 D N3 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 A DA 4 1_555 D O4 DT 6 D DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 6 A DG 5 1_555 D N3 DC 5 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 6 A DG 5 1_555 D O2 DC 5 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 6 A DG 5 1_555 D N4 DC 5 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 7 A DA 6 1_555 D N3 DT 4 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 7 A DA 6 1_555 D O4 DT 4 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 8 A DC 7 1_555 D N1 DG 3 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 8 A DC 7 1_555 D O6 DG 3 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 8 A DC 7 1_555 D N2 DG 3 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 9 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 9 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 9 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 10 A DT 9 1_555 D N1 DA 1 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 10 A DT 9 1_555 D N6 DA 1 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 A DG 10 1_555 B N3 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 A DG 10 1_555 B O2 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 A DG 10 1_555 B N4 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DA 12 A DA 11 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 DA 12 A DA 11 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 13 A DC 12 1_555 B N1 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 13 A DC 12 1_555 B O6 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 13 A DC 12 1_555 B N2 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 A DG 13 1_555 B N3 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 A DG 13 1_555 B O2 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 A DG 13 1_555 B N4 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DA 15 A DA 14 1_555 B N3 DT 1 B DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N6 DA 15 A DA 14 1_555 B O4 DT 1 B DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N3 DC 16 A DC 15 1_555 C N1 DG 8 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N4 DC 16 A DC 15 1_555 C O6 DG 8 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O2 DC 16 A DC 15 1_555 C N2 DG 8 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N1 DA 17 A DA 16 1_555 C N3 DT 7 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N6 DA 17 A DA 16 1_555 C O4 DT 7 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N1 DA 18 A DA 17 1_555 C N3 DT 6 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N6 DA 18 A DA 17 1_555 C O4 DT 6 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N3 DT 19 A DT 18 1_555 C N1 DA 5 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O4 DT 19 A DT 18 1_555 C N6 DA 5 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N3 DT 20 A DT 19 1_555 C N1 DA 4 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O4 DT 20 A DT 19 1_555 C N6 DA 4 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N1 DA 21 A DA 20 1_555 C N3 DT 3 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N6 DA 21 A DA 20 1_555 C O4 DT 3 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 150 n n C1 N2 NT sing 151 n n C1 N3 NT sing 152 n n N1 HN1 NT sing 153 n n N2 HN21 NT sing 154 n n N2 HN22 NT sing 155 n n N3 C2 NT sing 156 n n N3 HN3 NT sing 157 n n C2 C3 NT sing 158 n n C2 H21 NT sing 159 n n C2 H22 NT sing 160 n n C3 O1 NT doub 161 n n C3 N4 NT sing 162 n n N4 C4 NT sing 163 n n N4 HN4 NT sing 164 n n C4 C5 NT sing 165 n y C4 C7 NT doub 166 n y C5 C6 NT doub 167 n y C5 H5 NT sing 168 n n C6 N5 NT sing 169 n y C6 C9 NT sing 170 n n N5 C8 NT sing 171 n n N5 C7 NT sing 172 n y C8 H81 NT sing 173 n n C8 H82 NT sing 174 n n C8 H83 NT sing 175 n n C7 H7 NT sing 176 n n C9 O2 NT doub 177 n n C9 N6 NT sing 178 n n N6 C10 NT sing 179 n n N6 HN6 NT sing 180 n n C10 C11 NT sing 181 n y C10 C13 NT doub 182 n y C11 C12 NT doub 183 n y C11 H11 NT sing 184 n n C12 N7 NT sing 185 n y C12 C15 NT sing 186 n n N7 C14 NT sing 187 n n N7 C13 NT sing 188 n y C14 H141 NT sing 189 n n C14 H142 NT sing 190 n n C14 H143 NT sing 191 n n C13 H13 NT sing 192 n n C15 O3 NT doub 193 n n C15 N8 NT sing 194 n n N8 C16 NT sing 195 n n N8 HN8 NT sing 196 n n C16 C17 NT sing 197 n n C16 H161 NT sing 198 n n C16 H162 NT sing 199 n n C17 C18 NT sing 200 n n C17 H171 NT sing 201 n n C17 H172 NT sing 202 n n C18 N9 NT doub 203 n n C18 N10 NT sing 204 n n N9 HN9 NT sing 205 n n N10 HN01 NT sing 206 n n N10 HN02 NT sing 207 n n # _atom_sites.entry_id 8TC2 _atom_sites.fract_transf_matrix[1][1] 0.014545 _atom_sites.fract_transf_matrix[1][2] 0.008398 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NT _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NT _pdbx_nonpoly_scheme.auth_mon_id NT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . E 5 -10.727 18.597 -1.014 1 159.92 ? C1 NT 101 C 1 HETATM 2 N N1 NT . . . E 5 -11.462 17.641 -1.419 1 156.85 ? N1 NT 101 C 1 HETATM 3 N N2 NT . . . E 5 -11.217 19.379 -0.032 1 160.61 ? N2 NT 101 C 1 HETATM 4 N N3 NT . . . E 5 -9.518 18.772 -1.612 1 133.03 ? N3 NT 101 C 1 HETATM 5 C C2 NT . . . E 5 -9.2 17.897 -2.751 1 128.55 ? C2 NT 101 C 1 HETATM 6 C C3 NT . . . E 5 -7.883 18.005 -3.502 1 132.73 ? C3 NT 101 C 1 HETATM 7 O O1 NT . . . E 5 -7.771 18.853 -4.343 1 160.22 ? O1 NT 101 C 1 HETATM 8 N N4 NT . . . E 5 -6.934 17.113 -3.243 1 129.89 ? N4 NT 101 C 1 HETATM 9 C C4 NT . . . E 5 -5.757 17.058 -3.913 1 125.56 ? C4 NT 101 C 1 HETATM 10 C C5 NT . . . E 5 -4.485 16.728 -3.416 1 126.3 ? C5 NT 101 C 1 HETATM 11 C C6 NT . . . E 5 -3.486 16.934 -4.351 1 109.96 ? C6 NT 101 C 1 HETATM 12 N N5 NT . . . E 5 -4.204 17.396 -5.414 1 129.94 ? N5 NT 101 C 1 HETATM 13 C C8 NT . . . E 5 -3.663 17.801 -6.729 1 148.12 ? C8 NT 101 C 1 HETATM 14 C C7 NT . . . E 5 -5.524 17.492 -5.185 1 114.15 ? C7 NT 101 C 1 HETATM 15 C C9 NT . . . E 5 -1.959 16.691 -4.204 1 112.19 ? C9 NT 101 C 1 HETATM 16 O O2 NT . . . E 5 -1.209 16.829 -5.191 1 95.94 ? O2 NT 101 C 1 HETATM 17 N N6 NT . . . E 5 -1.354 16.319 -3.04 1 110.06 ? N6 NT 101 C 1 HETATM 18 C C10 NT . . . E 5 0.037 16.094 -2.916 1 123.25 ? C10 NT 101 C 1 HETATM 19 C C11 NT . . . E 5 0.818 15.624 -1.805 1 110.4 ? C11 NT 101 C 1 HETATM 20 C C12 NT . . . E 5 2.18 15.563 -2.12 1 137.58 ? C12 NT 101 C 1 HETATM 21 N N7 NT . . . E 5 2.197 15.974 -3.423 1 147.19 ? N7 NT 101 C 1 HETATM 22 C C14 NT . . . E 5 3.402 16.096 -4.304 1 157.5 ? C14 NT 101 C 1 HETATM 23 C C13 NT . . . E 5 0.985 16.276 -3.911 1 110.37 ? C13 NT 101 C 1 HETATM 24 C C15 NT . . . E 5 3.45 15.153 -1.323 1 170.73 ? C15 NT 101 C 1 HETATM 25 O O3 NT . . . E 5 4.52 15.049 -1.974 1 140.1 ? O3 NT 101 C 1 HETATM 26 N N8 NT . . . E 5 3.57 14.898 0.019 1 177.93 ? N8 NT 101 C 1 HETATM 27 C C16 NT . . . E 5 4.9 14.442 0.526 1 180.3 ? C16 NT 101 C 1 HETATM 28 C C17 NT . . . E 5 5.303 14.467 2.017 1 158.62 ? C17 NT 101 C 1 HETATM 29 C C18 NT . . . E 5 6.828 14.374 2.26 1 142 ? C18 NT 101 C 1 HETATM 30 N N9 NT . . . E 5 7.289 14.727 3.385 1 115.94 ? N9 NT 101 C 1 HETATM 31 N N10 NT . . . E 5 7.696 13.935 1.332 1 156.96 ? N10 NT 101 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #