data_8TC6 # _model_server_result.job_id GzEXm0mkTV7IiK2f3Urhow _model_server_result.datetime_utc '2024-11-28 21:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8TC6 # _exptl.entry_id 8TC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TC6 _cell.length_a 67.921 _cell.length_b 67.921 _cell.length_c 65.476 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 3 A DG 3 1_555 D N3 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 A DG 3 1_555 D O2 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 A DG 3 1_555 D N4 DC 7 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog4 A N3 DC 4 A DC 4 1_555 D N2 DG 6 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 5 A DA 5 1_555 D N3 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 5 A DA 5 1_555 D O4 DT 5 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 6 A DG 6 1_555 D N3 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 6 A DG 6 1_555 D O2 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 6 A DG 6 1_555 D N4 DC 4 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 7 A DA 7 1_555 D N3 DT 3 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 7 A DA 7 1_555 D O4 DT 3 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 8 A DC 8 1_555 D N1 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 8 A DC 8 1_555 D O6 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 8 A DC 8 1_555 D N2 DG 2 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 9 A DC 9 1_555 D N1 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 9 A DC 9 1_555 D O6 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 9 A DC 9 1_555 D N2 DG 1 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 10 A DT 10 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 10 A DT 10 1_555 B N6 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 11 A DG 11 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 11 A DG 11 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 11 A DG 11 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 12 A DA 12 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 12 A DA 12 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 13 A DC 13 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 13 A DC 13 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 13 A DC 13 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 A DG 14 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 A DG 14 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 A DG 14 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DA 15 A DA 15 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N6 DA 15 A DA 15 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DT 16 A DT 16 1_555 C N1 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O4 DT 16 A DT 16 1_555 C N6 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 DG 17 A DG 17 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 DG 17 A DG 17 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 DG 17 A DG 17 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 DT 18 A DT 18 1_555 C N1 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O4 DT 18 A DT 18 1_555 C N6 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 DC 19 A DC 19 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N4 DC 19 A DC 19 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O2 DC 19 A DC 19 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N1 DA 20 A DA 20 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N6 DA 20 A DA 20 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N3 DC 21 A DC 21 1_555 C N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N4 DC 21 A DC 21 1_555 C O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O2 DC 21 A DC 21 1_555 C N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 162 n n C1 N2 NT sing 163 n n C1 N3 NT sing 164 n n N1 HN1 NT sing 165 n n N2 HN21 NT sing 166 n n N2 HN22 NT sing 167 n n N3 C2 NT sing 168 n n N3 HN3 NT sing 169 n n C2 C3 NT sing 170 n n C2 H21 NT sing 171 n n C2 H22 NT sing 172 n n C3 O1 NT doub 173 n n C3 N4 NT sing 174 n n N4 C4 NT sing 175 n n N4 HN4 NT sing 176 n n C4 C5 NT sing 177 n y C4 C7 NT doub 178 n y C5 C6 NT doub 179 n y C5 H5 NT sing 180 n n C6 N5 NT sing 181 n y C6 C9 NT sing 182 n n N5 C8 NT sing 183 n n N5 C7 NT sing 184 n y C8 H81 NT sing 185 n n C8 H82 NT sing 186 n n C8 H83 NT sing 187 n n C7 H7 NT sing 188 n n C9 O2 NT doub 189 n n C9 N6 NT sing 190 n n N6 C10 NT sing 191 n n N6 HN6 NT sing 192 n n C10 C11 NT sing 193 n y C10 C13 NT doub 194 n y C11 C12 NT doub 195 n y C11 H11 NT sing 196 n n C12 N7 NT sing 197 n y C12 C15 NT sing 198 n n N7 C14 NT sing 199 n n N7 C13 NT sing 200 n y C14 H141 NT sing 201 n n C14 H142 NT sing 202 n n C14 H143 NT sing 203 n n C13 H13 NT sing 204 n n C15 O3 NT doub 205 n n C15 N8 NT sing 206 n n N8 C16 NT sing 207 n n N8 HN8 NT sing 208 n n C16 C17 NT sing 209 n n C16 H161 NT sing 210 n n C16 H162 NT sing 211 n n C17 C18 NT sing 212 n n C17 H171 NT sing 213 n n C17 H172 NT sing 214 n n C18 N9 NT doub 215 n n C18 N10 NT sing 216 n n N9 HN9 NT sing 217 n n N10 HN01 NT sing 218 n n N10 HN02 NT sing 219 n n # _atom_sites.entry_id 8TC6 _atom_sites.fract_transf_matrix[1][1] 0.014723 _atom_sites.fract_transf_matrix[1][2] 0.0085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NT A 1 101 102 NT NT . F 6 ZQQ A 1 102 2 ZQQ DER . G 7 CAC B 1 101 1 CAC AS . H 6 ZQQ C 1 101 1 ZQQ DER . I 7 CAC D 1 101 2 CAC AS . J 8 HOH A 1 201 1 HOH HOH . J 8 HOH A 2 202 2 HOH HOH . K 8 HOH C 1 201 4 HOH HOH . L 8 HOH D 1 201 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . E 5 -7.699 8.236 8.542 1 93.07 ? C1 NT 101 A 1 HETATM 2 N N1 NT . . . E 5 -7.424 8.726 7.335 1 86.62 ? N1 NT 101 A 1 HETATM 3 N N2 NT . . . E 5 -6.913 7.304 9.079 1 98.93 ? N2 NT 101 A 1 HETATM 4 N N3 NT . . . E 5 -8.76 8.679 9.212 1 91.13 ? N3 NT 101 A 1 HETATM 5 C C2 NT . . . E 5 -8.639 9.363 10.485 1 87.53 ? C2 NT 101 A 1 HETATM 6 C C3 NT . . . E 5 -9.694 8.92 11.472 1 86.31 ? C3 NT 101 A 1 HETATM 7 O O1 NT . . . E 5 -10.167 7.591 11.443 1 81.16 ? O1 NT 101 A 1 HETATM 8 N N4 NT . . . E 5 -10.117 9.85 12.334 1 86.08 ? N4 NT 101 A 1 HETATM 9 C C4 NT . . . E 5 -11.284 9.705 13.106 1 85.92 ? C4 NT 101 A 1 HETATM 10 C C5 NT . . . E 5 -12.231 10.687 13.388 1 86.14 ? C5 NT 101 A 1 HETATM 11 C C6 NT . . . E 5 -13.222 10.123 14.194 1 79.91 ? C6 NT 101 A 1 HETATM 12 N N5 NT . . . E 5 -12.885 8.816 14.394 1 83.9 ? N5 NT 101 A 1 HETATM 13 C C8 NT . . . E 5 -13.634 7.786 15.19 1 87.37 ? C8 NT 101 A 1 HETATM 14 C C7 NT . . . E 5 -11.708 8.55 13.744 1 85.5 ? C7 NT 101 A 1 HETATM 15 C C9 NT . . . E 5 -14.313 10.896 14.905 1 76.66 ? C9 NT 101 A 1 HETATM 16 O O2 NT . . . E 5 -14.954 10.319 16.023 1 75.96 ? O2 NT 101 A 1 HETATM 17 N N6 NT . . . E 5 -14.657 12.117 14.473 1 79.77 ? N6 NT 101 A 1 HETATM 18 C C10 NT . . . E 5 -15.44 12.994 15.253 1 79.39 ? C10 NT 101 A 1 HETATM 19 C C11 NT . . . E 5 -16.227 14.047 14.797 1 77.62 ? C11 NT 101 A 1 HETATM 20 C C12 NT . . . E 5 -16.837 14.668 15.884 1 77.04 ? C12 NT 101 A 1 HETATM 21 N N7 NT . . . E 5 -16.429 14 16.999 1 83.22 ? N7 NT 101 A 1 HETATM 22 C C14 NT . . . E 5 -16.801 14.279 18.428 1 85.77 ? C14 NT 101 A 1 HETATM 23 C C13 NT . . . E 5 -15.578 12.99 16.632 1 79.59 ? C13 NT 101 A 1 HETATM 24 C C15 NT . . . E 5 -17.489 16.03 15.835 1 77.44 ? C15 NT 101 A 1 HETATM 25 O O3 NT . . . E 5 -18.001 16.595 17.024 1 81.6 ? O3 NT 101 A 1 HETATM 26 N N8 NT . . . E 5 -17.543 16.677 14.664 1 76.95 ? N8 NT 101 A 1 HETATM 27 C C16 NT . . . E 5 -18.563 17.644 14.265 1 71.3 ? C16 NT 101 A 1 HETATM 28 C C17 NT . . . E 5 -18.821 18.785 15.249 1 64.56 ? C17 NT 101 A 1 HETATM 29 C C18 NT . . . E 5 -19.497 19.967 14.592 1 67.86 ? C18 NT 101 A 1 HETATM 30 N N9 NT . . . E 5 -19.591 21.104 15.274 1 69.79 ? N9 NT 101 A 1 HETATM 31 N N10 NT . . . E 5 -19.971 19.85 13.355 1 75.32 ? N10 NT 101 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #