data_8TCE # _model_server_result.job_id NN37L5A3UfB8xLcZaxEa2g _model_server_result.datetime_utc '2024-10-10 13:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8TCE # _exptl.entry_id 8TCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.28 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-phenyl-2-[(3R)-pyrrolidin-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.7 _cell.angle_gamma 90 _cell.entry_id 8TCE _cell.length_a 37.602 _cell.length_b 57.574 _cell.length_c 38.305 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 1 1_555 A SG CYS 89 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 33 A CYS 22 1_555 A SG CYS 72 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 61 A CYS 50 1_555 A SG CYS 84 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf4 B SG CYS 12 B CYS 1 1_555 B SG CYS 89 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 B SG CYS 33 B CYS 22 1_555 B SG CYS 72 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf6 B SG CYS 61 B CYS 50 1_555 B SG CYS 84 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C13 H17 N O2' _chem_comp.formula_weight 219.28 _chem_comp.id HWF _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-phenyl-2-[(3R)-pyrrolidin-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LY3353871 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 HWF doub 152 n y C10 C9 HWF sing 153 n y C11 C12 HWF sing 154 n y C9 C8 HWF doub 155 n y C12 C7 HWF doub 156 n y C8 C7 HWF sing 157 n y C7 C6 HWF sing 158 n n C6 C1 HWF sing 159 n n C1 C2 HWF sing 160 n n C1 C HWF sing 161 n n C5 C2 HWF sing 162 n n C5 N HWF sing 163 n n O1 C HWF doub 164 n n C2 C3 HWF sing 165 n n C O HWF sing 166 n n N C4 HWF sing 167 n n C3 C4 HWF sing 168 n n C6 H1 HWF sing 169 n n C6 H2 HWF sing 170 n n C1 H3 HWF sing 171 n n C5 H4 HWF sing 172 n n C5 H5 HWF sing 173 n n C4 H6 HWF sing 174 n n C4 H7 HWF sing 175 n n C3 H8 HWF sing 176 n n C3 H9 HWF sing 177 n n C2 H10 HWF sing 178 n n O H11 HWF sing 179 n n N H12 HWF sing 180 n n C12 H14 HWF sing 181 n n C11 H15 HWF sing 182 n n C10 H16 HWF sing 183 n n C9 H17 HWF sing 184 n n C8 H18 HWF sing 185 n n # _atom_sites.entry_id 8TCE _atom_sites.fract_transf_matrix[1][1] 0.026594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HWF A 1 101 2 HWF SX1 . D 2 HWF B 1 101 1 HWF SX1 . E 3 HOH A 1 201 71 HOH HOH . E 3 HOH A 2 202 117 HOH HOH . E 3 HOH A 3 203 126 HOH HOH . E 3 HOH A 4 204 127 HOH HOH . E 3 HOH A 5 205 103 HOH HOH . E 3 HOH A 6 206 191 HOH HOH . E 3 HOH A 7 207 72 HOH HOH . E 3 HOH A 8 208 59 HOH HOH . E 3 HOH A 9 209 144 HOH HOH . E 3 HOH A 10 210 11 HOH HOH . E 3 HOH A 11 211 153 HOH HOH . E 3 HOH A 12 212 119 HOH HOH . E 3 HOH A 13 213 38 HOH HOH . E 3 HOH A 14 214 69 HOH HOH . E 3 HOH A 15 215 88 HOH HOH . E 3 HOH A 16 216 20 HOH HOH . E 3 HOH A 17 217 62 HOH HOH . E 3 HOH A 18 218 56 HOH HOH . E 3 HOH A 19 219 68 HOH HOH . E 3 HOH A 20 220 39 HOH HOH . E 3 HOH A 21 221 34 HOH HOH . E 3 HOH A 22 222 141 HOH HOH . E 3 HOH A 23 223 129 HOH HOH . E 3 HOH A 24 224 21 HOH HOH . E 3 HOH A 25 225 23 HOH HOH . E 3 HOH A 26 226 27 HOH HOH . E 3 HOH A 27 227 31 HOH HOH . E 3 HOH A 28 228 61 HOH HOH . E 3 HOH A 29 229 65 HOH HOH . E 3 HOH A 30 230 30 HOH HOH . E 3 HOH A 31 231 123 HOH HOH . E 3 HOH A 32 232 16 HOH HOH . E 3 HOH A 33 233 108 HOH HOH . E 3 HOH A 34 234 19 HOH HOH . E 3 HOH A 35 235 18 HOH HOH . E 3 HOH A 36 236 145 HOH HOH . E 3 HOH A 37 237 186 HOH HOH . E 3 HOH A 38 238 2 HOH HOH . E 3 HOH A 39 239 75 HOH HOH . E 3 HOH A 40 240 168 HOH HOH . E 3 HOH A 41 241 63 HOH HOH . E 3 HOH A 42 242 3 HOH HOH . E 3 HOH A 43 243 140 HOH HOH . E 3 HOH A 44 244 113 HOH HOH . E 3 HOH A 45 245 33 HOH HOH . E 3 HOH A 46 246 28 HOH HOH . E 3 HOH A 47 247 192 HOH HOH . E 3 HOH A 48 248 43 HOH HOH . E 3 HOH A 49 249 47 HOH HOH . E 3 HOH A 50 250 131 HOH HOH . E 3 HOH A 51 251 57 HOH HOH . E 3 HOH A 52 252 17 HOH HOH . E 3 HOH A 53 253 9 HOH HOH . E 3 HOH A 54 254 120 HOH HOH . E 3 HOH A 55 255 174 HOH HOH . E 3 HOH A 56 256 15 HOH HOH . E 3 HOH A 57 257 54 HOH HOH . E 3 HOH A 58 258 4 HOH HOH . E 3 HOH A 59 259 85 HOH HOH . E 3 HOH A 60 260 37 HOH HOH . E 3 HOH A 61 261 135 HOH HOH . E 3 HOH A 62 262 118 HOH HOH . E 3 HOH A 63 263 64 HOH HOH . E 3 HOH A 64 264 146 HOH HOH . E 3 HOH A 65 265 124 HOH HOH . E 3 HOH A 66 266 133 HOH HOH . E 3 HOH A 67 267 81 HOH HOH . E 3 HOH A 68 268 5 HOH HOH . E 3 HOH A 69 269 125 HOH HOH . E 3 HOH A 70 270 79 HOH HOH . E 3 HOH A 71 271 78 HOH HOH . E 3 HOH A 72 272 13 HOH HOH . E 3 HOH A 73 273 7 HOH HOH . E 3 HOH A 74 274 132 HOH HOH . E 3 HOH A 75 275 114 HOH HOH . E 3 HOH A 76 276 111 HOH HOH . E 3 HOH A 77 277 138 HOH HOH . E 3 HOH A 78 278 130 HOH HOH . E 3 HOH A 79 279 89 HOH HOH . E 3 HOH A 80 280 183 HOH HOH . E 3 HOH A 81 281 90 HOH HOH . E 3 HOH A 82 282 107 HOH HOH . E 3 HOH A 83 283 100 HOH HOH . E 3 HOH A 84 284 181 HOH HOH . E 3 HOH A 85 285 154 HOH HOH . E 3 HOH A 86 286 105 HOH HOH . E 3 HOH A 87 287 109 HOH HOH . E 3 HOH A 88 288 36 HOH HOH . E 3 HOH A 89 289 102 HOH HOH . E 3 HOH A 90 290 86 HOH HOH . E 3 HOH A 91 291 178 HOH HOH . E 3 HOH A 92 292 155 HOH HOH . E 3 HOH A 93 293 167 HOH HOH . E 3 HOH A 94 294 156 HOH HOH . E 3 HOH A 95 295 198 HOH HOH . E 3 HOH A 96 296 121 HOH HOH . E 3 HOH A 97 297 148 HOH HOH . F 3 HOH B 1 201 82 HOH HOH . F 3 HOH B 2 202 55 HOH HOH . F 3 HOH B 3 203 177 HOH HOH . F 3 HOH B 4 204 41 HOH HOH . F 3 HOH B 5 205 171 HOH HOH . F 3 HOH B 6 206 139 HOH HOH . F 3 HOH B 7 207 6 HOH HOH . F 3 HOH B 8 208 45 HOH HOH . F 3 HOH B 9 209 26 HOH HOH . F 3 HOH B 10 210 158 HOH HOH . F 3 HOH B 11 211 147 HOH HOH . F 3 HOH B 12 212 93 HOH HOH . F 3 HOH B 13 213 87 HOH HOH . F 3 HOH B 14 214 52 HOH HOH . F 3 HOH B 15 215 25 HOH HOH . F 3 HOH B 16 216 77 HOH HOH . F 3 HOH B 17 217 95 HOH HOH . F 3 HOH B 18 218 94 HOH HOH . F 3 HOH B 19 219 58 HOH HOH . F 3 HOH B 20 220 70 HOH HOH . F 3 HOH B 21 221 12 HOH HOH . F 3 HOH B 22 222 196 HOH HOH . F 3 HOH B 23 223 66 HOH HOH . F 3 HOH B 24 224 187 HOH HOH . F 3 HOH B 25 225 115 HOH HOH . F 3 HOH B 26 226 53 HOH HOH . F 3 HOH B 27 227 182 HOH HOH . F 3 HOH B 28 228 162 HOH HOH . F 3 HOH B 29 229 51 HOH HOH . F 3 HOH B 30 230 91 HOH HOH . F 3 HOH B 31 231 29 HOH HOH . F 3 HOH B 32 232 42 HOH HOH . F 3 HOH B 33 233 14 HOH HOH . F 3 HOH B 34 234 22 HOH HOH . F 3 HOH B 35 235 194 HOH HOH . F 3 HOH B 36 236 40 HOH HOH . F 3 HOH B 37 237 46 HOH HOH . F 3 HOH B 38 238 176 HOH HOH . F 3 HOH B 39 239 67 HOH HOH . F 3 HOH B 40 240 143 HOH HOH . F 3 HOH B 41 241 97 HOH HOH . F 3 HOH B 42 242 48 HOH HOH . F 3 HOH B 43 243 10 HOH HOH . F 3 HOH B 44 244 180 HOH HOH . F 3 HOH B 45 245 151 HOH HOH . F 3 HOH B 46 246 159 HOH HOH . F 3 HOH B 47 247 195 HOH HOH . F 3 HOH B 48 248 164 HOH HOH . F 3 HOH B 49 249 104 HOH HOH . F 3 HOH B 50 250 116 HOH HOH . F 3 HOH B 51 251 32 HOH HOH . F 3 HOH B 52 252 175 HOH HOH . F 3 HOH B 53 253 106 HOH HOH . F 3 HOH B 54 254 142 HOH HOH . F 3 HOH B 55 255 166 HOH HOH . F 3 HOH B 56 256 60 HOH HOH . F 3 HOH B 57 257 150 HOH HOH . F 3 HOH B 58 258 8 HOH HOH . F 3 HOH B 59 259 188 HOH HOH . F 3 HOH B 60 260 24 HOH HOH . F 3 HOH B 61 261 165 HOH HOH . F 3 HOH B 62 262 160 HOH HOH . F 3 HOH B 63 263 92 HOH HOH . F 3 HOH B 64 264 98 HOH HOH . F 3 HOH B 65 265 172 HOH HOH . F 3 HOH B 66 266 35 HOH HOH . F 3 HOH B 67 267 163 HOH HOH . F 3 HOH B 68 268 96 HOH HOH . F 3 HOH B 69 269 83 HOH HOH . F 3 HOH B 70 270 101 HOH HOH . F 3 HOH B 71 271 110 HOH HOH . F 3 HOH B 72 272 193 HOH HOH . F 3 HOH B 73 273 112 HOH HOH . F 3 HOH B 74 274 190 HOH HOH . F 3 HOH B 75 275 152 HOH HOH . F 3 HOH B 76 276 136 HOH HOH . F 3 HOH B 77 277 122 HOH HOH . F 3 HOH B 78 278 1 HOH HOH . F 3 HOH B 79 279 44 HOH HOH . F 3 HOH B 80 280 128 HOH HOH . F 3 HOH B 81 281 84 HOH HOH . F 3 HOH B 82 282 185 HOH HOH . F 3 HOH B 83 283 179 HOH HOH . F 3 HOH B 84 284 137 HOH HOH . F 3 HOH B 85 285 74 HOH HOH . F 3 HOH B 86 286 99 HOH HOH . F 3 HOH B 87 287 184 HOH HOH . F 3 HOH B 88 288 80 HOH HOH . F 3 HOH B 89 289 134 HOH HOH . F 3 HOH B 90 290 170 HOH HOH . F 3 HOH B 91 291 73 HOH HOH . F 3 HOH B 92 292 197 HOH HOH . F 3 HOH B 93 293 189 HOH HOH . F 3 HOH B 94 294 49 HOH HOH . F 3 HOH B 95 295 50 HOH HOH . F 3 HOH B 96 296 161 HOH HOH . F 3 HOH B 97 297 157 HOH HOH . F 3 HOH B 98 298 149 HOH HOH . F 3 HOH B 99 299 76 HOH HOH . F 3 HOH B 100 300 173 HOH HOH . F 3 HOH B 101 301 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HWF . . . C 2 8.931 -0.262 -3.881 1 10.06 ? O1 HWF 101 A 1 HETATM 2 C C7 HWF . . . C 2 5.474 0.54 -3.854 1 16.35 ? C7 HWF 101 A 1 HETATM 3 C C6 HWF . . . C 2 5.949 0.611 -2.424 1 13.86 ? C6 HWF 101 A 1 HETATM 4 C C1 HWF . . . C 2 7.475 0.558 -2.221 1 13.05 ? C1 HWF 101 A 1 HETATM 5 C C5 HWF . . . C 2 7.401 1.724 0.078 1 12.93 ? C5 HWF 101 A 1 HETATM 6 C C4 HWF . . . C 2 9.317 0.699 1.134 1 12.91 ? C4 HWF 101 A 1 HETATM 7 C C3 HWF . . . C 2 9.265 0.219 -0.328 1 13.02 ? C3 HWF 101 A 1 HETATM 8 C C2 HWF . . . C 2 7.8 0.468 -0.71 1 11.57 ? C2 HWF 101 A 1 HETATM 9 C C HWF . . . C 2 8.083 -0.605 -2.967 1 13.24 ? C HWF 101 A 1 HETATM 10 O O HWF . . . C 2 7.794 -1.749 -2.72 1 14.31 ? O HWF 101 A 1 HETATM 11 N N HWF . . . C 2 8.476 1.919 1.122 1 11.74 ? N HWF 101 A 1 HETATM 12 C C12 HWF . . . C 2 5.565 1.646 -4.692 1 20.87 ? C12 HWF 101 A 1 HETATM 13 C C11 HWF . . . C 2 5.129 1.579 -6.007 1 21.69 ? C11 HWF 101 A 1 HETATM 14 C C10 HWF . . . C 2 4.593 0.406 -6.502 1 27.61 ? C10 HWF 101 A 1 HETATM 15 C C9 HWF . . . C 2 4.497 -0.702 -5.679 1 33.64 ? C9 HWF 101 A 1 HETATM 16 C C8 HWF . . . C 2 4.932 -0.633 -4.363 1 23.91 ? C8 HWF 101 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 16 #