data_8TCL # _model_server_result.job_id cvuKN566iXzqf6pXnGY7zw _model_server_result.datetime_utc '2024-11-23 17:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tcl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8TCL # _exptl.entry_id 8TCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.104 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PICRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TCL _cell.length_a 77.579 _cell.length_b 99.624 _cell.length_c 104.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H3 N3 O7' _chem_comp.formula_weight 229.104 _chem_comp.id TNF _chem_comp.mon_nstd_flag . _chem_comp.name 'PICRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4,6-TRINITROPHENOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TNF doub 306 n y C1 O1 TNF sing 307 n n C1 C6 TNF sing 308 n y C2 C3 TNF sing 309 n y C2 N2 TNF sing 310 n n C3 C4 TNF doub 311 n y C3 H3 TNF sing 312 n n C4 N4 TNF sing 313 n n C4 C5 TNF sing 314 n y N4 O41 TNF sing 315 n n N4 O42 TNF doub 316 n n N2 O21 TNF sing 317 n n N2 O22 TNF doub 318 n n O1 H1 TNF sing 319 n n C6 C5 TNF doub 320 n y C6 N6 TNF sing 321 n n C5 H5 TNF sing 322 n n N6 O61 TNF sing 323 n n N6 O62 TNF doub 324 n n # _atom_sites.entry_id 8TCL _atom_sites.fract_transf_matrix[1][1] 0.01289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TNF B 1 501 1 TNF TNF . C 2 TNF B 1 502 2 TNF TNF . D 2 TNF B 1 503 3 TNF TNF . E 3 HOH B 1 601 78 HOH HOH . E 3 HOH B 2 602 23 HOH HOH . E 3 HOH B 3 603 36 HOH HOH . E 3 HOH B 4 604 66 HOH HOH . E 3 HOH B 5 605 100 HOH HOH . E 3 HOH B 6 606 58 HOH HOH . E 3 HOH B 7 607 89 HOH HOH . E 3 HOH B 8 608 90 HOH HOH . E 3 HOH B 9 609 65 HOH HOH . E 3 HOH B 10 610 40 HOH HOH . E 3 HOH B 11 611 1 HOH HOH . E 3 HOH B 12 612 176 HOH HOH . E 3 HOH B 13 613 27 HOH HOH . E 3 HOH B 14 614 31 HOH HOH . E 3 HOH B 15 615 154 HOH HOH . E 3 HOH B 16 616 8 HOH HOH . E 3 HOH B 17 617 64 HOH HOH . E 3 HOH B 18 618 62 HOH HOH . E 3 HOH B 19 619 9 HOH HOH . E 3 HOH B 20 620 142 HOH HOH . E 3 HOH B 21 621 136 HOH HOH . E 3 HOH B 22 622 80 HOH HOH . E 3 HOH B 23 623 88 HOH HOH . E 3 HOH B 24 624 2 HOH HOH . E 3 HOH B 25 625 26 HOH HOH . E 3 HOH B 26 626 97 HOH HOH . E 3 HOH B 27 627 11 HOH HOH . E 3 HOH B 28 628 84 HOH HOH . E 3 HOH B 29 629 28 HOH HOH . E 3 HOH B 30 630 110 HOH HOH . E 3 HOH B 31 631 12 HOH HOH . E 3 HOH B 32 632 112 HOH HOH . E 3 HOH B 33 633 15 HOH HOH . E 3 HOH B 34 634 74 HOH HOH . E 3 HOH B 35 635 6 HOH HOH . E 3 HOH B 36 636 118 HOH HOH . E 3 HOH B 37 637 5 HOH HOH . E 3 HOH B 38 638 7 HOH HOH . E 3 HOH B 39 639 172 HOH HOH . E 3 HOH B 40 640 3 HOH HOH . E 3 HOH B 41 641 16 HOH HOH . E 3 HOH B 42 642 160 HOH HOH . E 3 HOH B 43 643 32 HOH HOH . E 3 HOH B 44 644 102 HOH HOH . E 3 HOH B 45 645 14 HOH HOH . E 3 HOH B 46 646 29 HOH HOH . E 3 HOH B 47 647 10 HOH HOH . E 3 HOH B 48 648 22 HOH HOH . E 3 HOH B 49 649 46 HOH HOH . E 3 HOH B 50 650 24 HOH HOH . E 3 HOH B 51 651 75 HOH HOH . E 3 HOH B 52 652 116 HOH HOH . E 3 HOH B 53 653 159 HOH HOH . E 3 HOH B 54 654 73 HOH HOH . E 3 HOH B 55 655 79 HOH HOH . E 3 HOH B 56 656 57 HOH HOH . E 3 HOH B 57 657 4 HOH HOH . E 3 HOH B 58 658 63 HOH HOH . E 3 HOH B 59 659 122 HOH HOH . E 3 HOH B 60 660 83 HOH HOH . E 3 HOH B 61 661 33 HOH HOH . E 3 HOH B 62 662 148 HOH HOH . E 3 HOH B 63 663 99 HOH HOH . E 3 HOH B 64 664 77 HOH HOH . E 3 HOH B 65 665 19 HOH HOH . E 3 HOH B 66 666 43 HOH HOH . E 3 HOH B 67 667 21 HOH HOH . E 3 HOH B 68 668 18 HOH HOH . E 3 HOH B 69 669 47 HOH HOH . E 3 HOH B 70 670 141 HOH HOH . E 3 HOH B 71 671 44 HOH HOH . E 3 HOH B 72 672 96 HOH HOH . E 3 HOH B 73 673 81 HOH HOH . E 3 HOH B 74 674 140 HOH HOH . E 3 HOH B 75 675 126 HOH HOH . E 3 HOH B 76 676 71 HOH HOH . E 3 HOH B 77 677 20 HOH HOH . E 3 HOH B 78 678 169 HOH HOH . E 3 HOH B 79 679 52 HOH HOH . E 3 HOH B 80 680 55 HOH HOH . E 3 HOH B 81 681 35 HOH HOH . E 3 HOH B 82 682 76 HOH HOH . E 3 HOH B 83 683 174 HOH HOH . E 3 HOH B 84 684 106 HOH HOH . E 3 HOH B 85 685 91 HOH HOH . E 3 HOH B 86 686 156 HOH HOH . E 3 HOH B 87 687 108 HOH HOH . E 3 HOH B 88 688 37 HOH HOH . E 3 HOH B 89 689 45 HOH HOH . E 3 HOH B 90 690 153 HOH HOH . E 3 HOH B 91 691 50 HOH HOH . E 3 HOH B 92 692 38 HOH HOH . E 3 HOH B 93 693 54 HOH HOH . E 3 HOH B 94 694 49 HOH HOH . E 3 HOH B 95 695 111 HOH HOH . E 3 HOH B 96 696 103 HOH HOH . E 3 HOH B 97 697 53 HOH HOH . E 3 HOH B 98 698 30 HOH HOH . E 3 HOH B 99 699 144 HOH HOH . E 3 HOH B 100 700 151 HOH HOH . E 3 HOH B 101 701 163 HOH HOH . E 3 HOH B 102 702 94 HOH HOH . E 3 HOH B 103 703 41 HOH HOH . E 3 HOH B 104 704 70 HOH HOH . E 3 HOH B 105 705 34 HOH HOH . E 3 HOH B 106 706 86 HOH HOH . E 3 HOH B 107 707 104 HOH HOH . E 3 HOH B 108 708 42 HOH HOH . E 3 HOH B 109 709 170 HOH HOH . E 3 HOH B 110 710 17 HOH HOH . E 3 HOH B 111 711 139 HOH HOH . E 3 HOH B 112 712 85 HOH HOH . E 3 HOH B 113 713 98 HOH HOH . E 3 HOH B 114 714 173 HOH HOH . E 3 HOH B 115 715 68 HOH HOH . E 3 HOH B 116 716 51 HOH HOH . E 3 HOH B 117 717 95 HOH HOH . E 3 HOH B 118 718 117 HOH HOH . E 3 HOH B 119 719 146 HOH HOH . E 3 HOH B 120 720 177 HOH HOH . E 3 HOH B 121 721 59 HOH HOH . E 3 HOH B 122 722 149 HOH HOH . E 3 HOH B 123 723 175 HOH HOH . E 3 HOH B 124 724 168 HOH HOH . E 3 HOH B 125 725 101 HOH HOH . E 3 HOH B 126 726 72 HOH HOH . E 3 HOH B 127 727 114 HOH HOH . E 3 HOH B 128 728 113 HOH HOH . E 3 HOH B 129 729 25 HOH HOH . E 3 HOH B 130 730 67 HOH HOH . E 3 HOH B 131 731 87 HOH HOH . E 3 HOH B 132 732 124 HOH HOH . E 3 HOH B 133 733 147 HOH HOH . E 3 HOH B 134 734 161 HOH HOH . E 3 HOH B 135 735 128 HOH HOH . E 3 HOH B 136 736 60 HOH HOH . E 3 HOH B 137 737 127 HOH HOH . E 3 HOH B 138 738 39 HOH HOH . E 3 HOH B 139 739 171 HOH HOH . E 3 HOH B 140 740 93 HOH HOH . E 3 HOH B 141 741 150 HOH HOH . E 3 HOH B 142 742 48 HOH HOH . E 3 HOH B 143 743 135 HOH HOH . E 3 HOH B 144 744 109 HOH HOH . E 3 HOH B 145 745 137 HOH HOH . E 3 HOH B 146 746 107 HOH HOH . E 3 HOH B 147 747 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNF . . . B 2 -3.404 0.188 -28.859 1 27.77 ? C1 TNF 501 B 1 HETATM 2 C C2 TNF . . . B 2 -3.627 -0.969 -29.617 1 28.32 ? C2 TNF 501 B 1 HETATM 3 C C3 TNF . . . B 2 -3.731 -2.166 -28.995 1 26.36 ? C3 TNF 501 B 1 HETATM 4 C C4 TNF . . . B 2 -3.596 -2.185 -27.631 1 26.21 ? C4 TNF 501 B 1 HETATM 5 N N4 TNF . . . B 2 -3.656 -3.448 -27.029 1 23.87 ? N4 TNF 501 B 1 HETATM 6 N N2 TNF . . . B 2 -3.792 -0.968 -31.061 1 30.72 ? N2 TNF 501 B 1 HETATM 7 O O1 TNF . . . B 2 -3.3 1.422 -29.478 1 30.16 ? O1 TNF 501 B 1 HETATM 8 O O21 TNF . . . B 2 -3.831 -2.138 -31.769 1 29.75 ? O21 TNF 501 B 1 HETATM 9 O O22 TNF . . . B 2 -3.965 0.091 -31.583 1 38.12 ? O22 TNF 501 B 1 HETATM 10 O O41 TNF . . . B 2 -3.97 -4.469 -27.875 1 30.01 ? O41 TNF 501 B 1 HETATM 11 C C6 TNF . . . B 2 -3.279 0.124 -27.469 1 26.79 ? C6 TNF 501 B 1 HETATM 12 C C5 TNF . . . B 2 -3.381 -1.079 -26.862 1 26.07 ? C5 TNF 501 B 1 HETATM 13 O O42 TNF . . . B 2 -3.377 -3.604 -25.899 1 26.02 ? O42 TNF 501 B 1 HETATM 14 N N6 TNF . . . B 2 -3.122 1.3 -26.625 1 29.12 ? N6 TNF 501 B 1 HETATM 15 O O61 TNF . . . B 2 -3.022 1.169 -25.248 1 28.9 ? O61 TNF 501 B 1 HETATM 16 O O62 TNF . . . B 2 -3.222 2.393 -27.051 1 31.27 ? O62 TNF 501 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #