data_8TCM # _model_server_result.job_id DE5eyRauUXveeQUHTn9DWw _model_server_result.datetime_utc '2024-10-14 03:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8TCM # _exptl.entry_id 8TCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.104 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PICRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TCM _cell.length_a 77.309 _cell.length_b 99.406 _cell.length_c 104.747 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H3 N3 O7' _chem_comp.formula_weight 229.104 _chem_comp.id TNF _chem_comp.mon_nstd_flag . _chem_comp.name 'PICRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4,6-TRINITROPHENOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TNF doub 306 n y C1 O1 TNF sing 307 n n C1 C6 TNF sing 308 n y C2 C3 TNF sing 309 n y C2 N2 TNF sing 310 n n C3 C4 TNF doub 311 n y C3 H3 TNF sing 312 n n C4 N4 TNF sing 313 n n C4 C5 TNF sing 314 n y N4 O41 TNF sing 315 n n N4 O42 TNF doub 316 n n N2 O21 TNF sing 317 n n N2 O22 TNF doub 318 n n O1 H1 TNF sing 319 n n C6 C5 TNF doub 320 n y C6 N6 TNF sing 321 n n C5 H5 TNF sing 322 n n N6 O61 TNF sing 323 n n N6 O62 TNF doub 324 n n # _atom_sites.entry_id 8TCM _atom_sites.fract_transf_matrix[1][1] 0.012935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TNF B 1 501 1 TNF TNF . C 2 TNF B 1 502 2 TNF TNF . D 2 TNF B 1 503 3 TNF TNF . E 3 ZQT B 1 504 1 ZQT XE1 . F 3 ZQT B 1 505 2 ZQT XE1 . G 4 HOH B 1 601 238 HOH HOH . G 4 HOH B 2 602 231 HOH HOH . G 4 HOH B 3 603 144 HOH HOH . G 4 HOH B 4 604 80 HOH HOH . G 4 HOH B 5 605 237 HOH HOH . G 4 HOH B 6 606 95 HOH HOH . G 4 HOH B 7 607 114 HOH HOH . G 4 HOH B 8 608 58 HOH HOH . G 4 HOH B 9 609 75 HOH HOH . G 4 HOH B 10 610 85 HOH HOH . G 4 HOH B 11 611 139 HOH HOH . G 4 HOH B 12 612 92 HOH HOH . G 4 HOH B 13 613 54 HOH HOH . G 4 HOH B 14 614 77 HOH HOH . G 4 HOH B 15 615 81 HOH HOH . G 4 HOH B 16 616 16 HOH HOH . G 4 HOH B 17 617 60 HOH HOH . G 4 HOH B 18 618 59 HOH HOH . G 4 HOH B 19 619 153 HOH HOH . G 4 HOH B 20 620 97 HOH HOH . G 4 HOH B 21 621 50 HOH HOH . G 4 HOH B 22 622 83 HOH HOH . G 4 HOH B 23 623 78 HOH HOH . G 4 HOH B 24 624 226 HOH HOH . G 4 HOH B 25 625 128 HOH HOH . G 4 HOH B 26 626 111 HOH HOH . G 4 HOH B 27 627 230 HOH HOH . G 4 HOH B 28 628 8 HOH HOH . G 4 HOH B 29 629 135 HOH HOH . G 4 HOH B 30 630 10 HOH HOH . G 4 HOH B 31 631 94 HOH HOH . G 4 HOH B 32 632 25 HOH HOH . G 4 HOH B 33 633 13 HOH HOH . G 4 HOH B 34 634 87 HOH HOH . G 4 HOH B 35 635 38 HOH HOH . G 4 HOH B 36 636 1 HOH HOH . G 4 HOH B 37 637 145 HOH HOH . G 4 HOH B 38 638 51 HOH HOH . G 4 HOH B 39 639 9 HOH HOH . G 4 HOH B 40 640 64 HOH HOH . G 4 HOH B 41 641 96 HOH HOH . G 4 HOH B 42 642 194 HOH HOH . G 4 HOH B 43 643 39 HOH HOH . G 4 HOH B 44 644 19 HOH HOH . G 4 HOH B 45 645 52 HOH HOH . G 4 HOH B 46 646 15 HOH HOH . G 4 HOH B 47 647 12 HOH HOH . G 4 HOH B 48 648 125 HOH HOH . G 4 HOH B 49 649 220 HOH HOH . G 4 HOH B 50 650 35 HOH HOH . G 4 HOH B 51 651 45 HOH HOH . G 4 HOH B 52 652 2 HOH HOH . G 4 HOH B 53 653 5 HOH HOH . G 4 HOH B 54 654 176 HOH HOH . G 4 HOH B 55 655 22 HOH HOH . G 4 HOH B 56 656 4 HOH HOH . G 4 HOH B 57 657 42 HOH HOH . G 4 HOH B 58 658 100 HOH HOH . G 4 HOH B 59 659 27 HOH HOH . G 4 HOH B 60 660 49 HOH HOH . G 4 HOH B 61 661 73 HOH HOH . G 4 HOH B 62 662 65 HOH HOH . G 4 HOH B 63 663 124 HOH HOH . G 4 HOH B 64 664 84 HOH HOH . G 4 HOH B 65 665 24 HOH HOH . G 4 HOH B 66 666 56 HOH HOH . G 4 HOH B 67 667 11 HOH HOH . G 4 HOH B 68 668 67 HOH HOH . G 4 HOH B 69 669 3 HOH HOH . G 4 HOH B 70 670 6 HOH HOH . G 4 HOH B 71 671 18 HOH HOH . G 4 HOH B 72 672 98 HOH HOH . G 4 HOH B 73 673 157 HOH HOH . G 4 HOH B 74 674 23 HOH HOH . G 4 HOH B 75 675 31 HOH HOH . G 4 HOH B 76 676 40 HOH HOH . G 4 HOH B 77 677 17 HOH HOH . G 4 HOH B 78 678 14 HOH HOH . G 4 HOH B 79 679 7 HOH HOH . G 4 HOH B 80 680 161 HOH HOH . G 4 HOH B 81 681 89 HOH HOH . G 4 HOH B 82 682 188 HOH HOH . G 4 HOH B 83 683 44 HOH HOH . G 4 HOH B 84 684 154 HOH HOH . G 4 HOH B 85 685 233 HOH HOH . G 4 HOH B 86 686 155 HOH HOH . G 4 HOH B 87 687 103 HOH HOH . G 4 HOH B 88 688 71 HOH HOH . G 4 HOH B 89 689 168 HOH HOH . G 4 HOH B 90 690 21 HOH HOH . G 4 HOH B 91 691 134 HOH HOH . G 4 HOH B 92 692 224 HOH HOH . G 4 HOH B 93 693 192 HOH HOH . G 4 HOH B 94 694 46 HOH HOH . G 4 HOH B 95 695 202 HOH HOH . G 4 HOH B 96 696 20 HOH HOH . G 4 HOH B 97 697 66 HOH HOH . G 4 HOH B 98 698 142 HOH HOH . G 4 HOH B 99 699 74 HOH HOH . G 4 HOH B 100 700 113 HOH HOH . G 4 HOH B 101 701 32 HOH HOH . G 4 HOH B 102 702 43 HOH HOH . G 4 HOH B 103 703 216 HOH HOH . G 4 HOH B 104 704 62 HOH HOH . G 4 HOH B 105 705 93 HOH HOH . G 4 HOH B 106 706 29 HOH HOH . G 4 HOH B 107 707 76 HOH HOH . G 4 HOH B 108 708 47 HOH HOH . G 4 HOH B 109 709 53 HOH HOH . G 4 HOH B 110 710 109 HOH HOH . G 4 HOH B 111 711 197 HOH HOH . G 4 HOH B 112 712 234 HOH HOH . G 4 HOH B 113 713 159 HOH HOH . G 4 HOH B 114 714 126 HOH HOH . G 4 HOH B 115 715 48 HOH HOH . G 4 HOH B 116 716 169 HOH HOH . G 4 HOH B 117 717 175 HOH HOH . G 4 HOH B 118 718 99 HOH HOH . G 4 HOH B 119 719 143 HOH HOH . G 4 HOH B 120 720 26 HOH HOH . G 4 HOH B 121 721 69 HOH HOH . G 4 HOH B 122 722 37 HOH HOH . G 4 HOH B 123 723 170 HOH HOH . G 4 HOH B 124 724 183 HOH HOH . G 4 HOH B 125 725 68 HOH HOH . G 4 HOH B 126 726 152 HOH HOH . G 4 HOH B 127 727 121 HOH HOH . G 4 HOH B 128 728 70 HOH HOH . G 4 HOH B 129 729 162 HOH HOH . G 4 HOH B 130 730 132 HOH HOH . G 4 HOH B 131 731 101 HOH HOH . G 4 HOH B 132 732 82 HOH HOH . G 4 HOH B 133 733 30 HOH HOH . G 4 HOH B 134 734 33 HOH HOH . G 4 HOH B 135 735 223 HOH HOH . G 4 HOH B 136 736 133 HOH HOH . G 4 HOH B 137 737 182 HOH HOH . G 4 HOH B 138 738 219 HOH HOH . G 4 HOH B 139 739 179 HOH HOH . G 4 HOH B 140 740 34 HOH HOH . G 4 HOH B 141 741 36 HOH HOH . G 4 HOH B 142 742 61 HOH HOH . G 4 HOH B 143 743 88 HOH HOH . G 4 HOH B 144 744 41 HOH HOH . G 4 HOH B 145 745 123 HOH HOH . G 4 HOH B 146 746 147 HOH HOH . G 4 HOH B 147 747 57 HOH HOH . G 4 HOH B 148 748 137 HOH HOH . G 4 HOH B 149 749 203 HOH HOH . G 4 HOH B 150 750 28 HOH HOH . G 4 HOH B 151 751 117 HOH HOH . G 4 HOH B 152 752 129 HOH HOH . G 4 HOH B 153 753 225 HOH HOH . G 4 HOH B 154 754 140 HOH HOH . G 4 HOH B 155 755 189 HOH HOH . G 4 HOH B 156 756 207 HOH HOH . G 4 HOH B 157 757 200 HOH HOH . G 4 HOH B 158 758 141 HOH HOH . G 4 HOH B 159 759 187 HOH HOH . G 4 HOH B 160 760 227 HOH HOH . G 4 HOH B 161 761 232 HOH HOH . G 4 HOH B 162 762 120 HOH HOH . G 4 HOH B 163 763 236 HOH HOH . G 4 HOH B 164 764 229 HOH HOH . G 4 HOH B 165 765 212 HOH HOH . G 4 HOH B 166 766 138 HOH HOH . G 4 HOH B 167 767 131 HOH HOH . G 4 HOH B 168 768 55 HOH HOH . G 4 HOH B 169 769 119 HOH HOH . G 4 HOH B 170 770 150 HOH HOH . G 4 HOH B 171 771 151 HOH HOH . G 4 HOH B 172 772 214 HOH HOH . G 4 HOH B 173 773 116 HOH HOH . G 4 HOH B 174 774 195 HOH HOH . G 4 HOH B 175 775 106 HOH HOH . G 4 HOH B 176 776 72 HOH HOH . G 4 HOH B 177 777 127 HOH HOH . G 4 HOH B 178 778 79 HOH HOH . G 4 HOH B 179 779 104 HOH HOH . G 4 HOH B 180 780 136 HOH HOH . G 4 HOH B 181 781 122 HOH HOH . G 4 HOH B 182 782 110 HOH HOH . G 4 HOH B 183 783 115 HOH HOH . G 4 HOH B 184 784 86 HOH HOH . G 4 HOH B 185 785 228 HOH HOH . G 4 HOH B 186 786 148 HOH HOH . G 4 HOH B 187 787 91 HOH HOH . G 4 HOH B 188 788 222 HOH HOH . G 4 HOH B 189 789 235 HOH HOH . G 4 HOH B 190 790 156 HOH HOH . G 4 HOH B 191 791 118 HOH HOH . G 4 HOH B 192 792 209 HOH HOH . G 4 HOH B 193 793 204 HOH HOH . G 4 HOH B 194 794 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNF . . . C 2 -0.169 -4.721 -32.008 1 34.13 ? C1 TNF 502 B 1 HETATM 2 C C2 TNF . . . C 2 -0.696 -4.194 -33.177 1 32.4 ? C2 TNF 502 B 1 HETATM 3 C C3 TNF . . . C 2 -2.056 -4.236 -33.414 1 29.68 ? C3 TNF 502 B 1 HETATM 4 C C4 TNF . . . C 2 -2.828 -4.866 -32.482 1 27.07 ? C4 TNF 502 B 1 HETATM 5 N N4 TNF . . . C 2 -4.255 -4.963 -32.704 1 31.52 ? N4 TNF 502 B 1 HETATM 6 N N2 TNF . . . C 2 0.094 -3.538 -34.186 1 39.27 ? N2 TNF 502 B 1 HETATM 7 O O1 TNF . . . C 2 1.187 -4.632 -31.77 1 35.12 ? O1 TNF 502 B 1 HETATM 8 O O21 TNF . . . C 2 1.45 -3.543 -34.085 1 40.54 ? O21 TNF 502 B 1 HETATM 9 O O22 TNF . . . C 2 -0.402 -3.05 -35.12 1 35.72 ? O22 TNF 502 B 1 HETATM 10 O O41 TNF . . . C 2 -4.958 -5.364 -31.609 1 30.85 ? O41 TNF 502 B 1 HETATM 11 C C6 TNF . . . C 2 -0.977 -5.366 -31.091 1 32.82 ? C6 TNF 502 B 1 HETATM 12 C C5 TNF . . . C 2 -2.311 -5.415 -31.368 1 28.71 ? C5 TNF 502 B 1 HETATM 13 O O42 TNF . . . C 2 -4.681 -4.74 -33.782 1 32.05 ? O42 TNF 502 B 1 HETATM 14 N N6 TNF . . . C 2 -0.493 -6.027 -29.893 1 35.91 ? N6 TNF 502 B 1 HETATM 15 O O61 TNF . . . C 2 0.849 -6.321 -29.804 1 31.41 ? O61 TNF 502 B 1 HETATM 16 O O62 TNF . . . C 2 -1.219 -6.438 -29.048 1 35.82 ? O62 TNF 502 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #