data_8TD6 # _model_server_result.job_id wIf2AxbXMqt-yXpu_J9f-w _model_server_result.datetime_utc '2024-11-29 00:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8td6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":402}' # _entry.id 8TD6 # _exptl.entry_id 8TD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[METHYLTHIO]ACETATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.72 _cell.angle_gamma 90 _cell.entry_id 8TD6 _cell.length_a 110.578 _cell.length_b 178.922 _cell.length_c 87.91 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C3 H5 O2 S -1' _chem_comp.formula_weight 105.136 _chem_comp.id MTG _chem_comp.mon_nstd_flag . _chem_comp.name '[METHYLTHIO]ACETATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C1 MTG doub 237 n n O6 C1 MTG sing 238 n n C1 C2 MTG sing 239 n n C2 S3 MTG sing 240 n n C2 H21 MTG sing 241 n n C2 H22 MTG sing 242 n n S3 C4 MTG sing 243 n n C4 H41 MTG sing 244 n n C4 H42 MTG sing 245 n n C4 H43 MTG sing 246 n n # _atom_sites.entry_id 8TD6 _atom_sites.fract_transf_matrix[1][1] 0.009043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAI A 1 401 401 NAI NAI . G 3 MTG A 1 402 402 MTG MTA . H 2 NAI B 1 401 401 NAI NAI . I 3 MTG B 1 402 402 MTG MTA . J 2 NAI C 1 401 401 NAI NAI . K 3 MTG C 1 402 402 MTG MTA . L 2 NAI D 1 401 401 NAI NAI . M 3 MTG D 1 402 402 MTG MTA . N 2 NAI E 1 401 401 NAI NAI . O 4 SO4 E 1 402 2 SO4 SO4 . P 5 HOH A 1 501 99 HOH HOH . P 5 HOH A 2 502 103 HOH HOH . P 5 HOH A 3 503 284 HOH HOH . P 5 HOH A 4 504 228 HOH HOH . P 5 HOH A 5 505 116 HOH HOH . P 5 HOH A 6 506 156 HOH HOH . P 5 HOH A 7 507 81 HOH HOH . P 5 HOH A 8 508 157 HOH HOH . P 5 HOH A 9 509 223 HOH HOH . P 5 HOH A 10 510 9 HOH HOH . P 5 HOH A 11 511 242 HOH HOH . P 5 HOH A 12 512 15 HOH HOH . P 5 HOH A 13 513 12 HOH HOH . P 5 HOH A 14 514 135 HOH HOH . P 5 HOH A 15 515 91 HOH HOH . P 5 HOH A 16 516 207 HOH HOH . P 5 HOH A 17 517 13 HOH HOH . P 5 HOH A 18 518 295 HOH HOH . P 5 HOH A 19 519 125 HOH HOH . P 5 HOH A 20 520 216 HOH HOH . P 5 HOH A 21 521 4 HOH HOH . P 5 HOH A 22 522 211 HOH HOH . P 5 HOH A 23 523 97 HOH HOH . P 5 HOH A 24 524 89 HOH HOH . P 5 HOH A 25 525 185 HOH HOH . P 5 HOH A 26 526 31 HOH HOH . P 5 HOH A 27 527 205 HOH HOH . P 5 HOH A 28 528 334 HOH HOH . P 5 HOH A 29 529 72 HOH HOH . P 5 HOH A 30 530 130 HOH HOH . P 5 HOH A 31 531 24 HOH HOH . P 5 HOH A 32 532 2 HOH HOH . P 5 HOH A 33 533 129 HOH HOH . P 5 HOH A 34 534 61 HOH HOH . P 5 HOH A 35 535 144 HOH HOH . P 5 HOH A 36 536 171 HOH HOH . P 5 HOH A 37 537 183 HOH HOH . P 5 HOH A 38 538 63 HOH HOH . P 5 HOH A 39 539 300 HOH HOH . P 5 HOH A 40 540 308 HOH HOH . P 5 HOH A 41 541 74 HOH HOH . P 5 HOH A 42 542 113 HOH HOH . P 5 HOH A 43 543 330 HOH HOH . P 5 HOH A 44 544 118 HOH HOH . P 5 HOH A 45 545 307 HOH HOH . P 5 HOH A 46 546 169 HOH HOH . P 5 HOH A 47 547 29 HOH HOH . P 5 HOH A 48 548 38 HOH HOH . P 5 HOH A 49 549 139 HOH HOH . P 5 HOH A 50 550 146 HOH HOH . P 5 HOH A 51 551 30 HOH HOH . P 5 HOH A 52 552 210 HOH HOH . P 5 HOH A 53 553 133 HOH HOH . P 5 HOH A 54 554 86 HOH HOH . P 5 HOH A 55 555 165 HOH HOH . P 5 HOH A 56 556 196 HOH HOH . P 5 HOH A 57 557 285 HOH HOH . P 5 HOH A 58 558 166 HOH HOH . P 5 HOH A 59 559 177 HOH HOH . P 5 HOH A 60 560 301 HOH HOH . P 5 HOH A 61 561 161 HOH HOH . P 5 HOH A 62 562 214 HOH HOH . P 5 HOH A 63 563 149 HOH HOH . P 5 HOH A 64 564 304 HOH HOH . P 5 HOH A 65 565 184 HOH HOH . P 5 HOH A 66 566 329 HOH HOH . P 5 HOH A 67 567 333 HOH HOH . P 5 HOH A 68 568 325 HOH HOH . P 5 HOH A 69 569 164 HOH HOH . P 5 HOH A 70 570 336 HOH HOH . P 5 HOH A 71 571 332 HOH HOH . P 5 HOH A 72 572 221 HOH HOH . P 5 HOH A 73 573 328 HOH HOH . P 5 HOH A 74 574 277 HOH HOH . Q 5 HOH B 1 501 28 HOH HOH . Q 5 HOH B 2 502 163 HOH HOH . Q 5 HOH B 3 503 85 HOH HOH . Q 5 HOH B 4 504 50 HOH HOH . Q 5 HOH B 5 505 48 HOH HOH . Q 5 HOH B 6 506 57 HOH HOH . Q 5 HOH B 7 507 150 HOH HOH . Q 5 HOH B 8 508 5 HOH HOH . Q 5 HOH B 9 509 136 HOH HOH . Q 5 HOH B 10 510 158 HOH HOH . Q 5 HOH B 11 511 87 HOH HOH . Q 5 HOH B 12 512 298 HOH HOH . Q 5 HOH B 13 513 155 HOH HOH . Q 5 HOH B 14 514 58 HOH HOH . Q 5 HOH B 15 515 96 HOH HOH . Q 5 HOH B 16 516 173 HOH HOH . Q 5 HOH B 17 517 37 HOH HOH . Q 5 HOH B 18 518 6 HOH HOH . Q 5 HOH B 19 519 190 HOH HOH . Q 5 HOH B 20 520 115 HOH HOH . Q 5 HOH B 21 521 202 HOH HOH . Q 5 HOH B 22 522 14 HOH HOH . Q 5 HOH B 23 523 53 HOH HOH . Q 5 HOH B 24 524 1 HOH HOH . Q 5 HOH B 25 525 18 HOH HOH . Q 5 HOH B 26 526 267 HOH HOH . Q 5 HOH B 27 527 109 HOH HOH . Q 5 HOH B 28 528 306 HOH HOH . Q 5 HOH B 29 529 22 HOH HOH . Q 5 HOH B 30 530 120 HOH HOH . Q 5 HOH B 31 531 305 HOH HOH . Q 5 HOH B 32 532 65 HOH HOH . Q 5 HOH B 33 533 128 HOH HOH . Q 5 HOH B 34 534 95 HOH HOH . Q 5 HOH B 35 535 80 HOH HOH . Q 5 HOH B 36 536 283 HOH HOH . Q 5 HOH B 37 537 261 HOH HOH . Q 5 HOH B 38 538 289 HOH HOH . Q 5 HOH B 39 539 11 HOH HOH . Q 5 HOH B 40 540 51 HOH HOH . Q 5 HOH B 41 541 331 HOH HOH . Q 5 HOH B 42 542 222 HOH HOH . Q 5 HOH B 43 543 132 HOH HOH . Q 5 HOH B 44 544 79 HOH HOH . Q 5 HOH B 45 545 39 HOH HOH . Q 5 HOH B 46 546 180 HOH HOH . Q 5 HOH B 47 547 337 HOH HOH . Q 5 HOH B 48 548 100 HOH HOH . Q 5 HOH B 49 549 303 HOH HOH . Q 5 HOH B 50 550 291 HOH HOH . Q 5 HOH B 51 551 233 HOH HOH . Q 5 HOH B 52 552 188 HOH HOH . Q 5 HOH B 53 553 251 HOH HOH . Q 5 HOH B 54 554 148 HOH HOH . Q 5 HOH B 55 555 273 HOH HOH . Q 5 HOH B 56 556 108 HOH HOH . Q 5 HOH B 57 557 293 HOH HOH . Q 5 HOH B 58 558 186 HOH HOH . Q 5 HOH B 59 559 140 HOH HOH . Q 5 HOH B 60 560 145 HOH HOH . Q 5 HOH B 61 561 335 HOH HOH . R 5 HOH C 1 501 315 HOH HOH . R 5 HOH C 2 502 84 HOH HOH . R 5 HOH C 3 503 114 HOH HOH . R 5 HOH C 4 504 19 HOH HOH . R 5 HOH C 5 505 36 HOH HOH . R 5 HOH C 6 506 64 HOH HOH . R 5 HOH C 7 507 69 HOH HOH . R 5 HOH C 8 508 236 HOH HOH . R 5 HOH C 9 509 17 HOH HOH . R 5 HOH C 10 510 94 HOH HOH . R 5 HOH C 11 511 47 HOH HOH . R 5 HOH C 12 512 176 HOH HOH . R 5 HOH C 13 513 20 HOH HOH . R 5 HOH C 14 514 54 HOH HOH . R 5 HOH C 15 515 49 HOH HOH . R 5 HOH C 16 516 322 HOH HOH . R 5 HOH C 17 517 286 HOH HOH . R 5 HOH C 18 518 117 HOH HOH . R 5 HOH C 19 519 10 HOH HOH . R 5 HOH C 20 520 127 HOH HOH . R 5 HOH C 21 521 257 HOH HOH . R 5 HOH C 22 522 33 HOH HOH . R 5 HOH C 23 523 126 HOH HOH . R 5 HOH C 24 524 319 HOH HOH . R 5 HOH C 25 525 215 HOH HOH . R 5 HOH C 26 526 290 HOH HOH . R 5 HOH C 27 527 296 HOH HOH . R 5 HOH C 28 528 234 HOH HOH . R 5 HOH C 29 529 312 HOH HOH . R 5 HOH C 30 530 225 HOH HOH . R 5 HOH C 31 531 299 HOH HOH . R 5 HOH C 32 532 294 HOH HOH . R 5 HOH C 33 533 178 HOH HOH . R 5 HOH C 34 534 316 HOH HOH . R 5 HOH C 35 535 323 HOH HOH . R 5 HOH C 36 536 181 HOH HOH . R 5 HOH C 37 537 212 HOH HOH . R 5 HOH C 38 538 317 HOH HOH . R 5 HOH C 39 539 213 HOH HOH . S 5 HOH D 1 501 56 HOH HOH . S 5 HOH D 2 502 8 HOH HOH . S 5 HOH D 3 503 55 HOH HOH . S 5 HOH D 4 504 104 HOH HOH . S 5 HOH D 5 505 43 HOH HOH . S 5 HOH D 6 506 203 HOH HOH . S 5 HOH D 7 507 112 HOH HOH . S 5 HOH D 8 508 309 HOH HOH . S 5 HOH D 9 509 71 HOH HOH . S 5 HOH D 10 510 45 HOH HOH . S 5 HOH D 11 511 313 HOH HOH . S 5 HOH D 12 512 238 HOH HOH . S 5 HOH D 13 513 154 HOH HOH . S 5 HOH D 14 514 46 HOH HOH . S 5 HOH D 15 515 93 HOH HOH . S 5 HOH D 16 516 311 HOH HOH . S 5 HOH D 17 517 151 HOH HOH . S 5 HOH D 18 518 27 HOH HOH . S 5 HOH D 19 519 122 HOH HOH . S 5 HOH D 20 520 175 HOH HOH . S 5 HOH D 21 521 143 HOH HOH . S 5 HOH D 22 522 73 HOH HOH . S 5 HOH D 23 523 292 HOH HOH . S 5 HOH D 24 524 111 HOH HOH . S 5 HOH D 25 525 101 HOH HOH . S 5 HOH D 26 526 66 HOH HOH . S 5 HOH D 27 527 310 HOH HOH . S 5 HOH D 28 528 174 HOH HOH . S 5 HOH D 29 529 254 HOH HOH . S 5 HOH D 30 530 121 HOH HOH . S 5 HOH D 31 531 124 HOH HOH . S 5 HOH D 32 532 160 HOH HOH . S 5 HOH D 33 533 34 HOH HOH . S 5 HOH D 34 534 42 HOH HOH . S 5 HOH D 35 535 172 HOH HOH . S 5 HOH D 36 536 193 HOH HOH . S 5 HOH D 37 537 41 HOH HOH . S 5 HOH D 38 538 324 HOH HOH . S 5 HOH D 39 539 232 HOH HOH . S 5 HOH D 40 540 302 HOH HOH . T 5 HOH E 1 501 98 HOH HOH . T 5 HOH E 2 502 338 HOH HOH . T 5 HOH E 3 503 170 HOH HOH . T 5 HOH E 4 504 32 HOH HOH . T 5 HOH E 5 505 16 HOH HOH . T 5 HOH E 6 506 92 HOH HOH . T 5 HOH E 7 507 60 HOH HOH . T 5 HOH E 8 508 35 HOH HOH . T 5 HOH E 9 509 297 HOH HOH . T 5 HOH E 10 510 83 HOH HOH . T 5 HOH E 11 511 241 HOH HOH . T 5 HOH E 12 512 206 HOH HOH . T 5 HOH E 13 513 314 HOH HOH . T 5 HOH E 14 514 62 HOH HOH . T 5 HOH E 15 515 131 HOH HOH . T 5 HOH E 16 516 77 HOH HOH . T 5 HOH E 17 517 90 HOH HOH . T 5 HOH E 18 518 159 HOH HOH . T 5 HOH E 19 519 40 HOH HOH . T 5 HOH E 20 520 7 HOH HOH . T 5 HOH E 21 521 256 HOH HOH . T 5 HOH E 22 522 147 HOH HOH . T 5 HOH E 23 523 141 HOH HOH . T 5 HOH E 24 524 23 HOH HOH . T 5 HOH E 25 525 235 HOH HOH . T 5 HOH E 26 526 25 HOH HOH . T 5 HOH E 27 527 52 HOH HOH . T 5 HOH E 28 528 252 HOH HOH . T 5 HOH E 29 529 110 HOH HOH . T 5 HOH E 30 530 321 HOH HOH . T 5 HOH E 31 531 187 HOH HOH . T 5 HOH E 32 532 119 HOH HOH . T 5 HOH E 33 533 208 HOH HOH . T 5 HOH E 34 534 3 HOH HOH . T 5 HOH E 35 535 21 HOH HOH . T 5 HOH E 36 536 326 HOH HOH . T 5 HOH E 37 537 68 HOH HOH . T 5 HOH E 38 538 327 HOH HOH . T 5 HOH E 39 539 275 HOH HOH . T 5 HOH E 40 540 192 HOH HOH . T 5 HOH E 41 541 123 HOH HOH . T 5 HOH E 42 542 191 HOH HOH . T 5 HOH E 43 543 237 HOH HOH . T 5 HOH E 44 544 102 HOH HOH . T 5 HOH E 45 545 78 HOH HOH . T 5 HOH E 46 546 106 HOH HOH . T 5 HOH E 47 547 153 HOH HOH . T 5 HOH E 48 548 137 HOH HOH . T 5 HOH E 49 549 320 HOH HOH . T 5 HOH E 50 550 105 HOH HOH . T 5 HOH E 51 551 194 HOH HOH . T 5 HOH E 52 552 246 HOH HOH . T 5 HOH E 53 553 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 MTG . . . M 3 1.507 144.793 16.899 0.9 44.4 ? O5 MTG 402 D 1 HETATM 2 O O6 MTG . . . M 3 1.336 143.584 18.738 0.9 53.38 -1 O6 MTG 402 D 1 HETATM 3 C C1 MTG . . . M 3 1.899 143.929 17.671 0.9 49.96 ? C1 MTG 402 D 1 HETATM 4 C C2 MTG . . . M 3 3.203 143.262 17.352 0.9 54 ? C2 MTG 402 D 1 HETATM 5 S S3 MTG . . . M 3 4.367 143.539 18.728 0.9 69.03 ? S3 MTG 402 D 1 HETATM 6 C C4 MTG . . . M 3 5.75 144.515 18.124 0.9 51.1 ? C4 MTG 402 D 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #