data_8TDU # _model_server_result.job_id VLtIEA9pGECjnC94S7hRDA _model_server_result.datetime_utc '2024-10-15 13:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 8TDU # _exptl.entry_id 8TDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.8 _cell.angle_gamma 90 _cell.entry_id 8TDU _cell.length_a 86.34 _cell.length_b 124.72 _cell.length_c 165.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,K 1 1 B,C,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C18 H19 F2 N5 O4' _chem_comp.formula_weight 407.371 _chem_comp.id X3N _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 X3N doub 376 n n O26 C27 X3N sing 377 n n O26 C25 X3N sing 378 n n C27 N22 X3N sing 379 n n C25 C23 X3N sing 380 n n N22 C23 X3N sing 381 n n N22 C20 X3N sing 382 n n C23 C29 X3N sing 383 n n C21 C20 X3N doub 384 n y C21 N17 X3N sing 385 n y C20 N19 X3N sing 386 n y N17 C16 X3N sing 387 n n N17 C18 X3N sing 388 n y C16 C15 X3N sing 389 n n N19 C18 X3N doub 390 n y F31 C29 X3N sing 391 n n C29 F30 X3N sing 392 n n C15 O14 X3N sing 393 n n C18 C11 X3N sing 394 n n C11 C10 X3N doub 395 n y C11 C12 X3N sing 396 n y O14 C12 X3N sing 397 n n C10 C9 X3N sing 398 n y C12 C13 X3N doub 399 n y C9 C8 X3N doub 400 n y C13 C8 X3N sing 401 n y N6 C4 X3N sing 402 n n C8 N7 X3N sing 403 n n C4 O5 X3N doub 404 n n C4 C2 X3N sing 405 n n N7 C2 X3N sing 406 n n C2 C1 X3N sing 407 n n C9 H1 X3N sing 408 n n C10 H2 X3N sing 409 n n C13 H4 X3N sing 410 n n C1 H5 X3N sing 411 n n C1 H6 X3N sing 412 n n C1 H7 X3N sing 413 n n C2 H3 X3N sing 414 n n N6 H8 X3N sing 415 n n N6 H9 X3N sing 416 n n N7 H10 X3N sing 417 n n C15 H11 X3N sing 418 n n C15 H12 X3N sing 419 n n C16 H13 X3N sing 420 n n C16 H14 X3N sing 421 n n C21 H15 X3N sing 422 n n C23 H24 X3N sing 423 n n C25 H16 X3N sing 424 n n C25 H17 X3N sing 425 n n C29 H18 X3N sing 426 n n # _atom_sites.entry_id 8TDU _atom_sites.fract_transf_matrix[1][1] 0.011582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000566 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 X3N A 1 1101 1 X3N LIG . F 4 ZWE A 1 1102 2 ZWE DRG . G 3 X3N C 1 1101 2 X3N LIG . H 4 ZWE C 1 1102 3 ZWE DRG . I 5 HOH A 1 1201 44 HOH HOH . I 5 HOH A 2 1202 46 HOH HOH . I 5 HOH A 3 1203 12 HOH HOH . I 5 HOH A 4 1204 3 HOH HOH . I 5 HOH A 5 1205 41 HOH HOH . I 5 HOH A 6 1206 27 HOH HOH . I 5 HOH A 7 1207 39 HOH HOH . I 5 HOH A 8 1208 33 HOH HOH . I 5 HOH A 9 1209 34 HOH HOH . I 5 HOH A 10 1210 36 HOH HOH . I 5 HOH A 11 1211 43 HOH HOH . I 5 HOH A 12 1212 45 HOH HOH . I 5 HOH A 13 1213 23 HOH HOH . I 5 HOH A 14 1214 1 HOH HOH . I 5 HOH A 15 1215 18 HOH HOH . I 5 HOH A 16 1216 6 HOH HOH . I 5 HOH A 17 1217 35 HOH HOH . I 5 HOH A 18 1218 40 HOH HOH . I 5 HOH A 19 1219 20 HOH HOH . I 5 HOH A 20 1220 19 HOH HOH . I 5 HOH A 21 1221 37 HOH HOH . I 5 HOH A 22 1222 7 HOH HOH . I 5 HOH A 23 1223 38 HOH HOH . I 5 HOH A 24 1224 10 HOH HOH . I 5 HOH A 25 1225 15 HOH HOH . I 5 HOH A 26 1226 28 HOH HOH . I 5 HOH A 27 1227 2 HOH HOH . I 5 HOH A 28 1228 31 HOH HOH . I 5 HOH A 29 1229 29 HOH HOH . I 5 HOH A 30 1230 21 HOH HOH . I 5 HOH A 31 1231 13 HOH HOH . I 5 HOH A 32 1232 14 HOH HOH . I 5 HOH A 33 1233 9 HOH HOH . I 5 HOH A 34 1234 4 HOH HOH . I 5 HOH A 35 1235 16 HOH HOH . J 5 HOH C 1 1201 24 HOH HOH . J 5 HOH C 2 1202 30 HOH HOH . J 5 HOH C 3 1203 42 HOH HOH . J 5 HOH C 4 1204 25 HOH HOH . J 5 HOH C 5 1205 11 HOH HOH . J 5 HOH C 6 1206 17 HOH HOH . J 5 HOH C 7 1207 22 HOH HOH . J 5 HOH C 8 1208 32 HOH HOH . J 5 HOH C 9 1209 5 HOH HOH . K 5 HOH B 1 601 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X3N . . . E 3 41.671 -15.595 81.866 1 53.32 ? C4 X3N 1101 A 1 HETATM 2 C C11 X3N . . . E 3 36.255 -15.276 82.098 1 60.35 ? C11 X3N 1101 A 1 HETATM 3 C C8 X3N . . . E 3 38.822 -14.245 81.665 1 59.6 ? C8 X3N 1101 A 1 HETATM 4 C C9 X3N . . . E 3 38.485 -15.512 81.239 1 62.71 ? C9 X3N 1101 A 1 HETATM 5 C C10 X3N . . . E 3 37.231 -16.005 81.453 1 63.74 ? C10 X3N 1101 A 1 HETATM 6 C C12 X3N . . . E 3 36.572 -13.974 82.543 1 60.2 ? C12 X3N 1101 A 1 HETATM 7 C C13 X3N . . . E 3 37.853 -13.484 82.311 1 60.98 ? C13 X3N 1101 A 1 HETATM 8 C C1 X3N . . . E 3 42.379 -13.748 80.449 1 50.84 ? C1 X3N 1101 A 1 HETATM 9 C C2 X3N . . . E 3 41.187 -14.588 80.862 1 52.78 ? C2 X3N 1101 A 1 HETATM 10 O O5 X3N . . . E 3 42.08 -16.663 81.497 1 54.2 ? O5 X3N 1101 A 1 HETATM 11 N N6 X3N . . . E 3 41.66 -15.342 83.181 1 58.63 ? N6 X3N 1101 A 1 HETATM 12 N N7 X3N . . . E 3 40.111 -13.745 81.431 1 58.29 ? N7 X3N 1101 A 1 HETATM 13 O O14 X3N . . . E 3 35.67 -13.213 83.198 1 59.55 ? O14 X3N 1101 A 1 HETATM 14 C C15 X3N . . . E 3 34.317 -13.179 82.812 1 63.19 ? C15 X3N 1101 A 1 HETATM 15 C C16 X3N . . . E 3 33.609 -14.294 83.546 1 61.6 ? C16 X3N 1101 A 1 HETATM 16 N N17 X3N . . . E 3 33.806 -15.554 82.857 1 61.94 ? N17 X3N 1101 A 1 HETATM 17 C C18 X3N . . . E 3 34.962 -15.98 82.237 1 63.54 ? C18 X3N 1101 A 1 HETATM 18 N N19 X3N . . . E 3 34.736 -17.174 81.756 1 61.88 ? N19 X3N 1101 A 1 HETATM 19 C C20 X3N . . . E 3 33.492 -17.558 82.015 1 59.1 ? C20 X3N 1101 A 1 HETATM 20 C C21 X3N . . . E 3 32.895 -16.56 82.716 1 59.95 ? C21 X3N 1101 A 1 HETATM 21 N N22 X3N . . . E 3 32.987 -18.809 81.665 1 59.39 ? N22 X3N 1101 A 1 HETATM 22 C C23 X3N . . . E 3 33.717 -19.831 80.907 1 63.87 ? C23 X3N 1101 A 1 HETATM 23 C C25 X3N . . . E 3 32.765 -21.038 80.904 1 64.57 ? C25 X3N 1101 A 1 HETATM 24 O O26 X3N . . . E 3 31.594 -20.556 81.609 1 64.11 ? O26 X3N 1101 A 1 HETATM 25 C C27 X3N . . . E 3 31.811 -19.318 82.036 1 63.66 ? C27 X3N 1101 A 1 HETATM 26 O O28 X3N . . . E 3 30.985 -18.726 82.691 1 71.85 ? O28 X3N 1101 A 1 HETATM 27 C C29 X3N . . . E 3 33.99 -19.407 79.467 1 71.8 ? C29 X3N 1101 A 1 HETATM 28 F F30 X3N . . . E 3 34.535 -20.494 78.787 1 78.2 ? F30 X3N 1101 A 1 HETATM 29 F F31 X3N . . . E 3 32.813 -19.027 78.814 1 73.73 ? F31 X3N 1101 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #