data_8TDU # _model_server_result.job_id PDNZyM_vijWYZONethXPVg _model_server_result.datetime_utc '2024-10-15 13:16:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 8TDU # _exptl.entry_id 8TDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.291 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(2-aminopyrimidin-5-yl)-N'-[(1R)-1-(5,7-difluoro-3-methyl-1-benzofuran-2-yl)-2,2,2-trifluoroethyl]urea" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.8 _cell.angle_gamma 90 _cell.entry_id 8TDU _cell.length_a 86.34 _cell.length_b 124.72 _cell.length_c 165.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,K 1 1 B,C,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C16 H12 F5 N5 O2' _chem_comp.formula_weight 401.291 _chem_comp.id ZWE _chem_comp.mon_nstd_flag . _chem_comp.name "N-(2-aminopyrimidin-5-yl)-N'-[(1R)-1-(5,7-difluoro-3-methyl-1-benzofuran-2-yl)-2,2,2-trifluoroethyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C7 ZWE sing 427 n n C7 C8 ZWE doub 428 n y C7 C6 ZWE sing 429 n y C8 C9 ZWE sing 430 n y C6 C5 ZWE doub 431 n y C9 C4 ZWE doub 432 n y C9 C2 ZWE sing 433 n y C5 C4 ZWE sing 434 n y C5 F1 ZWE sing 435 n n C1 C2 ZWE sing 436 n n C4 O1 ZWE sing 437 n y C2 C3 ZWE doub 438 n y O1 C3 ZWE sing 439 n y C3 C10 ZWE sing 440 n n C10 N1 ZWE sing 441 n n C10 C16 ZWE sing 442 n n C13 N3 ZWE doub 443 n y C13 C12 ZWE sing 444 n y N1 C11 ZWE sing 445 n n N3 C14 ZWE sing 446 n y F4 C16 ZWE sing 447 n n C11 O2 ZWE doub 448 n n C11 N2 ZWE sing 449 n n N2 C12 ZWE sing 450 n n C16 F3 ZWE sing 451 n n C16 F5 ZWE sing 452 n n C12 C15 ZWE doub 453 n y C14 N4 ZWE sing 454 n n C14 N5 ZWE doub 455 n y C15 N5 ZWE sing 456 n y C6 H1 ZWE sing 457 n n C8 H2 ZWE sing 458 n n C10 H3 ZWE sing 459 n n C13 H4 ZWE sing 460 n n N1 H5 ZWE sing 461 n n N2 H6 ZWE sing 462 n n C1 H7 ZWE sing 463 n n C1 H8 ZWE sing 464 n n C1 H9 ZWE sing 465 n n N4 H10 ZWE sing 466 n n N4 H11 ZWE sing 467 n n C15 H12 ZWE sing 468 n n # _atom_sites.entry_id 8TDU _atom_sites.fract_transf_matrix[1][1] 0.011582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000566 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 X3N A 1 1101 1 X3N LIG . F 4 ZWE A 1 1102 2 ZWE DRG . G 3 X3N C 1 1101 2 X3N LIG . H 4 ZWE C 1 1102 3 ZWE DRG . I 5 HOH A 1 1201 44 HOH HOH . I 5 HOH A 2 1202 46 HOH HOH . I 5 HOH A 3 1203 12 HOH HOH . I 5 HOH A 4 1204 3 HOH HOH . I 5 HOH A 5 1205 41 HOH HOH . I 5 HOH A 6 1206 27 HOH HOH . I 5 HOH A 7 1207 39 HOH HOH . I 5 HOH A 8 1208 33 HOH HOH . I 5 HOH A 9 1209 34 HOH HOH . I 5 HOH A 10 1210 36 HOH HOH . I 5 HOH A 11 1211 43 HOH HOH . I 5 HOH A 12 1212 45 HOH HOH . I 5 HOH A 13 1213 23 HOH HOH . I 5 HOH A 14 1214 1 HOH HOH . I 5 HOH A 15 1215 18 HOH HOH . I 5 HOH A 16 1216 6 HOH HOH . I 5 HOH A 17 1217 35 HOH HOH . I 5 HOH A 18 1218 40 HOH HOH . I 5 HOH A 19 1219 20 HOH HOH . I 5 HOH A 20 1220 19 HOH HOH . I 5 HOH A 21 1221 37 HOH HOH . I 5 HOH A 22 1222 7 HOH HOH . I 5 HOH A 23 1223 38 HOH HOH . I 5 HOH A 24 1224 10 HOH HOH . I 5 HOH A 25 1225 15 HOH HOH . I 5 HOH A 26 1226 28 HOH HOH . I 5 HOH A 27 1227 2 HOH HOH . I 5 HOH A 28 1228 31 HOH HOH . I 5 HOH A 29 1229 29 HOH HOH . I 5 HOH A 30 1230 21 HOH HOH . I 5 HOH A 31 1231 13 HOH HOH . I 5 HOH A 32 1232 14 HOH HOH . I 5 HOH A 33 1233 9 HOH HOH . I 5 HOH A 34 1234 4 HOH HOH . I 5 HOH A 35 1235 16 HOH HOH . J 5 HOH C 1 1201 24 HOH HOH . J 5 HOH C 2 1202 30 HOH HOH . J 5 HOH C 3 1203 42 HOH HOH . J 5 HOH C 4 1204 25 HOH HOH . J 5 HOH C 5 1205 11 HOH HOH . J 5 HOH C 6 1206 17 HOH HOH . J 5 HOH C 7 1207 22 HOH HOH . J 5 HOH C 8 1208 32 HOH HOH . J 5 HOH C 9 1209 5 HOH HOH . K 5 HOH B 1 601 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 ZWE . . . F 4 18.658 -21.64 91.192 1 53.16 ? C4 ZWE 1102 A 1 HETATM 2 C C14 ZWE . . . F 4 21.76 -29.711 95.368 1 77.73 ? C14 ZWE 1102 A 1 HETATM 3 C C5 ZWE . . . F 4 19.315 -20.626 90.546 1 51.91 ? C5 ZWE 1102 A 1 HETATM 4 C C6 ZWE . . . F 4 19.164 -20.468 89.188 1 52.75 ? C6 ZWE 1102 A 1 HETATM 5 C C11 ZWE . . . F 4 19.209 -25.503 94.645 1 62.39 ? C11 ZWE 1102 A 1 HETATM 6 C C7 ZWE . . . F 4 18.344 -21.316 88.463 1 55.81 ? C7 ZWE 1102 A 1 HETATM 7 C C8 ZWE . . . F 4 17.692 -22.35 89.106 1 55.73 ? C8 ZWE 1102 A 1 HETATM 8 C C9 ZWE . . . F 4 17.845 -22.512 90.478 1 55.23 ? C9 ZWE 1102 A 1 HETATM 9 C C10 ZWE . . . F 4 17.647 -23.691 94.004 1 59.21 ? C10 ZWE 1102 A 1 HETATM 10 C C12 ZWE . . . F 4 20.865 -27.199 95.152 1 67.26 ? C12 ZWE 1102 A 1 HETATM 11 C C13 ZWE . . . F 4 21.792 -27.723 94.251 1 69.66 ? C13 ZWE 1102 A 1 HETATM 12 N N1 ZWE . . . F 4 18.964 -24.209 94.369 1 59.94 ? N1 ZWE 1102 A 1 HETATM 13 N N2 ZWE . . . F 4 20.472 -25.872 94.927 1 64.46 ? N2 ZWE 1102 A 1 HETATM 14 C C3 ZWE . . . F 4 17.847 -23.08 92.649 1 57.2 ? C3 ZWE 1102 A 1 HETATM 15 N N3 ZWE . . . F 4 22.222 -28.962 94.383 1 75.84 ? N3 ZWE 1102 A 1 HETATM 16 C C1 ZWE . . . F 4 16.403 -24.594 91.186 1 66.63 ? C1 ZWE 1102 A 1 HETATM 17 C C2 ZWE . . . F 4 17.331 -23.452 91.473 1 59.09 ? C2 ZWE 1102 A 1 HETATM 18 O O1 ZWE . . . F 4 18.629 -22.018 92.468 1 55.89 ? O1 ZWE 1102 A 1 HETATM 19 F F1 ZWE . . . F 4 20.112 -19.818 91.277 1 55.6 ? F1 ZWE 1102 A 1 HETATM 20 F F2 ZWE . . . F 4 18.195 -21.142 87.121 1 64.91 ? F2 ZWE 1102 A 1 HETATM 21 O O2 ZWE . . . F 4 18.32 -26.318 94.66 1 68.27 ? O2 ZWE 1102 A 1 HETATM 22 N N4 ZWE . . . F 4 22.238 -30.998 95.46 1 84.44 ? N4 ZWE 1102 A 1 HETATM 23 N N5 ZWE . . . F 4 20.871 -29.267 96.253 1 75.4 ? N5 ZWE 1102 A 1 HETATM 24 C C15 ZWE . . . F 4 20.404 -28.026 96.175 1 73.63 ? C15 ZWE 1102 A 1 HETATM 25 C C16 ZWE . . . F 4 17.202 -22.588 94.981 1 61.08 ? C16 ZWE 1102 A 1 HETATM 26 F F3 ZWE . . . F 4 18.137 -21.557 95.06 1 62.65 ? F3 ZWE 1102 A 1 HETATM 27 F F4 ZWE . . . F 4 15.968 -22.014 94.597 1 62.15 ? F4 ZWE 1102 A 1 HETATM 28 F F5 ZWE . . . F 4 17.17 -23.154 96.255 1 59.04 ? F5 ZWE 1102 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #