data_8TE3 # _model_server_result.job_id ATrV11_xqU2x47JeygUipg _model_server_result.datetime_utc '2024-11-23 13:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8te3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 8TE3 # _exptl.entry_id 8TE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TE3 _cell.length_a 177.298 _cell.length_b 177.298 _cell.length_c 110.736 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,F,I,J 1 1 C,E,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 8TE3 _atom_sites.fract_transf_matrix[1][1] 0.00564 _atom_sites.fract_transf_matrix[1][2] 0.003256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAH A 1 1001 1001 SAH SAH . J 2 SAH B 1 1001 1001 SAH SAH . K 2 SAH C 1 1001 1001 SAH SAH . L 2 SAH D 1 1001 1001 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . K 2 22.683 -65.279 60.251 1 55.13 ? N SAH 1001 C 1 HETATM 2 C CA SAH . . . K 2 23.592 -66.264 59.678 1 49.66 ? CA SAH 1001 C 1 HETATM 3 C CB SAH . . . K 2 25.034 -65.769 59.788 1 44.12 ? CB SAH 1001 C 1 HETATM 4 C CG SAH . . . K 2 25.196 -64.302 60.187 1 37.84 ? CG SAH 1001 C 1 HETATM 5 S SD SAH . . . K 2 26.926 -63.826 60.448 1 59.15 ? SD SAH 1001 C 1 HETATM 6 C C SAH . . . K 2 23.418 -67.632 60.342 1 43.32 ? C SAH 1001 C 1 HETATM 7 O O SAH . . . K 2 22.481 -67.847 61.112 1 35.7 ? O SAH 1001 C 1 HETATM 8 O OXT SAH . . . K 2 24.19 -68.565 60.117 1 42.84 ? OXT SAH 1001 C 1 HETATM 9 C C5' SAH . . . K 2 26.953 -62.796 58.959 1 50.99 ? C5' SAH 1001 C 1 HETATM 10 C C4' SAH . . . K 2 27.263 -63.58 57.688 1 47.74 ? C4' SAH 1001 C 1 HETATM 11 O O4' SAH . . . K 2 27.347 -62.706 56.579 1 46.39 ? O4' SAH 1001 C 1 HETATM 12 C C3' SAH . . . K 2 28.594 -64.316 57.75 1 46.34 ? C3' SAH 1001 C 1 HETATM 13 O O3' SAH . . . K 2 28.371 -65.707 57.758 1 54.05 ? O3' SAH 1001 C 1 HETATM 14 C C2' SAH . . . K 2 29.329 -63.929 56.481 1 39.17 ? C2' SAH 1001 C 1 HETATM 15 O O2' SAH . . . K 2 29.811 -65.067 55.807 1 40.13 ? O2' SAH 1001 C 1 HETATM 16 C C1' SAH . . . K 2 28.272 -63.228 55.647 1 43.55 ? C1' SAH 1001 C 1 HETATM 17 N N9 SAH . . . K 2 28.854 -62.171 54.797 1 41.95 ? N9 SAH 1001 C 1 HETATM 18 C C8 SAH . . . K 2 29.908 -61.353 55.105 1 43.1 ? C8 SAH 1001 C 1 HETATM 19 N N7 SAH . . . K 2 30.131 -60.528 54.056 1 44.93 ? N7 SAH 1001 C 1 HETATM 20 C C5 SAH . . . K 2 29.237 -60.808 53.082 1 43.84 ? C5 SAH 1001 C 1 HETATM 21 C C6 SAH . . . K 2 29.022 -60.271 51.817 1 46 ? C6 SAH 1001 C 1 HETATM 22 N N6 SAH . . . K 2 29.786 -59.28 51.367 1 48.86 ? N6 SAH 1001 C 1 HETATM 23 N N1 SAH . . . K 2 28.01 -60.771 51.024 1 48.59 ? N1 SAH 1001 C 1 HETATM 24 C C2 SAH . . . K 2 27.217 -61.8 51.491 1 47.61 ? C2 SAH 1001 C 1 HETATM 25 N N3 SAH . . . K 2 27.436 -62.326 52.749 1 49.77 ? N3 SAH 1001 C 1 HETATM 26 C C4 SAH . . . K 2 28.43 -61.841 53.534 1 42.78 ? C4 SAH 1001 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #