data_8TF0 # _model_server_result.job_id y8dFybSvxISztzg8QpH77A _model_server_result.datetime_utc '2024-11-28 09:56:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":401}' # _entry.id 8TF0 # _exptl.entry_id 8TF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(pent-4-yn-1-yl)-8-[(2,4,6-trimethylphenyl)sulfanyl]-9H-purin-6-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TF0 _cell.length_a 96.282 _cell.length_b 104.392 _cell.length_c 172.284 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,N,LA 1 1 B,O,P,Q,R,S,T,U,V,W,X,MA 2 1 C,Y,Z,AA,NA 3 1 D,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,OA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 P N N ? 3 Y N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 2 B SER 66 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc2 A OE2 GLU 7 B GLU 71 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OD2 ASP 162 B ASP 226 1_555 I MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc4 LA O HOH . B HOH 518 3_645 HA MG MG . D MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc5 B OG SER 2 A SER 66 1_555 O MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc6 B OE2 GLU 7 A GLU 71 1_555 O MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc7 EA MG MG . D MG 404 1_555 OA O HOH . D HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 FA MG MG . D MG 405 1_555 OA O HOH . D HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc9 GA MG MG . D MG 406 1_555 OA O HOH . D HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C19 H21 N5 S' _chem_comp.formula_weight 351.469 _chem_comp.id ZUY _chem_comp.mon_nstd_flag . _chem_comp.name 9-(pent-4-yn-1-yl)-8-[(2,4,6-trimethylphenyl)sulfanyl]-9H-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S06 C07 ZUY sing 393 n n S06 C05 ZUY sing 394 n n C15 C14 ZUY sing 395 n n N04 C05 ZUY doub 396 n y N04 C03 ZUY sing 397 n y C14 C07 ZUY doub 398 n y C14 C13 ZUY sing 399 n y C07 C08 ZUY sing 400 n y C21 C20 ZUY trip 401 n n C05 N16 ZUY sing 402 n y N01 C02 ZUY sing 403 n n C09 C08 ZUY sing 404 n n C08 C10 ZUY doub 405 n y C13 C11 ZUY doub 406 n y C20 C19 ZUY sing 407 n n C03 C02 ZUY doub 408 n y C03 C22 ZUY sing 409 n y C10 C11 ZUY sing 410 n y C11 C12 ZUY sing 411 n n C02 N25 ZUY sing 412 n y N16 C22 ZUY sing 413 n y N16 C17 ZUY sing 414 n n C18 C19 ZUY sing 415 n n C18 C17 ZUY sing 416 n n C22 N23 ZUY doub 417 n y N25 C24 ZUY doub 418 n y N23 C24 ZUY sing 419 n y C10 H1 ZUY sing 420 n n C13 H2 ZUY sing 421 n n C15 H3 ZUY sing 422 n n C15 H4 ZUY sing 423 n n C15 H5 ZUY sing 424 n n C17 H6 ZUY sing 425 n n C17 H7 ZUY sing 426 n n C21 H8 ZUY sing 427 n n C24 H9 ZUY sing 428 n n C09 H10 ZUY sing 429 n n C09 H11 ZUY sing 430 n n C09 H12 ZUY sing 431 n n C12 H13 ZUY sing 432 n n C12 H14 ZUY sing 433 n n C12 H15 ZUY sing 434 n n C18 H16 ZUY sing 435 n n C18 H17 ZUY sing 436 n n C19 H18 ZUY sing 437 n n C19 H19 ZUY sing 438 n n N01 H20 ZUY sing 439 n n N01 H21 ZUY sing 440 n n # _atom_sites.entry_id 8TF0 _atom_sites.fract_transf_matrix[1][1] 0.010386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG B 1 401 401 MG MG . F 3 ZUY B 1 402 501 ZUY LIG . G 4 GOL B 1 403 601 GOL GOL . H 2 MG B 1 404 4 MG MG . I 2 MG B 1 405 14 MG MG . J 5 SO4 B 1 406 3 SO4 SO4 . K 5 SO4 B 1 407 4 SO4 SO4 . L 5 SO4 B 1 408 5 SO4 SO4 . M 5 SO4 B 1 409 11 SO4 SO4 . N 5 SO4 B 1 410 12 SO4 SO4 . O 2 MG A 1 401 401 MG MG . P 3 ZUY A 1 402 601 ZUY LIG . Q 4 GOL A 1 403 701 GOL GOL . R 4 GOL A 1 404 801 GOL GOL . S 2 MG A 1 405 2 MG MG . T 2 MG A 1 406 11 MG MG . U 2 MG A 1 407 12 MG MG . V 5 SO4 A 1 408 1 SO4 SO4 . W 5 SO4 A 1 409 8 SO4 SO4 . X 5 SO4 A 1 410 14 SO4 SO4 . Y 3 ZUY C 1 401 401 ZUY LIG . Z 5 SO4 C 1 402 6 SO4 SO4 . AA 5 SO4 C 1 403 7 SO4 SO4 . BA 3 ZUY D 1 401 401 ZUY LIG . CA 4 GOL D 1 402 501 GOL GOL . DA 6 MN D 1 403 601 MN MN . EA 2 MG D 1 404 9 MG MG . FA 2 MG D 1 405 10 MG MG . GA 2 MG D 1 406 15 MG MG . HA 2 MG D 1 407 16 MG MG . IA 5 SO4 D 1 408 9 SO4 SO4 . JA 5 SO4 D 1 409 10 SO4 SO4 . KA 5 SO4 D 1 410 13 SO4 SO4 . LA 7 HOH B 1 501 71 HOH HOH . LA 7 HOH B 2 502 21 HOH HOH . LA 7 HOH B 3 503 68 HOH HOH . LA 7 HOH B 4 504 55 HOH HOH . LA 7 HOH B 5 505 73 HOH HOH . LA 7 HOH B 6 506 75 HOH HOH . LA 7 HOH B 7 507 22 HOH HOH . LA 7 HOH B 8 508 64 HOH HOH . LA 7 HOH B 9 509 40 HOH HOH . LA 7 HOH B 10 510 41 HOH HOH . LA 7 HOH B 11 511 57 HOH HOH . LA 7 HOH B 12 512 83 HOH HOH . LA 7 HOH B 13 513 44 HOH HOH . LA 7 HOH B 14 514 74 HOH HOH . LA 7 HOH B 15 515 72 HOH HOH . LA 7 HOH B 16 516 11 HOH HOH . LA 7 HOH B 17 517 14 HOH HOH . LA 7 HOH B 18 518 80 HOH HOH . LA 7 HOH B 19 519 52 HOH HOH . LA 7 HOH B 20 520 56 HOH HOH . LA 7 HOH B 21 521 69 HOH HOH . LA 7 HOH B 22 522 13 HOH HOH . LA 7 HOH B 23 523 82 HOH HOH . LA 7 HOH B 24 524 67 HOH HOH . LA 7 HOH B 25 525 10 HOH HOH . LA 7 HOH B 26 526 39 HOH HOH . LA 7 HOH B 27 527 42 HOH HOH . LA 7 HOH B 28 528 58 HOH HOH . LA 7 HOH B 29 529 70 HOH HOH . LA 7 HOH B 30 530 59 HOH HOH . LA 7 HOH B 31 531 79 HOH HOH . MA 7 HOH A 1 501 36 HOH HOH . MA 7 HOH A 2 502 50 HOH HOH . MA 7 HOH A 3 503 65 HOH HOH . MA 7 HOH A 4 504 501 HOH HOH . MA 7 HOH A 5 505 2 HOH HOH . MA 7 HOH A 6 506 7 HOH HOH . MA 7 HOH A 7 507 5 HOH HOH . MA 7 HOH A 8 508 23 HOH HOH . MA 7 HOH A 9 509 54 HOH HOH . NA 7 HOH C 1 501 66 HOH HOH . NA 7 HOH C 2 502 86 HOH HOH . NA 7 HOH C 3 503 85 HOH HOH . NA 7 HOH C 4 504 78 HOH HOH . NA 7 HOH C 5 505 47 HOH HOH . NA 7 HOH C 6 506 87 HOH HOH . NA 7 HOH C 7 507 46 HOH HOH . NA 7 HOH C 8 508 48 HOH HOH . NA 7 HOH C 9 509 84 HOH HOH . NA 7 HOH C 10 510 77 HOH HOH . OA 7 HOH D 1 501 45 HOH HOH . OA 7 HOH D 2 502 88 HOH HOH . OA 7 HOH D 3 503 62 HOH HOH . OA 7 HOH D 4 504 28 HOH HOH . OA 7 HOH D 5 505 29 HOH HOH . OA 7 HOH D 6 506 60 HOH HOH . OA 7 HOH D 7 507 3 HOH HOH . OA 7 HOH D 8 508 31 HOH HOH . OA 7 HOH D 9 509 81 HOH HOH . OA 7 HOH D 10 510 15 HOH HOH . OA 7 HOH D 11 511 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ZUY . . . BA 3 39.488 -19.532 45.944 1 75.8 ? C10 ZUY 401 D 1 HETATM 2 C C13 ZUY . . . BA 3 39.616 -21.568 47.203 1 65.25 ? C13 ZUY 401 D 1 HETATM 3 C C15 ZUY . . . BA 3 38.567 -23.708 46.415 1 66.93 ? C15 ZUY 401 D 1 HETATM 4 C C17 ZUY . . . BA 3 35.861 -24.703 42.507 1 74.39 ? C17 ZUY 401 D 1 HETATM 5 C C20 ZUY . . . BA 3 34.679 -27.225 39.801 1 109.14 ? C20 ZUY 401 D 1 HETATM 6 C C21 ZUY . . . BA 3 33.974 -27.802 39.045 1 97.62 ? C21 ZUY 401 D 1 HETATM 7 C C22 ZUY . . . BA 3 34.319 -24.578 44.543 1 80.31 ? C22 ZUY 401 D 1 HETATM 8 C C24 ZUY . . . BA 3 32.412 -25.691 45.338 1 71.06 ? C24 ZUY 401 D 1 HETATM 9 C C02 ZUY . . . BA 3 33.285 -23.987 46.626 1 64.05 ? C02 ZUY 401 D 1 HETATM 10 C C03 ZUY . . . BA 3 34.31 -23.784 45.655 1 68.8 ? C03 ZUY 401 D 1 HETATM 11 C C05 ZUY . . . BA 3 36.001 -23.187 44.414 1 73.02 ? C05 ZUY 401 D 1 HETATM 12 C C07 ZUY . . . BA 3 38.445 -21.531 45.104 1 79.03 ? C07 ZUY 401 D 1 HETATM 13 C C08 ZUY . . . BA 3 38.754 -20.187 44.966 1 73.42 ? C08 ZUY 401 D 1 HETATM 14 C C09 ZUY . . . BA 3 38.278 -19.422 43.733 1 67.55 ? C09 ZUY 401 D 1 HETATM 15 C C11 ZUY . . . BA 3 39.919 -20.223 47.063 1 74.9 ? C11 ZUY 401 D 1 HETATM 16 C C12 ZUY . . . BA 3 40.727 -19.503 48.139 1 57.18 ? C12 ZUY 401 D 1 HETATM 17 C C14 ZUY . . . BA 3 38.882 -22.226 46.227 1 69.99 ? C14 ZUY 401 D 1 HETATM 18 C C18 ZUY . . . BA 3 34.856 -25.519 41.695 1 93.11 ? C18 ZUY 401 D 1 HETATM 19 C C19 ZUY . . . BA 3 35.598 -26.482 40.77 1 116.11 ? C19 ZUY 401 D 1 HETATM 20 N N01 ZUY . . . BA 3 33.232 -23.165 47.822 1 56.97 ? N01 ZUY 401 D 1 HETATM 21 N N04 ZUY . . . BA 3 35.359 -22.928 45.556 1 78.57 ? N04 ZUY 401 D 1 HETATM 22 N N16 ZUY . . . BA 3 35.386 -24.187 43.783 1 76.72 ? N16 ZUY 401 D 1 HETATM 23 N N23 ZUY . . . BA 3 33.348 -25.532 44.419 1 80.98 ? N23 ZUY 401 D 1 HETATM 24 N N25 ZUY . . . BA 3 32.379 -24.933 46.426 1 67.12 ? N25 ZUY 401 D 1 HETATM 25 S S06 ZUY . . . BA 3 37.484 -22.339 43.785 1 71.15 ? S06 ZUY 401 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #