data_8TF5 # _model_server_result.job_id UoNntSypWicw0aOQTErRcg _model_server_result.datetime_utc '2024-12-13 17:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 8TF5 # _exptl.entry_id 8TF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TF5 _cell.length_a 57.033 _cell.length_b 96.867 _cell.length_c 97.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 L N N ? 2 M N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 209 1_555 A SG CYS 185 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A C ILE 217 A ILE 248 1_555 A N YCM 218 A YCM 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C YCM 218 A YCM 249 1_555 A N GLN 219 A GLN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 8TF5 _atom_sites.fract_transf_matrix[1][1] 0.017534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 1201 501 OLC OLC . C 2 OLC A 1 1202 1901 OLC OLC . D 3 P15 A 1 1203 2001 P15 P15 . E 4 OLA A 1 1204 2101 OLA OLA . F 3 P15 A 1 1205 2301 P15 P15 . G 4 OLA A 1 1206 2401 OLA OLA . H 4 OLA A 1 1207 2501 OLA OLA . I 4 OLA A 1 1208 2801 OLA OLA . J 4 OLA A 1 1209 2901 OLA OLA . K 4 OLA A 1 1210 3001 OLA OLA . L 2 OLC A 1 1211 3002 OLC OLC . M 2 OLC A 1 1212 3003 OLC OLC . N 4 OLA A 1 1213 3004 OLA OLA . O 2 OLC A 1 1214 3005 OLC OLC . P 4 OLA A 1 1215 3006 OLA OLA . Q 4 OLA A 1 1216 3007 OLA OLA . R 4 OLA A 1 1217 3008 OLA OLA . S 4 OLA A 1 1218 2101 OLA OLA . T 4 OLA A 1 1219 2201 OLA OLA . U 5 CLR A 1 1220 2901 CLR CLR . V 6 HOH A 1 1301 95 HOH HOH . V 6 HOH A 2 1302 157 HOH HOH . V 6 HOH A 3 1303 123 HOH HOH . V 6 HOH A 4 1304 145 HOH HOH . V 6 HOH A 5 1305 147 HOH HOH . V 6 HOH A 6 1306 10 HOH HOH . V 6 HOH A 7 1307 109 HOH HOH . V 6 HOH A 8 1308 132 HOH HOH . V 6 HOH A 9 1309 2 HOH HOH . V 6 HOH A 10 1310 156 HOH HOH . V 6 HOH A 11 1311 154 HOH HOH . V 6 HOH A 12 1312 1 HOH HOH . V 6 HOH A 13 1313 22 HOH HOH . V 6 HOH A 14 1314 153 HOH HOH . V 6 HOH A 15 1315 12 HOH HOH . V 6 HOH A 16 1316 138 HOH HOH . V 6 HOH A 17 1317 124 HOH HOH . V 6 HOH A 18 1318 7 HOH HOH . V 6 HOH A 19 1319 9 HOH HOH . V 6 HOH A 20 1320 122 HOH HOH . V 6 HOH A 21 1321 135 HOH HOH . V 6 HOH A 22 1322 3 HOH HOH . V 6 HOH A 23 1323 6 HOH HOH . V 6 HOH A 24 1324 143 HOH HOH . V 6 HOH A 25 1325 119 HOH HOH . V 6 HOH A 26 1326 151 HOH HOH . V 6 HOH A 27 1327 96 HOH HOH . V 6 HOH A 28 1328 158 HOH HOH . V 6 HOH A 29 1329 137 HOH HOH . V 6 HOH A 30 1330 58 HOH HOH . V 6 HOH A 31 1331 75 HOH HOH . V 6 HOH A 32 1332 148 HOH HOH . V 6 HOH A 33 1333 146 HOH HOH . V 6 HOH A 34 1334 163 HOH HOH . V 6 HOH A 35 1335 11 HOH HOH . V 6 HOH A 36 1336 121 HOH HOH . V 6 HOH A 37 1337 128 HOH HOH . V 6 HOH A 38 1338 82 HOH HOH . V 6 HOH A 39 1339 65 HOH HOH . V 6 HOH A 40 1340 160 HOH HOH . V 6 HOH A 41 1341 130 HOH HOH . V 6 HOH A 42 1342 159 HOH HOH . V 6 HOH A 43 1343 149 HOH HOH . V 6 HOH A 44 1344 94 HOH HOH . V 6 HOH A 45 1345 161 HOH HOH . V 6 HOH A 46 1346 144 HOH HOH . V 6 HOH A 47 1347 140 HOH HOH . V 6 HOH A 48 1348 120 HOH HOH . V 6 HOH A 49 1349 29 HOH HOH . V 6 HOH A 50 1350 4 HOH HOH . V 6 HOH A 51 1351 136 HOH HOH . V 6 HOH A 52 1352 127 HOH HOH . V 6 HOH A 53 1353 74 HOH HOH . V 6 HOH A 54 1354 19 HOH HOH . V 6 HOH A 55 1355 150 HOH HOH . V 6 HOH A 56 1356 101 HOH HOH . V 6 HOH A 57 1357 125 HOH HOH . V 6 HOH A 58 1358 116 HOH HOH . V 6 HOH A 59 1359 142 HOH HOH . V 6 HOH A 60 1360 48 HOH HOH . V 6 HOH A 61 1361 111 HOH HOH . V 6 HOH A 62 1362 83 HOH HOH . V 6 HOH A 63 1363 162 HOH HOH . V 6 HOH A 64 1364 152 HOH HOH . V 6 HOH A 65 1365 133 HOH HOH . V 6 HOH A 66 1366 105 HOH HOH . V 6 HOH A 67 1367 98 HOH HOH . V 6 HOH A 68 1368 118 HOH HOH . V 6 HOH A 69 1369 80 HOH HOH . V 6 HOH A 70 1370 41 HOH HOH . V 6 HOH A 71 1371 155 HOH HOH . V 6 HOH A 72 1372 141 HOH HOH . V 6 HOH A 73 1373 117 HOH HOH . V 6 HOH A 74 1374 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . C 2 25.733 31.766 50.035 1 50.21 ? C18 OLC 1202 A 1 HETATM 2 C C10 OLC . . . C 2 23.45 32.449 42.258 1 84.43 ? C10 OLC 1202 A 1 HETATM 3 C C9 OLC . . . C 2 24.172 32.362 41.128 1 78.5 ? C9 OLC 1202 A 1 HETATM 4 C C17 OLC . . . C 2 25.549 31.981 48.547 1 60.39 ? C17 OLC 1202 A 1 HETATM 5 C C11 OLC . . . C 2 22.333 31.516 42.603 1 89.32 ? C11 OLC 1202 A 1 HETATM 6 C C8 OLC . . . C 2 23.956 31.321 40.073 1 82.55 ? C8 OLC 1202 A 1 HETATM 7 C C24 OLC . . . C 2 24.943 34.134 28.896 1 106.08 ? C24 OLC 1202 A 1 HETATM 8 C C16 OLC . . . C 2 24.242 31.353 48.098 1 81.65 ? C16 OLC 1202 A 1 HETATM 9 C C12 OLC . . . C 2 22.575 30.904 43.968 1 82.28 ? C12 OLC 1202 A 1 HETATM 10 C C7 OLC . . . C 2 24.013 31.966 38.696 1 66.3 ? C7 OLC 1202 A 1 HETATM 11 C C15 OLC . . . C 2 23.908 31.718 46.661 1 73.24 ? C15 OLC 1202 A 1 HETATM 12 C C13 OLC . . . C 2 22.026 31.837 45.031 1 63.52 ? C13 OLC 1202 A 1 HETATM 13 C C6 OLC . . . C 2 23.95 30.884 37.629 1 70.94 ? C6 OLC 1202 A 1 HETATM 14 C C14 OLC . . . C 2 22.454 31.346 46.397 1 77.44 ? C14 OLC 1202 A 1 HETATM 15 C C5 OLC . . . C 2 23.744 31.518 36.262 1 70.82 ? C5 OLC 1202 A 1 HETATM 16 C C4 OLC . . . C 2 22.321 32.047 36.13 1 80.14 ? C4 OLC 1202 A 1 HETATM 17 C C3 OLC . . . C 2 21.88 31.891 34.687 1 76.19 ? C3 OLC 1202 A 1 HETATM 18 C C2 OLC . . . C 2 22.736 32.739 33.756 1 73.56 ? C2 OLC 1202 A 1 HETATM 19 C C21 OLC . . . C 2 23.649 33.41 30.902 1 96.72 ? C21 OLC 1202 A 1 HETATM 20 C C1 OLC . . . C 2 22.029 32.736 32.445 1 98.14 ? C1 OLC 1202 A 1 HETATM 21 C C22 OLC . . . C 2 23.741 34.492 29.81 1 98.97 ? C22 OLC 1202 A 1 HETATM 22 O O19 OLC . . . C 2 21.137 31.977 32.093 1 90.84 ? O19 OLC 1202 A 1 HETATM 23 O O25 OLC . . . C 2 24.833 35.009 27.812 1 101.16 ? O25 OLC 1202 A 1 HETATM 24 O O23 OLC . . . C 2 22.557 34.568 29.095 1 100.04 ? O23 OLC 1202 A 1 HETATM 25 O O20 OLC . . . C 2 22.441 33.703 31.58 1 110.59 ? O20 OLC 1202 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #