data_8TF5 # _model_server_result.job_id HCbx5anDwiQ8eNiwh4u1zg _model_server_result.datetime_utc '2024-12-13 17:49:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1220}' # _entry.id 8TF5 # _exptl.entry_id 8TF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TF5 _cell.length_a 57.033 _cell.length_b 96.867 _cell.length_c 97.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 209 1_555 A SG CYS 185 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A C ILE 217 A ILE 248 1_555 A N YCM 218 A YCM 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C YCM 218 A YCM 249 1_555 A N GLN 219 A GLN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8TF5 _atom_sites.fract_transf_matrix[1][1] 0.017534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 1201 501 OLC OLC . C 2 OLC A 1 1202 1901 OLC OLC . D 3 P15 A 1 1203 2001 P15 P15 . E 4 OLA A 1 1204 2101 OLA OLA . F 3 P15 A 1 1205 2301 P15 P15 . G 4 OLA A 1 1206 2401 OLA OLA . H 4 OLA A 1 1207 2501 OLA OLA . I 4 OLA A 1 1208 2801 OLA OLA . J 4 OLA A 1 1209 2901 OLA OLA . K 4 OLA A 1 1210 3001 OLA OLA . L 2 OLC A 1 1211 3002 OLC OLC . M 2 OLC A 1 1212 3003 OLC OLC . N 4 OLA A 1 1213 3004 OLA OLA . O 2 OLC A 1 1214 3005 OLC OLC . P 4 OLA A 1 1215 3006 OLA OLA . Q 4 OLA A 1 1216 3007 OLA OLA . R 4 OLA A 1 1217 3008 OLA OLA . S 4 OLA A 1 1218 2101 OLA OLA . T 4 OLA A 1 1219 2201 OLA OLA . U 5 CLR A 1 1220 2901 CLR CLR . V 6 HOH A 1 1301 95 HOH HOH . V 6 HOH A 2 1302 157 HOH HOH . V 6 HOH A 3 1303 123 HOH HOH . V 6 HOH A 4 1304 145 HOH HOH . V 6 HOH A 5 1305 147 HOH HOH . V 6 HOH A 6 1306 10 HOH HOH . V 6 HOH A 7 1307 109 HOH HOH . V 6 HOH A 8 1308 132 HOH HOH . V 6 HOH A 9 1309 2 HOH HOH . V 6 HOH A 10 1310 156 HOH HOH . V 6 HOH A 11 1311 154 HOH HOH . V 6 HOH A 12 1312 1 HOH HOH . V 6 HOH A 13 1313 22 HOH HOH . V 6 HOH A 14 1314 153 HOH HOH . V 6 HOH A 15 1315 12 HOH HOH . V 6 HOH A 16 1316 138 HOH HOH . V 6 HOH A 17 1317 124 HOH HOH . V 6 HOH A 18 1318 7 HOH HOH . V 6 HOH A 19 1319 9 HOH HOH . V 6 HOH A 20 1320 122 HOH HOH . V 6 HOH A 21 1321 135 HOH HOH . V 6 HOH A 22 1322 3 HOH HOH . V 6 HOH A 23 1323 6 HOH HOH . V 6 HOH A 24 1324 143 HOH HOH . V 6 HOH A 25 1325 119 HOH HOH . V 6 HOH A 26 1326 151 HOH HOH . V 6 HOH A 27 1327 96 HOH HOH . V 6 HOH A 28 1328 158 HOH HOH . V 6 HOH A 29 1329 137 HOH HOH . V 6 HOH A 30 1330 58 HOH HOH . V 6 HOH A 31 1331 75 HOH HOH . V 6 HOH A 32 1332 148 HOH HOH . V 6 HOH A 33 1333 146 HOH HOH . V 6 HOH A 34 1334 163 HOH HOH . V 6 HOH A 35 1335 11 HOH HOH . V 6 HOH A 36 1336 121 HOH HOH . V 6 HOH A 37 1337 128 HOH HOH . V 6 HOH A 38 1338 82 HOH HOH . V 6 HOH A 39 1339 65 HOH HOH . V 6 HOH A 40 1340 160 HOH HOH . V 6 HOH A 41 1341 130 HOH HOH . V 6 HOH A 42 1342 159 HOH HOH . V 6 HOH A 43 1343 149 HOH HOH . V 6 HOH A 44 1344 94 HOH HOH . V 6 HOH A 45 1345 161 HOH HOH . V 6 HOH A 46 1346 144 HOH HOH . V 6 HOH A 47 1347 140 HOH HOH . V 6 HOH A 48 1348 120 HOH HOH . V 6 HOH A 49 1349 29 HOH HOH . V 6 HOH A 50 1350 4 HOH HOH . V 6 HOH A 51 1351 136 HOH HOH . V 6 HOH A 52 1352 127 HOH HOH . V 6 HOH A 53 1353 74 HOH HOH . V 6 HOH A 54 1354 19 HOH HOH . V 6 HOH A 55 1355 150 HOH HOH . V 6 HOH A 56 1356 101 HOH HOH . V 6 HOH A 57 1357 125 HOH HOH . V 6 HOH A 58 1358 116 HOH HOH . V 6 HOH A 59 1359 142 HOH HOH . V 6 HOH A 60 1360 48 HOH HOH . V 6 HOH A 61 1361 111 HOH HOH . V 6 HOH A 62 1362 83 HOH HOH . V 6 HOH A 63 1363 162 HOH HOH . V 6 HOH A 64 1364 152 HOH HOH . V 6 HOH A 65 1365 133 HOH HOH . V 6 HOH A 66 1366 105 HOH HOH . V 6 HOH A 67 1367 98 HOH HOH . V 6 HOH A 68 1368 118 HOH HOH . V 6 HOH A 69 1369 80 HOH HOH . V 6 HOH A 70 1370 41 HOH HOH . V 6 HOH A 71 1371 155 HOH HOH . V 6 HOH A 72 1372 141 HOH HOH . V 6 HOH A 73 1373 117 HOH HOH . V 6 HOH A 74 1374 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . U 5 37.109 17.824 39.064 1 33.31 ? C1 CLR 1220 A 1 HETATM 2 C C2 CLR . . . U 5 36.938 17.746 37.55 1 36 ? C2 CLR 1220 A 1 HETATM 3 C C3 CLR . . . U 5 35.908 18.765 37.087 1 34.68 ? C3 CLR 1220 A 1 HETATM 4 C C4 CLR . . . U 5 36.387 20.164 37.441 1 35.8 ? C4 CLR 1220 A 1 HETATM 5 C C5 CLR . . . U 5 36.721 20.254 38.914 1 38.84 ? C5 CLR 1220 A 1 HETATM 6 C C6 CLR . . . U 5 36.25 21.309 39.597 1 35.25 ? C6 CLR 1220 A 1 HETATM 7 C C7 CLR . . . U 5 36.626 21.623 41.026 1 35.83 ? C7 CLR 1220 A 1 HETATM 8 C C8 CLR . . . U 5 37.678 20.684 41.594 1 32.51 ? C8 CLR 1220 A 1 HETATM 9 C C9 CLR . . . U 5 37.505 19.264 41.064 1 31.76 ? C9 CLR 1220 A 1 HETATM 10 C C10 CLR . . . U 5 37.598 19.194 39.537 1 34.08 ? C10 CLR 1220 A 1 HETATM 11 C C11 CLR . . . U 5 38.483 18.313 41.759 1 30.22 ? C11 CLR 1220 A 1 HETATM 12 C C12 CLR . . . U 5 38.37 18.365 43.287 1 33.54 ? C12 CLR 1220 A 1 HETATM 13 C C13 CLR . . . U 5 38.569 19.779 43.818 1 29.62 ? C13 CLR 1220 A 1 HETATM 14 C C14 CLR . . . U 5 37.55 20.657 43.108 1 30.66 ? C14 CLR 1220 A 1 HETATM 15 C C15 CLR . . . U 5 37.633 21.985 43.851 1 39.85 ? C15 CLR 1220 A 1 HETATM 16 C C16 CLR . . . U 5 37.892 21.557 45.299 1 39.08 ? C16 CLR 1220 A 1 HETATM 17 C C17 CLR . . . U 5 38.185 20.047 45.273 1 28.78 ? C17 CLR 1220 A 1 HETATM 18 C C18 CLR . . . U 5 39.999 20.27 43.565 1 33.02 ? C18 CLR 1220 A 1 HETATM 19 C C19 CLR . . . U 5 39.017 19.429 39.03 1 35.36 ? C19 CLR 1220 A 1 HETATM 20 C C20 CLR . . . U 5 39.178 19.636 46.362 1 31.94 ? C20 CLR 1220 A 1 HETATM 21 C C21 CLR . . . U 5 39.481 18.14 46.307 1 30.02 ? C21 CLR 1220 A 1 HETATM 22 C C22 CLR . . . U 5 38.704 20.011 47.774 1 30.26 ? C22 CLR 1220 A 1 HETATM 23 C C23 CLR . . . U 5 37.304 19.491 48.114 1 32.89 ? C23 CLR 1220 A 1 HETATM 24 C C24 CLR . . . U 5 36.939 19.781 49.569 1 31.86 ? C24 CLR 1220 A 1 HETATM 25 C C25 CLR . . . U 5 35.647 19.108 50.024 1 34.78 ? C25 CLR 1220 A 1 HETATM 26 C C26 CLR . . . U 5 35.36 19.439 51.485 1 40.03 ? C26 CLR 1220 A 1 HETATM 27 C C27 CLR . . . U 5 34.455 19.506 49.162 1 42.3 ? C27 CLR 1220 A 1 HETATM 28 O O1 CLR . . . U 5 35.714 18.665 35.673 1 38.92 ? O1 CLR 1220 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #